Wall clock time and date at job start Wed Apr 1 2020 01:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47070 * 2 1 4 4 C 1.50704 * 109.46897 * 240.00574 * 2 1 3 5 5 H 1.07999 * 119.99946 * 245.84698 * 4 2 1 6 6 C 1.37878 * 120.00265 * 65.85125 * 4 2 1 7 7 N 1.31509 * 120.00336 * 201.59591 * 6 4 2 8 8 Si 1.86808 * 119.99780 * 21.87313 * 6 4 2 9 9 H 1.48499 * 109.46929 * 179.72656 * 8 6 4 10 10 H 1.48497 * 109.46988 * 299.72146 * 8 6 4 11 11 H 1.48494 * 109.46966 * 59.72377 * 8 6 4 12 12 N 1.46496 * 109.47222 * 120.00733 * 2 1 3 13 13 C 1.46498 * 120.00428 * 59.99757 * 12 2 1 14 14 C 1.34781 * 119.99577 * 239.99838 * 12 2 1 15 15 O 1.21366 * 120.00133 * 5.45663 * 14 12 2 16 16 C 1.49339 * 119.99828 * 185.45044 * 14 12 2 17 17 O 1.21380 * 119.99852 * 5.58930 * 16 14 12 18 18 N 1.34783 * 119.99801 * 185.58718 * 16 14 12 19 19 C 1.39812 * 119.99663 * 185.04837 * 18 16 14 20 20 C 1.39438 * 120.43109 * 322.04070 * 19 18 16 21 21 C 1.38292 * 118.41842 * 179.73557 * 20 19 18 22 22 C 1.38972 * 119.19063 * 0.53641 * 21 20 19 23 23 N 1.39885 * 119.60965 * 179.69965 * 22 21 20 24 24 C 1.35815 * 126.10577 * 180.02562 * 23 22 21 25 25 C 1.35308 * 107.61663 * 180.02562 * 24 23 22 26 26 C 1.39931 * 107.96686 * 0.02562 * 25 24 23 27 27 N 1.30834 * 108.36723 * 359.71390 * 26 25 24 28 28 N 1.32299 * 120.79156 * 359.72502 * 22 21 20 29 29 C 1.31833 * 121.72230 * 0.02562 * 28 22 21 30 30 H 1.08991 * 109.46925 * 294.49430 * 1 2 3 31 31 H 1.08997 * 109.47017 * 54.49747 * 1 2 3 32 32 H 1.09004 * 109.46956 * 174.49171 * 1 2 3 33 33 H 0.97000 * 119.99479 * 355.24117 * 7 6 4 34 34 H 1.09000 * 109.46873 * 95.75111 * 13 12 2 35 35 H 1.08994 * 109.46918 * 215.75592 * 13 12 2 36 36 H 1.09000 * 109.46668 * 335.75940 * 13 12 2 37 37 H 0.97002 * 119.99948 * 5.04773 * 18 16 14 38 38 H 1.08004 * 120.78885 * 359.97438 * 20 19 18 39 39 H 1.08004 * 120.40488 * 180.26648 * 21 20 19 40 40 H 1.07997 * 126.19462 * 0.02562 * 24 23 22 41 41 H 1.07997 * 126.01479 * 179.97438 * 25 24 23 42 42 H 1.08001 * 125.81629 * 180.02562 * 26 25 24 43 43 H 1.08006 * 119.63560 * 179.97438 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5731 -1.6402 -1.1344 6 6 1.8016 -0.1730 -2.4792 7 7 1.8408 -0.9436 -3.5442 8 14 1.4409 1.6510 -2.6590 9 1 1.2373 1.9763 -4.0936 10 1 0.2132 1.9904 -1.8956 11 1 2.5852 2.4363 -2.1309 12 7 2.0184 -0.6907 1.1960 13 6 1.6645 -2.0933 1.4278 14 6 2.7933 -0.0358 2.0832 15 8 3.0051 1.1511 1.9439 16 6 3.3911 -0.7705 3.2378 17 8 3.2640 -1.9746 3.3223 18 7 4.0718 -0.0964 4.1859 19 6 4.7209 -0.7937 5.2093 20 6 4.1378 -1.9293 5.7702 21 6 4.8188 -2.5901 6.7762 22 6 6.0474 -2.0977 7.1998 23 7 6.7408 -2.7556 8.2211 24 6 7.9439 -2.3913 8.7351 25 6 8.2649 -3.2848 9.6992 26 6 7.2306 -4.2239 9.7789 27 7 6.3158 -3.9054 8.8995 28 7 6.5690 -1.0138 6.6489 29 6 5.9514 -0.3607 5.6845 30 1 -0.3633 0.4260 0.9351 31 1 -0.3633 0.5968 -0.8366 32 1 -0.3633 -1.0230 -0.0986 33 1 2.0995 -1.8747 -3.4598 34 1 2.4656 -2.7354 1.0617 35 1 1.5238 -2.2608 2.4956 36 1 0.7408 -2.3272 0.8984 37 1 4.1114 0.8724 4.1582 38 1 3.1790 -2.2866 5.4244 39 1 4.3989 -3.4756 7.2303 40 1 8.5372 -1.5421 8.4297 41 1 9.1619 -3.2753 10.3006 42 1 7.1916 -5.0653 10.4550 43 1 6.4079 0.5209 5.2591 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439330547.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:34 Heat of formation + Delta-G solvation = 80.138365 kcal Electronic energy + Delta-G solvation = -28636.027411 eV Core-core repulsion = 24491.738305 eV Total energy + Delta-G solvation = -4144.289106 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.91283 -41.15208 -39.98574 -38.35983 -36.27214 -35.31238 -33.21458 -32.82935 -32.68982 -30.57050 -30.34431 -29.19044 -26.54942 -25.46335 -24.80140 -24.45963 -23.45818 -21.64285 -21.21174 -20.74388 -19.43557 -18.74856 -17.98365 -17.68152 -17.29103 -16.63858 -16.23070 -15.96516 -15.80093 -15.46213 -15.19044 -14.60277 -14.28748 -14.12071 -13.96354 -13.79493 -13.55871 -13.32409 -13.14628 -13.06862 -12.89614 -12.68260 -12.16462 -11.83630 -11.76879 -11.48420 -11.36868 -11.22462 -11.02016 -10.60418 -10.46214 -10.26520 -10.09263 -9.90535 -9.86759 -9.37595 -9.26899 -9.13780 -8.41969 -8.28087 -7.99426 -6.62211 -4.24522 0.23092 0.79283 1.45721 1.75802 1.81791 2.38420 2.41416 3.29842 3.30348 3.40695 3.46707 3.53437 3.71698 3.89820 4.14180 4.36349 4.38681 4.48393 4.55505 4.66278 4.78254 5.05411 5.09712 5.24204 5.30475 5.40220 5.57279 5.65351 5.73526 5.79682 6.01024 6.14381 6.18631 6.21440 6.29186 6.37581 6.44762 6.70377 6.75235 6.78185 6.96338 7.00423 7.14961 7.49240 7.56391 7.68543 8.01332 8.22099 8.31576 8.75962 9.43216 10.76371 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.029365 B = 0.002038 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.297905 B =13736.656403 C =14013.007774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.233 3.767 3 H 0.057 0.943 4 C -0.620 4.620 5 H 0.063 0.937 6 C 0.040 3.960 7 N -0.891 5.891 8 Si 1.039 2.961 9 H -0.282 1.282 10 H -0.274 1.274 11 H -0.278 1.278 12 N -0.545 5.545 13 C 0.087 3.913 14 C 0.496 3.504 15 O -0.536 6.536 16 C 0.511 3.489 17 O -0.496 6.496 18 N -0.647 5.647 19 C 0.090 3.910 20 C -0.052 4.052 21 C -0.141 4.141 22 C 0.348 3.652 23 N -0.322 5.322 24 C 0.079 3.921 25 C -0.269 4.269 26 C 0.062 3.938 27 N -0.285 5.285 28 N -0.487 5.487 29 C 0.118 3.882 30 H 0.029 0.971 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.270 0.730 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.426 0.574 38 H 0.159 0.841 39 H 0.152 0.848 40 H 0.182 0.818 41 H 0.156 0.844 42 H 0.193 0.807 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.681 -1.743 24.882 26.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.133 3.867 3 H 0.075 0.925 4 C -0.658 4.658 5 H 0.081 0.919 6 C -0.167 4.167 7 N -0.524 5.524 8 Si 0.866 3.134 9 H -0.208 1.208 10 H -0.200 1.200 11 H -0.204 1.204 12 N -0.275 5.275 13 C -0.056 4.056 14 C 0.276 3.724 15 O -0.415 6.415 16 C 0.294 3.706 17 O -0.369 6.369 18 N -0.295 5.295 19 C -0.008 4.008 20 C -0.080 4.080 21 C -0.164 4.164 22 C 0.120 3.880 23 N -0.100 5.100 24 C -0.063 4.063 25 C -0.297 4.297 26 C -0.127 4.127 27 N -0.104 5.104 28 N -0.199 5.199 29 C -0.043 4.043 30 H 0.048 0.952 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.265 0.735 38 H 0.176 0.824 39 H 0.170 0.830 40 H 0.200 0.800 41 H 0.173 0.827 42 H 0.210 0.790 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 6.885 -0.805 23.350 24.357 hybrid contribution 0.685 -1.019 1.111 1.656 sum 7.570 -1.825 24.461 25.671 Atomic orbital electron populations 1.22469 0.97952 1.01534 0.99782 1.19424 0.91011 0.94637 0.81675 0.92503 1.22079 1.42399 1.10625 0.90698 0.91879 1.25687 0.93733 1.05489 0.91804 1.70879 1.41154 1.08303 1.32024 0.84109 0.77551 0.75295 0.76433 1.20751 1.20024 1.20409 1.48016 1.45249 1.12807 1.21393 1.21919 1.01309 0.81092 1.01297 1.19531 0.81908 0.87198 0.83723 1.90725 1.61013 1.14406 1.75349 1.20922 0.78804 0.87675 0.83174 1.90732 1.55778 1.14191 1.76201 1.43122 1.50867 1.11612 1.23928 1.18763 0.93727 0.96373 0.91928 1.21670 1.00539 0.93597 0.92192 1.21530 0.94037 1.02344 0.98440 1.17667 0.90047 0.90819 0.89418 1.45761 1.15443 1.21341 1.27464 1.22940 0.87701 1.00485 0.95147 1.21663 1.03665 0.99007 1.05375 1.24155 0.91817 0.99701 0.97001 1.77481 1.23367 0.99135 1.10439 1.66810 1.35050 1.07029 1.11024 1.22387 0.89534 0.99553 0.92861 0.95234 0.91564 0.92840 0.91976 0.92429 0.90809 0.90927 0.73470 0.82379 0.82987 0.80044 0.82661 0.79050 0.80949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.29 8.77 37.16 0.33 -2.97 16 2 C 0.23 5.41 2.22 -69.08 -0.15 5.26 16 3 H 0.06 1.40 5.49 -51.93 -0.29 1.12 16 4 C -0.62 -16.59 8.63 -34.44 -0.30 -16.89 16 5 H 0.06 1.82 7.79 -52.49 -0.41 1.42 16 6 C 0.04 1.11 5.30 -17.82 -0.09 1.02 16 7 N -0.89 -26.14 13.70 55.43 0.76 -25.38 16 8 Si 1.04 24.29 26.54 -169.99 -4.51 19.78 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.27 -5.85 5.77 56.52 0.33 -5.53 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.54 -11.11 2.75 -175.81 -0.48 -11.59 16 13 C 0.09 1.54 8.37 59.85 0.50 2.04 16 14 C 0.50 9.36 7.72 -11.64 -0.09 9.27 16 15 O -0.54 -10.99 15.84 5.48 0.09 -10.90 16 16 C 0.51 7.85 7.55 -11.63 -0.09 7.76 16 17 O -0.50 -8.03 11.03 5.47 0.06 -7.97 16 18 N -0.65 -7.67 5.32 -10.18 -0.05 -7.73 16 19 C 0.09 1.00 6.27 -83.55 -0.52 0.48 16 20 C -0.05 -0.60 8.79 -39.11 -0.34 -0.94 16 21 C -0.14 -1.59 9.69 -39.29 -0.38 -1.97 16 22 C 0.35 4.14 7.55 -154.30 -1.17 2.97 16 23 N -0.32 -3.70 3.81 -12.08 -0.05 -3.75 16 24 C 0.08 0.73 11.10 -16.83 -0.19 0.54 16 25 C -0.27 -2.02 10.80 -39.99 -0.43 -2.46 16 26 C 0.06 0.50 12.02 -17.34 -0.21 0.29 16 27 N -0.29 -3.19 11.83 30.64 0.36 -2.83 16 28 N -0.49 -5.46 9.85 -12.10 -0.12 -5.58 16 29 C 0.12 1.17 11.12 -17.33 -0.19 0.98 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 1.40 5.28 -51.93 -0.27 1.13 16 32 H 0.05 1.07 6.89 -51.93 -0.36 0.71 16 33 H 0.27 7.90 8.73 -40.82 -0.36 7.54 16 34 H 0.06 1.07 8.09 -51.93 -0.42 0.65 16 35 H 0.07 1.15 5.99 -51.93 -0.31 0.84 16 36 H 0.07 1.27 6.55 -51.93 -0.34 0.93 16 37 H 0.43 4.28 8.33 -40.82 -0.34 3.94 16 38 H 0.16 1.83 6.53 -52.48 -0.34 1.49 16 39 H 0.15 1.60 7.68 -52.48 -0.40 1.20 16 40 H 0.18 1.32 8.05 -52.49 -0.42 0.90 16 41 H 0.16 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.19 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.17 1.23 8.06 -52.48 -0.42 0.80 16 LS Contribution 364.24 15.07 5.49 5.49 Total: -1.00 -32.70 364.24 -6.61 -39.31 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -4.82 Total: 5.76 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: -3.33 Total: 5.39 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: 0.42 Total: -56.86 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: 0.15 Total: -18.87 kcal Atomic # 14 Polarization: 24.29 SS G_CDS: -4.51 Total: 19.78 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.70 -6.61 -39.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439330547.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.445 kcal (2) G-P(sol) polarization free energy of solvation -32.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds