Wall clock time and date at job start Wed Apr 1 2020 01:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.47032 * 2 1 4 4 C 1.50701 * 109.46909 * 119.99603 * 2 1 3 5 5 H 1.07999 * 120.00028 * 115.02651 * 4 2 1 6 6 C 1.37880 * 120.00114 * 295.03793 * 4 2 1 7 7 N 1.31513 * 120.00132 * 154.97798 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 335.24749 * 6 4 2 9 9 H 1.48494 * 109.47134 * 179.73088 * 8 6 4 10 10 H 1.48501 * 109.46950 * 299.73007 * 8 6 4 11 11 H 1.48499 * 109.47004 * 59.72929 * 8 6 4 12 12 N 1.46496 * 109.47020 * 239.99605 * 2 1 3 13 13 C 1.34773 * 120.00040 * 85.00256 * 12 2 1 14 14 O 1.21361 * 120.00189 * 359.97438 * 13 12 2 15 15 C 1.49356 * 120.00085 * 179.97438 * 13 12 2 16 16 O 1.21366 * 120.00098 * 0.02562 * 15 13 12 17 17 N 1.34780 * 119.99874 * 180.02562 * 15 13 12 18 18 C 1.39746 * 119.99734 * 183.80897 * 17 15 13 19 19 C 1.39042 * 120.00612 * 142.37492 * 18 17 15 20 20 C 1.38185 * 120.20671 * 179.97438 * 19 18 17 21 21 C 1.38054 * 120.21914 * 359.97438 * 20 19 18 22 22 C 1.39539 * 120.01289 * 0.02562 * 21 20 19 23 23 C 1.47949 * 120.10407 * 180.02562 * 22 21 20 24 24 N 1.31438 * 126.50817 * 160.77627 * 23 22 21 25 25 N 1.28549 * 109.71812 * 180.02562 * 24 23 22 26 26 C 1.30617 * 110.05792 * 359.97438 * 25 24 23 27 27 N 1.36082 * 107.43839 * 359.73820 * 26 25 24 28 28 C 1.46501 * 127.09878 * 180.26604 * 27 26 25 29 29 C 1.38665 * 120.00842 * 322.10166 * 18 17 15 30 30 H 1.08998 * 109.47308 * 173.70604 * 1 2 3 31 31 H 1.08991 * 109.47378 * 293.71347 * 1 2 3 32 32 H 1.09007 * 109.46698 * 53.70929 * 1 2 3 33 33 H 0.96995 * 120.00074 * 355.23397 * 7 6 4 34 34 H 0.97003 * 120.00318 * 264.99970 * 12 2 1 35 35 H 0.96995 * 120.00502 * 3.80172 * 17 15 13 36 36 H 1.08003 * 119.89990 * 0.02562 * 19 18 17 37 37 H 1.08002 * 119.89008 * 180.02562 * 20 19 18 38 38 H 1.08000 * 119.99031 * 180.02562 * 21 20 19 39 39 H 1.07994 * 126.28058 * 180.02562 * 26 25 24 40 40 H 1.09008 * 109.46913 * 267.09867 * 28 27 26 41 41 H 1.09000 * 109.47574 * 27.09596 * 28 27 26 42 42 H 1.09004 * 109.47116 * 147.10022 * 28 27 26 43 43 H 1.07997 * 120.10724 * 359.97438 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.5854 -1.6329 1.1336 6 6 1.7857 -0.1826 2.4802 7 7 1.7603 -0.9699 3.5333 8 14 1.4800 1.6498 2.6765 9 1 1.2356 1.9604 4.1078 10 1 2.6685 2.4035 2.2024 11 1 0.2930 2.0423 1.8751 12 7 2.0184 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.8581 1.1590 -2.4118 15 6 2.6455 -0.7224 -3.5764 16 8 2.9341 -1.9000 -3.5219 17 7 2.7747 -0.0500 -4.7373 18 6 3.1646 -0.7259 -5.8966 19 6 2.6057 -0.3830 -7.1227 20 6 2.9887 -1.0483 -8.2717 21 6 3.9289 -2.0572 -8.2098 22 6 4.4958 -2.4088 -6.9842 23 6 5.5040 -3.4894 -6.9156 24 7 6.3644 -3.6955 -5.9436 25 7 7.0884 -4.7224 -6.2157 26 6 6.7347 -5.2274 -7.3672 27 7 5.7137 -4.4678 -7.8493 28 6 4.9909 -4.6562 -9.1096 29 6 4.1132 -1.7349 -5.8252 30 1 -0.3634 -1.0214 -0.1127 31 1 -0.3633 0.4132 0.9408 32 1 -0.3633 0.6083 -0.8284 33 1 1.8462 -1.9298 3.4233 34 1 2.2491 -1.6319 -1.1525 35 1 2.5970 0.9031 -4.7681 36 1 1.8706 0.4063 -7.1774 37 1 2.5515 -0.7775 -9.2214 38 1 4.2258 -2.5745 -9.1102 39 1 7.1694 -6.0920 -7.8463 40 1 5.4587 -4.0557 -9.8900 41 1 5.0223 -5.7083 -9.3928 42 1 3.9539 -4.3446 -8.9838 43 1 4.5521 -1.9995 -4.8747 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000438879953.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:11 Heat of formation + Delta-G solvation = 22.538861 kcal Electronic energy + Delta-G solvation = -28582.765364 eV Core-core repulsion = 24435.978556 eV Total energy + Delta-G solvation = -4146.786808 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.00453 -42.17739 -40.53694 -39.33148 -37.20351 -36.42322 -35.77505 -34.52188 -33.36794 -31.74589 -31.08064 -30.26395 -28.60206 -27.04588 -26.40566 -24.89648 -23.89962 -23.07145 -22.17702 -21.90525 -21.34506 -20.36335 -19.32541 -18.71484 -17.95910 -17.61708 -17.41327 -17.25938 -16.99409 -16.74043 -16.29282 -15.79049 -15.68143 -15.36623 -15.13689 -14.92091 -14.68972 -14.57822 -14.35456 -14.28224 -14.02374 -13.79321 -13.55750 -13.33339 -13.08511 -12.69969 -12.57265 -12.44999 -12.42571 -12.05858 -11.78203 -11.74401 -11.39443 -11.29462 -11.17872 -10.89808 -10.76905 -10.47012 -10.19410 -9.65826 -9.33423 -8.87428 -6.47441 -0.33707 -0.03304 0.47386 1.00990 1.20532 1.46976 1.47644 1.52307 1.72869 1.80710 2.03584 2.43241 2.59122 2.71514 2.91264 3.07888 3.33831 3.61393 3.81328 3.86964 4.00502 4.08589 4.16942 4.34984 4.37149 4.41044 4.47010 4.64917 4.65831 4.67977 4.72045 4.82766 4.97600 4.99734 5.13486 5.15900 5.25672 5.32342 5.35967 5.40807 5.53422 5.79131 5.87195 5.90988 5.96476 6.39778 6.45225 6.65159 6.89563 7.26082 7.62083 8.50547 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.016834 B = 0.002355 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.919454 B =11887.510050 C =13131.749530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.245 3.755 3 H 0.039 0.961 4 C -0.635 4.635 5 H 0.035 0.965 6 C 0.004 3.996 7 N -0.913 5.913 8 Si 1.070 2.930 9 H -0.280 1.280 10 H -0.270 1.270 11 H -0.245 1.245 12 N -0.671 5.671 13 C 0.501 3.499 14 O -0.546 6.546 15 C 0.513 3.487 16 O -0.523 6.523 17 N -0.633 5.633 18 C 0.123 3.877 19 C -0.111 4.111 20 C -0.083 4.083 21 C -0.109 4.109 22 C -0.021 4.021 23 C 0.210 3.790 24 N -0.338 5.338 25 N -0.354 5.354 26 C 0.173 3.827 27 N -0.471 5.471 28 C 0.051 3.949 29 C -0.104 4.104 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.260 0.740 34 H 0.407 0.593 35 H 0.435 0.565 36 H 0.164 0.836 37 H 0.184 0.816 38 H 0.167 0.833 39 H 0.272 0.728 40 H 0.112 0.888 41 H 0.126 0.874 42 H 0.103 0.897 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.275 -3.033 -36.816 36.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.141 3.859 3 H 0.057 0.943 4 C -0.672 4.672 5 H 0.053 0.947 6 C -0.198 4.198 7 N -0.546 5.546 8 Si 0.890 3.110 9 H -0.206 1.206 10 H -0.196 1.196 11 H -0.169 1.169 12 N -0.320 5.320 13 C 0.281 3.719 14 O -0.425 6.425 15 C 0.295 3.705 16 O -0.398 6.398 17 N -0.281 5.281 18 C 0.030 3.970 19 C -0.132 4.132 20 C -0.101 4.101 21 C -0.129 4.129 22 C -0.025 4.025 23 C -0.056 4.056 24 N -0.178 5.178 25 N -0.192 5.192 26 C -0.114 4.114 27 N -0.162 5.162 28 C -0.088 4.088 29 C -0.126 4.126 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.243 0.757 35 H 0.275 0.725 36 H 0.182 0.818 37 H 0.201 0.799 38 H 0.184 0.816 39 H 0.287 0.713 40 H 0.130 0.870 41 H 0.144 0.856 42 H 0.121 0.879 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.748 -1.750 -34.314 34.403 hybrid contribution 0.213 -2.077 -1.089 2.355 sum 1.961 -3.828 -35.403 35.663 Atomic orbital electron populations 1.22312 0.96608 1.00941 1.00964 1.18984 0.92092 0.93394 0.81397 0.94339 1.22115 1.41510 1.11079 0.92497 0.94718 1.26939 0.92105 1.09344 0.91450 1.70964 1.44599 1.05774 1.33244 0.83732 0.79176 0.71049 0.77019 1.20559 1.19571 1.16856 1.46130 1.62087 1.14824 1.08935 1.20010 0.80108 0.87029 0.84766 1.90696 1.51173 1.15529 1.85104 1.20316 0.78494 0.86650 0.85010 1.90798 1.47782 1.16564 1.84699 1.42997 1.65385 1.13737 1.05976 1.17803 0.96180 0.96214 0.86775 1.21549 0.99622 1.01985 0.90026 1.21384 0.95739 0.93670 0.99301 1.21777 0.96899 0.98444 0.95785 1.17407 0.95809 0.94315 0.94923 1.23110 0.99731 0.94252 0.88528 1.74513 1.06960 1.12867 1.23450 1.74112 1.23255 1.06702 1.15173 1.27539 0.90186 1.00303 0.93402 1.46804 1.28192 1.21546 1.19647 1.22863 0.97965 1.07316 0.80701 1.21077 0.96093 0.96940 0.98489 0.93258 0.92196 0.93152 0.93100 0.75734 0.72471 0.81820 0.79913 0.81620 0.71281 0.86968 0.85606 0.87890 0.87540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.52 9.22 71.98 0.66 -5.86 16 2 C 0.24 11.81 2.16 44.25 0.10 11.90 16 3 H 0.04 1.93 6.17 -2.39 -0.01 1.91 16 4 C -0.63 -35.63 8.94 25.60 0.23 -35.40 16 5 H 0.03 2.12 7.96 -2.91 -0.02 2.09 16 6 C 0.00 0.24 5.17 84.66 0.44 0.68 16 7 N -0.91 -55.63 13.70 21.45 0.29 -55.34 16 8 Si 1.07 49.24 26.49 68.60 1.82 51.06 16 9 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.24 -10.08 6.20 99.48 0.62 -9.46 16 12 N -0.67 -29.13 5.06 -447.53 -2.27 -31.39 16 13 C 0.50 19.51 7.85 87.24 0.68 20.19 16 14 O -0.55 -22.02 16.14 -3.28 -0.05 -22.08 16 15 C 0.51 17.59 7.71 87.24 0.67 18.26 16 16 O -0.52 -20.67 14.11 -3.30 -0.05 -20.72 16 17 N -0.63 -16.30 5.31 -304.94 -1.62 -17.92 16 18 C 0.12 2.85 6.23 38.17 0.24 3.09 16 19 C -0.11 -1.47 9.96 22.45 0.22 -1.25 16 20 C -0.08 -0.67 10.02 22.21 0.22 -0.45 16 21 C -0.11 -1.22 8.67 22.54 0.20 -1.03 16 22 C -0.02 -0.47 5.86 -20.11 -0.12 -0.59 16 23 C 0.21 5.31 7.68 136.43 1.05 6.36 16 24 N -0.34 -11.62 12.04 -51.06 -0.61 -12.24 16 25 N -0.35 -10.63 12.19 -59.58 -0.73 -11.36 16 26 C 0.17 2.93 12.77 179.89 2.30 5.22 16 27 N -0.47 -7.04 3.20 -542.80 -1.74 -8.78 16 28 C 0.05 0.08 9.46 127.77 1.21 1.29 16 29 C -0.10 -2.96 8.32 22.66 0.19 -2.77 16 30 H 0.05 2.08 8.14 -2.39 -0.02 2.07 16 31 H 0.06 2.63 5.53 -2.39 -0.01 2.62 16 32 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.26 16.01 8.73 -92.71 -0.81 15.20 16 34 H 0.41 17.61 8.00 -92.71 -0.74 16.87 16 35 H 0.43 9.09 8.30 -92.71 -0.77 8.32 16 36 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 37 H 0.18 -0.13 8.06 -2.91 -0.02 -0.16 16 38 H 0.17 0.53 5.05 -2.91 -0.01 0.51 16 39 H 0.27 1.18 8.06 -2.91 -0.02 1.16 16 40 H 0.11 -0.36 7.87 -2.38 -0.02 -0.38 16 41 H 0.13 -0.50 8.14 -2.39 -0.02 -0.52 16 42 H 0.10 0.08 6.36 -2.38 -0.02 0.07 16 43 H 0.11 3.99 6.38 -2.91 -0.02 3.97 16 Total: -1.00 -87.85 367.64 2.80 -85.05 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: -0.54 Total: 24.06 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: 8.29 Total: 19.65 kcal Atomic # 7 Polarization: -130.35 SS G_CDS: -6.67 Total: -137.02 kcal Atomic # 8 Polarization: -42.70 SS G_CDS: -0.10 Total: -42.80 kcal Atomic # 14 Polarization: 49.24 SS G_CDS: 1.82 Total: 51.06 kcal Total: -87.85 2.80 -85.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438879953.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.590 kcal (2) G-P(sol) polarization free energy of solvation -87.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds