Wall clock time and date at job start Wed Apr 1 2020 01:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08989 * 109.47490 * 2 1 4 4 C 1.50699 * 109.47106 * 120.00360 * 2 1 3 5 5 H 1.07995 * 120.00331 * 119.00831 * 4 2 1 6 6 C 1.37883 * 119.99822 * 299.00444 * 4 2 1 7 7 N 1.31518 * 119.99721 * 153.83787 * 6 4 2 8 8 Si 1.86794 * 120.00089 * 334.11853 * 6 4 2 9 9 H 1.48499 * 109.47166 * 179.72309 * 8 6 4 10 10 H 1.48502 * 109.47235 * 299.72092 * 8 6 4 11 11 H 1.48502 * 109.47090 * 59.72055 * 8 6 4 12 12 N 1.46504 * 109.47085 * 239.99845 * 2 1 3 13 13 C 1.46503 * 120.00085 * 300.00318 * 12 2 1 14 14 C 1.34775 * 120.00058 * 119.99647 * 12 2 1 15 15 O 1.21360 * 119.99777 * 5.33374 * 14 12 2 16 16 C 1.49328 * 120.00080 * 185.32995 * 14 12 2 17 17 O 1.21393 * 120.00422 * 4.82636 * 16 14 12 18 18 N 1.34777 * 120.00397 * 184.82505 * 16 14 12 19 19 C 1.39757 * 120.00664 * 184.43138 * 18 16 14 20 20 C 1.39118 * 120.51725 * 333.96662 * 19 18 16 21 21 C 1.38631 * 118.41657 * 179.76144 * 20 19 18 22 22 C 1.38203 * 119.36878 * 0.55436 * 21 20 19 23 23 N 1.31899 * 121.00084 * 359.67985 * 22 21 20 24 24 C 1.32241 * 121.72662 * 0.02562 * 23 22 21 25 25 N 1.39839 * 119.73974 * 179.97438 * 24 23 22 26 26 C 1.35823 * 126.10016 * 334.74823 * 25 24 23 27 27 C 1.35307 * 107.61283 * 179.83255 * 26 25 24 28 28 C 1.39938 * 107.96853 * 0.42336 * 27 26 25 29 29 N 1.30840 * 108.36277 * 359.73484 * 28 27 26 30 30 H 1.09007 * 109.47433 * 174.11752 * 1 2 3 31 31 H 1.09008 * 109.47229 * 294.11441 * 1 2 3 32 32 H 1.09000 * 109.47590 * 54.11352 * 1 2 3 33 33 H 0.97004 * 120.00263 * 355.26438 * 7 6 4 34 34 H 1.09001 * 109.46993 * 95.26812 * 13 12 2 35 35 H 1.08996 * 109.46991 * 215.27228 * 13 12 2 36 36 H 1.08998 * 109.46880 * 335.27144 * 13 12 2 37 37 H 0.97008 * 119.99196 * 4.42681 * 18 16 14 38 38 H 1.08005 * 120.78820 * 0.02562 * 20 19 18 39 39 H 1.08009 * 120.31598 * 180.25792 * 21 20 19 40 40 H 1.08003 * 119.50196 * 179.70600 * 22 21 20 41 41 H 1.08000 * 126.19646 * 359.95309 * 26 25 24 42 42 H 1.07998 * 126.01586 * 180.19379 * 27 26 25 43 43 H 1.08000 * 125.81469 * 179.71919 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6399 -1.5978 1.1314 6 6 1.7162 -0.2276 2.4826 7 7 1.6801 -1.0446 3.5126 8 14 1.3315 1.5855 2.7148 9 1 1.0189 1.8463 4.1429 10 1 2.5074 2.3969 2.3094 11 1 0.1626 1.9548 1.8766 12 7 2.0183 -0.6907 -1.1962 13 6 1.6643 -2.0932 -1.4280 14 6 2.7931 -0.0357 -2.0834 15 8 3.1662 1.0943 -1.8451 16 6 3.1925 -0.7004 -3.3596 17 8 2.7489 -1.7954 -3.6384 18 7 4.0455 -0.0846 -4.2020 19 6 4.3473 -0.6634 -5.4377 20 6 4.2497 -2.0397 -5.6158 21 6 4.5547 -2.5671 -6.8611 22 6 4.9542 -1.7193 -7.8768 23 7 5.0432 -0.4181 -7.6801 24 6 4.7568 0.1297 -6.5110 25 7 4.8659 1.5143 -6.3484 26 6 5.6661 2.3438 -7.0669 27 6 5.4751 3.6004 -6.6028 28 6 4.5388 3.5395 -5.5646 29 7 4.1737 2.2924 -5.4114 30 1 -0.3634 -1.0223 -0.1053 31 1 -0.3634 0.4199 0.9380 32 1 -0.3634 0.6024 -0.8326 33 1 1.8081 -1.9971 3.3809 34 1 0.7905 -2.1448 -2.0776 35 1 2.5010 -2.6053 -1.9031 36 1 1.4381 -2.5730 -0.4758 37 1 4.4499 0.7606 -3.9505 38 1 3.9397 -2.6816 -4.8044 39 1 4.4853 -3.6309 -7.0345 40 1 5.1969 -2.1284 -8.8465 41 1 6.3327 2.0534 -7.8654 42 1 5.9624 4.4928 -6.9669 43 1 4.1792 4.3788 -4.9878 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439328694.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:31 Heat of formation + Delta-G solvation = 90.024177 kcal Electronic energy + Delta-G solvation = -29842.574308 eV Core-core repulsion = 25698.713883 eV Total energy + Delta-G solvation = -4143.860425 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.98319 -40.91089 -39.91567 -38.28911 -36.14936 -35.12782 -33.90002 -32.81681 -31.65111 -30.49577 -30.27363 -29.37467 -26.46515 -25.42024 -24.75094 -24.49537 -23.23652 -21.50221 -21.15717 -20.77111 -19.31076 -18.62213 -17.96670 -17.56618 -17.29069 -16.39556 -16.28511 -15.90893 -15.62560 -15.45247 -14.97905 -14.77882 -14.22634 -13.96027 -13.94004 -13.68284 -13.47976 -13.31348 -13.00258 -12.82418 -12.73360 -12.57832 -11.98144 -11.89982 -11.71048 -11.42452 -11.30191 -11.02410 -10.87256 -10.66457 -10.52569 -10.24431 -10.06533 -9.83753 -9.63243 -9.26686 -9.18138 -8.96026 -8.35183 -8.24018 -7.93463 -6.59672 -4.19390 0.32830 0.76618 1.70393 1.73796 1.91487 2.43588 2.57730 3.33092 3.35635 3.45367 3.56662 3.59308 3.78932 3.98884 4.18091 4.42561 4.48845 4.61317 4.67340 4.75489 4.88422 5.03081 5.07540 5.20951 5.41365 5.60269 5.69836 5.80371 5.81366 5.92000 6.07459 6.22524 6.24702 6.33031 6.37067 6.45988 6.50573 6.76005 6.84401 6.90337 7.08084 7.13654 7.23644 7.55982 7.65399 7.76688 8.09328 8.25653 8.42313 8.79337 9.44330 10.75990 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.015142 B = 0.003166 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.728875 B = 8842.379602 C =10313.990868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.236 3.764 3 H 0.056 0.944 4 C -0.626 4.626 5 H 0.064 0.936 6 C 0.048 3.952 7 N -0.886 5.886 8 Si 1.028 2.972 9 H -0.282 1.282 10 H -0.278 1.278 11 H -0.274 1.274 12 N -0.547 5.547 13 C 0.082 3.918 14 C 0.495 3.505 15 O -0.527 6.527 16 C 0.512 3.488 17 O -0.502 6.502 18 N -0.629 5.629 19 C 0.119 3.881 20 C -0.077 4.077 21 C -0.155 4.155 22 C 0.103 3.897 23 N -0.480 5.480 24 C 0.333 3.667 25 N -0.329 5.329 26 C 0.080 3.920 27 C -0.265 4.265 28 C 0.071 3.929 29 N -0.286 5.286 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.027 0.973 33 H 0.271 0.729 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.430 0.570 38 H 0.174 0.826 39 H 0.148 0.852 40 H 0.169 0.831 41 H 0.180 0.820 42 H 0.157 0.843 43 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.065 1.214 -23.166 24.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.135 3.865 3 H 0.074 0.926 4 C -0.663 4.663 5 H 0.082 0.918 6 C -0.160 4.160 7 N -0.517 5.517 8 Si 0.855 3.145 9 H -0.208 1.208 10 H -0.204 1.204 11 H -0.200 1.200 12 N -0.277 5.277 13 C -0.061 4.061 14 C 0.276 3.724 15 O -0.405 6.405 16 C 0.296 3.704 17 O -0.377 6.377 18 N -0.277 5.277 19 C 0.017 3.983 20 C -0.105 4.105 21 C -0.176 4.176 22 C -0.056 4.056 23 N -0.193 5.193 24 C 0.103 3.897 25 N -0.108 5.108 26 C -0.062 4.062 27 C -0.293 4.293 28 C -0.118 4.118 29 N -0.106 5.106 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.046 0.954 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.273 0.727 38 H 0.191 0.809 39 H 0.165 0.835 40 H 0.186 0.814 41 H 0.197 0.803 42 H 0.175 0.825 43 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 6.053 1.838 -21.978 22.871 hybrid contribution 0.793 -0.767 -1.022 1.504 sum 6.846 1.071 -23.000 24.021 Atomic orbital electron populations 1.22478 0.98024 1.00674 1.00445 1.19354 0.90717 0.94645 0.81817 0.92644 1.22015 1.38477 1.15313 0.90502 0.91764 1.25621 0.93109 1.05432 0.91887 1.70872 1.41929 1.05376 1.33562 0.84302 0.77683 0.76113 0.76370 1.20800 1.20432 1.19977 1.47955 1.45920 1.12495 1.21336 1.21971 1.00848 0.81300 1.01947 1.19495 0.82027 0.86733 0.84168 1.90737 1.54565 1.18434 1.76752 1.20949 0.78213 0.85412 0.85822 1.90612 1.53254 1.19186 1.74672 1.43334 1.43611 1.26635 1.14072 1.18332 1.01794 0.92578 0.85553 1.22163 0.96147 0.92486 0.99661 1.22176 1.00021 1.02143 0.93215 1.22493 0.96703 0.86511 0.99883 1.66897 1.17534 1.15204 1.19636 1.17381 1.02185 0.80929 0.89178 1.45807 1.32896 1.03737 1.28316 1.22877 0.95859 0.89985 0.97489 1.21660 1.06828 0.97628 1.03228 1.24240 0.95641 0.94778 0.97092 1.77496 1.18199 1.03751 1.11113 0.93117 0.91458 0.95376 0.91872 0.93088 0.90600 0.90150 0.72730 0.80910 0.83450 0.81426 0.80261 0.82549 0.78807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.44 8.96 37.16 0.33 -3.11 16 2 C 0.24 5.69 2.23 -69.08 -0.15 5.54 16 3 H 0.06 1.43 5.72 -51.93 -0.30 1.14 16 4 C -0.63 -17.02 8.21 -34.44 -0.28 -17.30 16 5 H 0.06 1.87 7.63 -52.49 -0.40 1.47 16 6 C 0.05 1.33 5.14 -17.82 -0.09 1.24 16 7 N -0.89 -26.02 13.70 55.43 0.76 -25.26 16 8 Si 1.03 24.62 26.49 -169.99 -4.50 20.11 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.27 -6.04 5.97 56.52 0.34 -5.71 16 12 N -0.55 -11.80 2.75 -175.82 -0.48 -12.29 16 13 C 0.08 1.53 8.07 59.85 0.48 2.01 16 14 C 0.50 10.34 7.72 -11.64 -0.09 10.25 16 15 O -0.53 -12.08 15.84 5.49 0.09 -11.99 16 16 C 0.51 9.04 7.61 -11.64 -0.09 8.95 16 17 O -0.50 -8.55 10.33 5.46 0.06 -8.49 16 18 N -0.63 -10.03 4.74 -10.09 -0.05 -10.07 16 19 C 0.12 1.67 6.46 -83.41 -0.54 1.14 16 20 C -0.08 -0.92 8.89 -39.11 -0.35 -1.26 16 21 C -0.15 -1.33 10.10 -39.45 -0.40 -1.73 16 22 C 0.10 0.88 11.17 -17.54 -0.20 0.69 16 23 N -0.48 -5.50 10.01 -12.11 -0.12 -5.62 16 24 C 0.33 4.46 7.43 -154.16 -1.15 3.31 16 25 N -0.33 -4.36 3.70 -11.95 -0.04 -4.41 16 26 C 0.08 0.83 11.20 -16.83 -0.19 0.64 16 27 C -0.26 -2.45 10.80 -39.99 -0.43 -2.88 16 28 C 0.07 0.78 12.02 -17.34 -0.21 0.57 16 29 N -0.29 -4.09 9.81 30.64 0.30 -3.79 16 30 H 0.05 1.05 7.48 -51.92 -0.39 0.66 16 31 H 0.07 1.50 5.05 -51.92 -0.26 1.24 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.27 7.89 8.73 -40.82 -0.36 7.53 16 34 H 0.05 0.87 8.11 -51.93 -0.42 0.45 16 35 H 0.08 1.32 5.91 -51.93 -0.31 1.01 16 36 H 0.08 1.57 7.09 -51.93 -0.37 1.20 16 37 H 0.43 7.08 6.12 -40.82 -0.25 6.83 16 38 H 0.17 2.18 5.65 -52.48 -0.30 1.88 16 39 H 0.15 0.80 8.06 -52.48 -0.42 0.37 16 40 H 0.17 0.81 8.06 -52.48 -0.42 0.39 16 41 H 0.18 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.20 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 359.49 15.07 5.42 5.42 Total: -1.00 -32.93 359.49 -6.67 -39.60 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -4.74 Total: 8.73 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: -3.35 Total: 8.05 kcal Atomic # 7 Polarization: -61.80 SS G_CDS: 0.36 Total: -61.43 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: 0.14 Total: -20.48 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -4.50 Total: 20.11 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.93 -6.67 -39.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439328694.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.625 kcal (2) G-P(sol) polarization free energy of solvation -32.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds