Wall clock time and date at job start Wed Apr 1 2020 01:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47425 * 2 1 4 4 C 1.50705 * 109.47032 * 240.00330 * 2 1 3 5 5 H 1.08001 * 120.00257 * 240.00164 * 4 2 1 6 6 C 1.37883 * 119.99828 * 59.99935 * 4 2 1 7 7 N 1.31513 * 120.00118 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 119.99977 * 359.97438 * 6 4 2 9 9 H 1.48499 * 109.47232 * 270.00162 * 8 6 4 10 10 H 1.48501 * 109.46992 * 30.00139 * 8 6 4 11 11 H 1.48502 * 109.46991 * 149.99834 * 8 6 4 12 12 N 1.46497 * 109.47282 * 120.00636 * 2 1 3 13 13 C 1.34779 * 120.00058 * 274.99566 * 12 2 1 14 14 O 1.21359 * 119.99439 * 0.02562 * 13 12 2 15 15 C 1.49350 * 120.00155 * 179.97438 * 13 12 2 16 16 O 1.21371 * 120.00180 * 0.02562 * 15 13 12 17 17 N 1.34773 * 119.99816 * 180.02562 * 15 13 12 18 18 C 1.39749 * 119.99784 * 174.79243 * 17 15 13 19 19 C 1.39045 * 120.00673 * 153.30269 * 18 17 15 20 20 C 1.38186 * 120.20730 * 179.97438 * 19 18 17 21 21 C 1.38045 * 120.21929 * 359.97438 * 20 19 18 22 22 C 1.39544 * 120.01323 * 359.97438 * 21 20 19 23 23 C 1.47949 * 120.09984 * 180.02562 * 22 21 20 24 24 N 1.31447 * 126.50600 * 162.02915 * 23 22 21 25 25 N 1.28539 * 109.72117 * 179.97438 * 24 23 22 26 26 C 1.30616 * 110.05515 * 0.02562 * 25 24 23 27 27 N 1.36075 * 107.44205 * 359.73202 * 26 25 24 28 28 C 1.46496 * 127.10122 * 180.26359 * 27 26 25 29 29 C 1.38664 * 120.01017 * 333.02484 * 18 17 15 30 30 H 1.08997 * 109.46757 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46632 * 299.99762 * 1 2 3 32 32 H 1.08999 * 109.47084 * 59.99779 * 1 2 3 33 33 H 0.96999 * 120.00003 * 180.02562 * 7 6 4 34 34 H 0.97000 * 119.99969 * 94.99835 * 12 2 1 35 35 H 0.97000 * 120.00221 * 354.79756 * 17 15 13 36 36 H 1.08003 * 119.89762 * 359.97438 * 19 18 17 37 37 H 1.08003 * 119.88875 * 180.02562 * 20 19 18 38 38 H 1.08001 * 119.99750 * 180.02562 * 21 20 19 39 39 H 1.08000 * 126.27559 * 179.97438 * 26 25 24 40 40 H 1.09004 * 109.47169 * 263.91692 * 28 27 26 41 41 H 1.09001 * 109.47355 * 23.92075 * 28 27 26 42 42 H 1.09007 * 109.47390 * 143.92002 * 28 27 26 43 43 H 1.08004 * 120.10567 * 0.02562 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2306 5 1 2.6533 -1.5885 -1.1316 6 6 1.6992 -0.2392 -2.4828 7 7 2.1371 -0.8593 -3.5567 8 14 0.6247 1.2792 -2.6540 9 1 -0.8029 0.8728 -2.6997 10 1 0.8470 2.1765 -1.4919 11 1 0.9758 1.9954 -3.9067 12 7 2.0184 -0.6907 1.1961 13 6 2.1472 -0.0185 2.3571 14 8 1.8582 1.1589 2.4117 15 6 2.6446 -0.7228 3.5766 16 8 2.9332 -1.9004 3.5220 17 7 2.7729 -0.0506 4.7377 18 6 3.1334 -0.7320 5.9033 19 6 3.7931 -0.0595 6.9261 20 6 4.1510 -0.7291 8.0807 21 6 3.8556 -2.0697 8.2264 22 6 3.1929 -2.7533 7.2062 23 6 2.8748 -4.1899 7.3606 24 7 1.9935 -4.8747 6.6662 25 7 1.9798 -6.0960 7.0669 26 6 2.8439 -6.2603 8.0325 27 7 3.4462 -5.0595 8.2496 28 6 4.4888 -4.7590 9.2338 29 6 2.8283 -2.0774 6.0427 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.9031 -0.5276 -4.4376 34 1 2.2491 -1.6319 1.1524 35 1 2.6149 0.9061 4.7643 36 1 4.0264 0.9894 6.8178 37 1 4.6629 -0.2016 8.8720 38 1 4.1366 -2.5894 9.1305 39 1 3.0462 -7.1812 8.5591 40 1 4.0316 -4.3453 10.1327 41 1 5.0244 -5.6740 9.4867 42 1 5.1863 -4.0339 8.8143 43 1 2.3123 -2.6007 5.2512 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438879957.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:15 Heat of formation + Delta-G solvation = 59.505720 kcal Electronic energy + Delta-G solvation = -28628.046830 eV Core-core repulsion = 24482.863025 eV Total energy + Delta-G solvation = -4145.183805 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.21189 -40.99944 -39.34678 -38.08754 -35.79392 -35.37314 -34.74626 -32.61848 -32.40894 -30.36138 -29.98044 -29.43524 -28.17376 -25.45130 -25.04210 -24.11189 -23.05020 -22.12455 -21.24694 -20.75782 -19.79332 -18.81691 -17.97929 -16.98729 -16.93881 -16.64277 -16.56033 -15.92626 -15.76460 -15.58960 -15.33214 -14.82178 -14.58318 -14.27582 -14.06511 -13.93645 -13.66113 -13.53559 -13.29070 -13.13790 -12.90538 -12.26416 -12.14945 -11.93754 -11.91510 -11.75350 -11.41031 -11.24550 -10.96298 -10.83862 -10.57430 -10.54307 -10.24021 -10.10140 -9.73498 -9.31539 -9.23156 -8.82875 -8.76399 -8.42786 -8.36614 -6.23409 -4.27491 0.43667 0.92188 1.62616 1.81109 2.03435 2.47126 2.67914 3.21303 3.33047 3.35380 3.37723 3.60479 3.76159 3.91219 4.06631 4.24736 4.27948 4.46289 4.47622 4.61954 4.79440 4.80671 4.84009 4.88068 5.09813 5.10085 5.26246 5.34604 5.54600 5.76363 5.88691 5.97216 6.05053 6.16034 6.22587 6.27220 6.45399 6.46362 6.62660 6.71507 6.87272 7.06303 7.11672 7.38390 7.65393 8.00201 8.37645 8.45765 8.48409 8.76927 9.34735 10.88562 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.017300 B = 0.002348 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.138851 B =11924.254697 C =13047.527402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.235 3.765 3 H 0.054 0.946 4 C -0.539 4.539 5 H 0.084 0.916 6 C 0.080 3.920 7 N -0.888 5.888 8 Si 0.885 3.115 9 H -0.275 1.275 10 H -0.262 1.262 11 H -0.293 1.293 12 N -0.659 5.659 13 C 0.498 3.502 14 O -0.536 6.536 15 C 0.507 3.493 16 O -0.491 6.491 17 N -0.649 5.649 18 C 0.158 3.842 19 C -0.133 4.133 20 C -0.094 4.094 21 C -0.137 4.137 22 C 0.001 3.999 23 C 0.221 3.779 24 N -0.270 5.270 25 N -0.292 5.292 26 C 0.153 3.847 27 N -0.480 5.480 28 C 0.066 3.934 29 C -0.086 4.086 30 H 0.057 0.943 31 H 0.038 0.962 32 H 0.051 0.949 33 H 0.269 0.731 34 H 0.410 0.590 35 H 0.425 0.575 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.127 0.873 39 H 0.222 0.778 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.481 -2.944 30.667 31.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.132 3.868 3 H 0.072 0.928 4 C -0.577 4.577 5 H 0.102 0.898 6 C -0.124 4.124 7 N -0.525 5.525 8 Si 0.715 3.285 9 H -0.201 1.201 10 H -0.186 1.186 11 H -0.220 1.220 12 N -0.308 5.308 13 C 0.277 3.723 14 O -0.415 6.415 15 C 0.290 3.710 16 O -0.363 6.363 17 N -0.296 5.296 18 C 0.063 3.937 19 C -0.154 4.154 20 C -0.112 4.112 21 C -0.157 4.157 22 C -0.002 4.002 23 C -0.043 4.043 24 N -0.111 5.111 25 N -0.131 5.131 26 C -0.134 4.134 27 N -0.171 5.171 28 C -0.076 4.076 29 C -0.108 4.108 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.246 0.754 35 H 0.264 0.736 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.145 0.855 39 H 0.238 0.762 40 H 0.104 0.896 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.378 -3.350 29.309 29.986 hybrid contribution 0.543 0.886 0.817 1.322 sum 5.920 -2.464 30.126 30.801 Atomic orbital electron populations 1.22475 0.98630 1.01427 0.99636 1.19326 0.90609 0.94755 0.82083 0.92791 1.21000 1.33715 1.14739 0.88264 0.89834 1.24821 0.95435 0.96737 0.95419 1.69862 1.44582 1.39932 0.98083 0.86881 0.80631 0.83465 0.77549 1.20143 1.18635 1.22027 1.46148 1.61208 1.14881 1.08567 1.19636 0.80976 0.87194 0.84498 1.90728 1.50912 1.15171 1.84682 1.20874 0.78136 0.87268 0.84719 1.90776 1.45503 1.15427 1.84630 1.43231 1.66991 1.13317 1.06036 1.17652 0.97114 0.92189 0.86789 1.21053 0.99463 1.00950 0.93971 1.20770 0.99547 0.93655 0.97250 1.21307 1.00843 0.95178 0.98385 1.17230 1.00983 0.86742 0.95257 1.22915 0.96261 0.93126 0.92006 1.74656 1.16878 0.98485 1.21075 1.74266 1.18363 1.10264 1.10224 1.26636 0.95698 0.90756 1.00275 1.46521 1.31595 1.09395 1.29608 1.22345 0.89773 1.04381 0.91130 1.21411 0.98746 0.93214 0.97463 0.92343 0.94322 0.93017 0.92143 0.75442 0.73622 0.84794 0.84803 0.85480 0.76183 0.89644 0.88594 0.88530 0.82294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.60 8.96 37.16 0.33 -3.27 16 2 C 0.23 5.54 2.15 -69.08 -0.15 5.39 16 3 H 0.05 1.36 6.64 -51.93 -0.34 1.01 16 4 C -0.54 -14.60 9.31 -34.44 -0.32 -14.92 16 5 H 0.08 2.41 7.98 -52.49 -0.42 1.99 16 6 C 0.08 2.24 5.45 -17.82 -0.10 2.14 16 7 N -0.89 -26.28 13.96 55.43 0.77 -25.50 16 8 Si 0.89 21.35 24.37 -169.99 -4.14 17.20 16 9 H -0.27 -6.42 6.87 56.52 0.39 -6.03 16 10 H -0.26 -6.16 6.53 56.52 0.37 -5.79 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 N -0.66 -13.55 5.06 -55.39 -0.28 -13.83 16 13 C 0.50 9.36 7.85 -11.63 -0.09 9.26 16 14 O -0.54 -10.82 16.15 5.49 0.09 -10.73 16 15 C 0.51 8.21 7.67 -11.63 -0.09 8.12 16 16 O -0.49 -8.85 13.74 5.48 0.08 -8.77 16 17 N -0.65 -8.23 5.34 -10.33 -0.06 -8.29 16 18 C 0.16 1.85 6.39 -83.79 -0.54 1.32 16 19 C -0.13 -1.11 9.94 -39.30 -0.39 -1.50 16 20 C -0.09 -0.63 10.02 -39.67 -0.40 -1.03 16 21 C -0.14 -1.04 8.73 -39.17 -0.34 -1.38 16 22 C 0.00 0.01 5.86 -105.00 -0.62 -0.60 16 23 C 0.22 2.74 7.69 -154.24 -1.19 1.56 16 24 N -0.27 -4.28 12.03 32.51 0.39 -3.89 16 25 N -0.29 -4.14 12.19 29.82 0.36 -3.78 16 26 C 0.15 1.37 12.77 -89.33 -1.14 0.23 16 27 N -0.48 -4.03 3.20 -122.92 -0.39 -4.43 16 28 C 0.07 0.20 9.41 59.84 0.56 0.76 16 29 C -0.09 -1.17 8.35 -38.99 -0.33 -1.49 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 1.17 3.27 -51.93 -0.17 1.00 16 33 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.41 8.09 8.01 -40.82 -0.33 7.76 16 35 H 0.43 4.53 8.27 -40.82 -0.34 4.19 16 36 H 0.13 0.81 8.06 -52.48 -0.42 0.38 16 37 H 0.13 0.49 8.06 -52.48 -0.42 0.06 16 38 H 0.13 0.57 4.91 -52.49 -0.26 0.31 16 39 H 0.22 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.09 0.11 7.75 -51.93 -0.40 -0.29 16 41 H 0.10 0.05 8.14 -51.93 -0.42 -0.37 16 42 H 0.10 0.26 6.53 -51.92 -0.34 -0.08 16 43 H 0.16 2.62 5.83 -52.48 -0.31 2.31 16 LS Contribution 363.21 15.07 5.47 5.47 Total: -1.00 -36.36 363.21 -7.11 -43.47 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -4.62 Total: 8.48 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: -4.78 Total: 4.59 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: 0.80 Total: -59.71 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: 0.16 Total: -19.51 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.14 Total: 17.20 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.36 -7.11 -43.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438879957.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.977 kcal (2) G-P(sol) polarization free energy of solvation -36.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds