Wall clock time and date at job start Wed Apr 1 2020 01:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47070 * 2 1 4 4 C 1.50704 * 109.46897 * 240.00574 * 2 1 3 5 5 H 1.07999 * 119.99946 * 245.84698 * 4 2 1 6 6 C 1.37878 * 120.00265 * 65.85125 * 4 2 1 7 7 N 1.31509 * 120.00336 * 201.59591 * 6 4 2 8 8 Si 1.86808 * 119.99780 * 21.87313 * 6 4 2 9 9 H 1.48499 * 109.46929 * 179.72656 * 8 6 4 10 10 H 1.48497 * 109.46988 * 299.72146 * 8 6 4 11 11 H 1.48494 * 109.46966 * 59.72377 * 8 6 4 12 12 N 1.46496 * 109.47222 * 120.00733 * 2 1 3 13 13 C 1.46498 * 120.00428 * 59.99757 * 12 2 1 14 14 C 1.34781 * 119.99577 * 239.99838 * 12 2 1 15 15 O 1.21366 * 120.00133 * 5.45663 * 14 12 2 16 16 C 1.49339 * 119.99828 * 185.45044 * 14 12 2 17 17 O 1.21380 * 119.99852 * 5.58930 * 16 14 12 18 18 N 1.34783 * 119.99801 * 185.58718 * 16 14 12 19 19 C 1.39812 * 119.99663 * 185.04837 * 18 16 14 20 20 C 1.39438 * 120.43109 * 322.04070 * 19 18 16 21 21 C 1.38292 * 118.41842 * 179.73557 * 20 19 18 22 22 C 1.38972 * 119.19063 * 0.53641 * 21 20 19 23 23 N 1.39885 * 119.60965 * 179.69965 * 22 21 20 24 24 C 1.35815 * 126.10577 * 180.02562 * 23 22 21 25 25 C 1.35308 * 107.61663 * 180.02562 * 24 23 22 26 26 C 1.39931 * 107.96686 * 0.02562 * 25 24 23 27 27 N 1.30834 * 108.36723 * 359.71390 * 26 25 24 28 28 N 1.32299 * 120.79156 * 359.72502 * 22 21 20 29 29 C 1.31833 * 121.72230 * 0.02562 * 28 22 21 30 30 H 1.08991 * 109.46925 * 294.49430 * 1 2 3 31 31 H 1.08997 * 109.47017 * 54.49747 * 1 2 3 32 32 H 1.09004 * 109.46956 * 174.49171 * 1 2 3 33 33 H 0.97000 * 119.99479 * 355.24117 * 7 6 4 34 34 H 1.09000 * 109.46873 * 95.75111 * 13 12 2 35 35 H 1.08994 * 109.46918 * 215.75592 * 13 12 2 36 36 H 1.09000 * 109.46668 * 335.75940 * 13 12 2 37 37 H 0.97002 * 119.99948 * 5.04773 * 18 16 14 38 38 H 1.08004 * 120.78885 * 359.97438 * 20 19 18 39 39 H 1.08004 * 120.40488 * 180.26648 * 21 20 19 40 40 H 1.07997 * 126.19462 * 0.02562 * 24 23 22 41 41 H 1.07997 * 126.01479 * 179.97438 * 25 24 23 42 42 H 1.08001 * 125.81629 * 180.02562 * 26 25 24 43 43 H 1.08006 * 119.63560 * 179.97438 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5731 -1.6402 -1.1344 6 6 1.8016 -0.1730 -2.4792 7 7 1.8408 -0.9436 -3.5442 8 14 1.4409 1.6510 -2.6590 9 1 1.2373 1.9763 -4.0936 10 1 0.2132 1.9904 -1.8956 11 1 2.5852 2.4363 -2.1309 12 7 2.0184 -0.6907 1.1960 13 6 1.6645 -2.0933 1.4278 14 6 2.7933 -0.0358 2.0832 15 8 3.0051 1.1511 1.9439 16 6 3.3911 -0.7705 3.2378 17 8 3.2640 -1.9746 3.3223 18 7 4.0718 -0.0964 4.1859 19 6 4.7209 -0.7937 5.2093 20 6 4.1378 -1.9293 5.7702 21 6 4.8188 -2.5901 6.7762 22 6 6.0474 -2.0977 7.1998 23 7 6.7408 -2.7556 8.2211 24 6 7.9439 -2.3913 8.7351 25 6 8.2649 -3.2848 9.6992 26 6 7.2306 -4.2239 9.7789 27 7 6.3158 -3.9054 8.8995 28 7 6.5690 -1.0138 6.6489 29 6 5.9514 -0.3607 5.6845 30 1 -0.3633 0.4260 0.9351 31 1 -0.3633 0.5968 -0.8366 32 1 -0.3633 -1.0230 -0.0986 33 1 2.0995 -1.8747 -3.4598 34 1 2.4656 -2.7354 1.0617 35 1 1.5238 -2.2608 2.4956 36 1 0.7408 -2.3272 0.8984 37 1 4.1114 0.8724 4.1582 38 1 3.1790 -2.2866 5.4244 39 1 4.3989 -3.4756 7.2303 40 1 8.5372 -1.5421 8.4297 41 1 9.1619 -3.2753 10.3006 42 1 7.1916 -5.0653 10.4550 43 1 6.4079 0.5209 5.2591 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439330547.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:33 Heat of formation + Delta-G solvation = 58.252750 kcal Electronic energy + Delta-G solvation = -28636.976443 eV Core-core repulsion = 24491.738305 eV Total energy + Delta-G solvation = -4145.238138 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.70151 -42.21725 -41.06062 -39.69629 -37.73778 -36.55336 -34.81917 -33.97764 -33.56429 -32.14174 -31.25169 -30.05877 -28.01110 -26.96720 -26.41242 -25.32796 -24.52512 -22.71085 -21.93299 -21.87770 -20.84424 -19.62606 -19.55435 -19.18193 -18.56107 -17.81193 -17.51750 -17.15803 -16.70688 -16.55518 -16.22158 -15.73665 -15.50097 -15.31380 -15.06742 -14.88112 -14.79643 -14.58396 -14.35318 -14.28431 -13.99229 -13.82135 -13.68040 -13.44246 -13.32770 -13.21522 -12.56216 -12.41065 -12.30372 -11.90213 -11.87926 -11.71244 -11.29635 -11.24034 -11.12579 -10.78080 -10.50141 -10.43917 -10.09973 -9.73613 -9.10348 -8.78331 -6.43073 -0.63873 -0.04148 0.24176 0.94300 1.02915 1.21836 1.44698 1.53856 1.71396 1.82444 1.99332 2.40193 2.42679 2.55448 2.98883 3.09833 3.18596 3.39731 3.60406 3.73542 3.98659 4.06479 4.27597 4.35510 4.43398 4.46640 4.53241 4.61543 4.68058 4.70982 4.71628 4.82160 4.86627 4.96357 5.04124 5.05522 5.23511 5.31700 5.47777 5.58970 5.69975 5.80635 5.98663 5.99038 6.26576 6.30886 6.47360 6.56383 6.73674 6.84470 7.32603 8.56721 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.029365 B = 0.002038 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.297905 B =13736.656403 C =14013.007774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.233 3.767 3 H 0.047 0.953 4 C -0.617 4.617 5 H 0.027 0.973 6 C -0.006 4.006 7 N -0.922 5.922 8 Si 1.073 2.927 9 H -0.284 1.284 10 H -0.238 1.238 11 H -0.273 1.273 12 N -0.560 5.560 13 C 0.094 3.906 14 C 0.493 3.507 15 O -0.553 6.553 16 C 0.520 3.480 17 O -0.508 6.508 18 N -0.625 5.625 19 C 0.074 3.926 20 C -0.052 4.052 21 C -0.150 4.150 22 C 0.342 3.658 23 N -0.341 5.341 24 C 0.060 3.940 25 C -0.259 4.259 26 C 0.066 3.934 27 N -0.324 5.324 28 N -0.494 5.494 29 C 0.131 3.869 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.255 0.745 34 H 0.041 0.959 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.437 0.563 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.195 0.805 41 H 0.187 0.813 42 H 0.227 0.773 43 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.265 -0.701 27.509 28.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.131 3.869 3 H 0.065 0.935 4 C -0.655 4.655 5 H 0.046 0.954 6 C -0.207 4.207 7 N -0.557 5.557 8 Si 0.895 3.105 9 H -0.209 1.209 10 H -0.162 1.162 11 H -0.199 1.199 12 N -0.290 5.290 13 C -0.049 4.049 14 C 0.275 3.725 15 O -0.433 6.433 16 C 0.302 3.698 17 O -0.382 6.382 18 N -0.274 5.274 19 C -0.023 4.023 20 C -0.080 4.080 21 C -0.173 4.173 22 C 0.115 3.885 23 N -0.120 5.120 24 C -0.080 4.080 25 C -0.287 4.287 26 C -0.122 4.122 27 N -0.143 5.143 28 N -0.207 5.207 29 C -0.030 4.030 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.116 0.884 36 H 0.091 0.909 37 H 0.277 0.723 38 H 0.173 0.827 39 H 0.171 0.829 40 H 0.212 0.788 41 H 0.204 0.796 42 H 0.243 0.757 43 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 7.493 0.228 26.051 27.108 hybrid contribution 0.682 -1.447 0.480 1.670 sum 8.175 -1.218 26.530 27.788 Atomic orbital electron populations 1.22321 0.95697 1.01899 1.01060 1.19204 0.92642 0.93662 0.81420 0.93515 1.22210 1.41315 1.09288 0.92662 0.95417 1.26966 0.93388 1.08702 0.91675 1.71000 1.43792 1.07805 1.33065 0.83686 0.79187 0.70830 0.76846 1.20938 1.16197 1.19888 1.48000 1.46150 1.13655 1.21177 1.21941 1.00568 0.79616 1.02730 1.20056 0.81001 0.87130 0.84292 1.90703 1.61223 1.15287 1.76044 1.20156 0.79451 0.87229 0.82940 1.90735 1.56698 1.14377 1.76394 1.42845 1.49638 1.11998 1.22949 1.18803 0.94481 0.96792 0.92232 1.21678 1.00447 0.93652 0.92175 1.21535 0.94268 1.02671 0.98787 1.17924 0.90212 0.90875 0.89466 1.45908 1.16248 1.21873 1.27950 1.23401 0.87374 1.01493 0.95732 1.22094 1.04222 0.97779 1.04578 1.24867 0.91002 1.00215 0.96123 1.77460 1.25093 0.99853 1.11862 1.66932 1.35157 1.07125 1.11498 1.22852 0.88719 0.99694 0.91706 0.92531 0.91903 0.92718 0.93531 0.94041 0.88398 0.90929 0.72259 0.82717 0.82877 0.78775 0.79624 0.75671 0.77956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.00 8.77 71.98 0.63 -5.37 16 2 C 0.23 10.66 2.22 44.25 0.10 10.76 16 3 H 0.05 2.26 5.49 -2.39 -0.01 2.24 16 4 C -0.62 -33.62 8.63 25.60 0.22 -33.40 16 5 H 0.03 1.67 7.79 -2.91 -0.02 1.64 16 6 C -0.01 -0.36 5.30 84.66 0.45 0.09 16 7 N -0.92 -55.56 13.70 21.45 0.29 -55.27 16 8 Si 1.07 48.36 26.54 68.60 1.82 50.18 16 9 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 10 H -0.24 -9.31 5.77 99.48 0.57 -8.73 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 12 N -0.56 -22.55 2.75 -828.50 -2.28 -24.84 16 13 C 0.09 3.31 8.37 127.77 1.07 4.38 16 14 C 0.49 18.16 7.72 87.23 0.67 18.83 16 15 O -0.55 -22.01 15.84 -3.30 -0.05 -22.07 16 16 C 0.52 15.37 7.55 87.23 0.66 16.03 16 17 O -0.51 -16.00 11.03 -3.34 -0.04 -16.04 16 18 N -0.63 -13.78 5.32 -304.46 -1.62 -15.40 16 19 C 0.07 1.54 6.27 38.30 0.24 1.78 16 20 C -0.05 -1.15 8.79 22.57 0.20 -0.95 16 21 C -0.15 -3.35 9.69 22.46 0.22 -3.13 16 22 C 0.34 7.90 7.55 132.75 1.00 8.90 16 23 N -0.34 -7.54 3.81 -192.14 -0.73 -8.27 16 24 C 0.06 1.02 11.10 83.40 0.93 1.94 16 25 C -0.26 -3.24 10.80 22.00 0.24 -3.00 16 26 C 0.07 0.93 12.02 85.25 1.02 1.95 16 27 N -0.32 -6.93 11.83 -56.98 -0.67 -7.61 16 28 N -0.49 -10.38 9.85 -192.20 -1.89 -12.27 16 29 C 0.13 2.35 11.12 84.83 0.94 3.30 16 30 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.06 2.51 5.28 -2.39 -0.01 2.50 16 32 H 0.05 2.12 6.89 -2.39 -0.02 2.10 16 33 H 0.26 15.62 8.73 -92.71 -0.81 14.81 16 34 H 0.04 1.58 8.09 -2.39 -0.02 1.56 16 35 H 0.10 2.97 5.99 -2.39 -0.01 2.95 16 36 H 0.07 2.52 6.55 -2.39 -0.02 2.50 16 37 H 0.44 7.85 8.33 -92.71 -0.77 7.07 16 38 H 0.16 3.51 6.53 -2.91 -0.02 3.49 16 39 H 0.15 3.28 7.68 -2.91 -0.02 3.26 16 40 H 0.20 2.52 8.05 -2.91 -0.02 2.50 16 41 H 0.19 1.06 8.06 -2.91 -0.02 1.04 16 42 H 0.23 1.26 8.06 -2.91 -0.02 1.23 16 43 H 0.20 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -72.12 364.24 3.55 -68.57 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.14 Total: 20.89 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: 8.59 Total: 22.12 kcal Atomic # 7 Polarization: -116.75 SS G_CDS: -6.91 Total: -123.66 kcal Atomic # 8 Polarization: -38.01 SS G_CDS: -0.09 Total: -38.10 kcal Atomic # 14 Polarization: 48.36 SS G_CDS: 1.82 Total: 50.18 kcal Total: -72.12 3.55 -68.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439330547.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.820 kcal (2) G-P(sol) polarization free energy of solvation -72.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds