Wall clock time and date at job start Wed Apr 1 2020 02:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34219 * 125.68936 * 2 1 4 4 C 1.38684 * 107.31929 * 179.97438 * 3 2 1 5 5 C 1.46362 * 126.49863 * 179.97438 * 4 3 2 6 6 C 1.37882 * 120.00015 * 7.31296 * 5 4 3 7 7 C 1.43201 * 120.00400 * 6.81487 * 6 5 4 8 8 N 4.06102 * 102.71256 * 10.10616 * 2 1 3 9 9 C 1.47031 * 120.00178 * 186.81036 * 6 5 4 10 10 O 1.21657 * 119.99697 * 41.25213 * 9 6 5 11 11 N 1.34778 * 119.99774 * 221.25508 * 9 6 5 12 12 C 1.46961 * 120.59823 * 4.27138 * 11 9 6 13 13 C 1.53363 * 108.63759 * 235.25180 * 12 11 9 14 14 N 1.46969 * 108.63116 * 310.57490 * 13 12 11 15 15 C 1.34781 * 120.59298 * 235.19822 * 14 13 12 16 16 O 1.21685 * 120.00147 * 355.09748 * 15 14 13 17 17 C 1.46373 * 119.99711 * 175.09518 * 15 14 13 18 18 H 1.07996 * 120.00044 * 29.64160 * 17 15 14 19 19 C 1.40055 * 119.99777 * 209.64643 * 17 15 14 20 20 N 1.30666 * 119.99870 * 177.06105 * 19 17 15 21 21 Si 1.86797 * 119.99862 * 357.05892 * 19 17 15 22 22 H 1.48493 * 109.47437 * 275.60388 * 21 19 17 23 23 H 1.48505 * 109.47148 * 35.60672 * 21 19 17 24 24 H 1.48497 * 109.46979 * 155.60395 * 21 19 17 25 25 C 1.46965 * 118.81187 * 55.48122 * 14 13 12 26 26 C 1.46971 * 120.58751 * 184.29784 * 11 9 6 27 27 C 1.41670 * 106.99847 * 0.26447 * 4 3 2 28 28 N 1.30357 * 107.99433 * 359.55456 * 27 4 3 29 29 H 1.09004 * 109.46905 * 90.00281 * 1 2 3 30 30 H 1.09005 * 109.47011 * 209.99765 * 1 2 3 31 31 H 1.09001 * 109.47602 * 329.99950 * 1 2 3 32 32 H 1.08001 * 126.34071 * 359.97438 * 3 2 1 33 33 H 1.07996 * 120.00006 * 187.31884 * 5 4 3 34 34 H 1.09004 * 109.60556 * 115.50415 * 12 11 9 35 35 H 1.09000 * 109.74984 * 355.08531 * 12 11 9 36 36 H 1.08998 * 109.61211 * 190.83285 * 13 12 11 37 37 H 1.08998 * 109.75101 * 70.40398 * 13 12 11 38 38 H 0.96996 * 120.00052 * 179.97438 * 20 19 17 39 39 H 1.09004 * 109.60977 * 64.26456 * 25 14 13 40 40 H 1.08996 * 109.60865 * 184.77112 * 25 14 13 41 41 H 1.08994 * 109.60620 * 244.49444 * 26 11 9 42 42 H 1.08998 * 109.61084 * 4.83103 * 26 11 9 43 43 H 1.08005 * 126.00283 * 179.71952 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2480 1.0901 0.0000 4 6 3.5642 0.6530 0.0006 5 6 4.7612 1.4953 0.0003 6 6 4.6434 2.8607 0.1513 7 6 3.3695 3.4405 0.4539 8 7 2.3587 3.9000 0.6951 9 6 5.8259 3.7216 0.0018 10 8 6.6288 3.5035 -0.8858 11 7 6.0203 4.7524 0.8481 12 6 5.1103 4.9721 1.9810 13 6 4.5613 6.4017 1.8986 14 7 5.6870 7.3265 1.7047 15 6 5.8809 8.3579 2.5504 16 8 5.0716 8.5833 3.4307 17 6 7.0650 9.2068 2.4099 18 1 7.5128 9.3524 1.4380 19 6 7.6172 9.8302 3.5359 20 7 8.7073 10.5413 3.4201 21 14 6.7954 9.6451 5.2031 22 1 5.7133 10.6532 5.3363 23 1 6.2191 8.2816 5.3223 24 1 7.8006 9.8532 6.2762 25 6 6.5937 7.1102 0.5685 26 6 7.1460 5.6772 0.6541 27 6 3.5303 -0.7632 -0.0053 28 7 2.2812 -1.1362 0.0005 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.9148 2.1174 -0.0004 33 1 5.7367 1.0473 -0.1183 34 1 5.6535 4.8421 2.9170 35 1 4.2860 4.2603 1.9346 36 1 4.0410 6.6477 2.8242 37 1 3.8717 6.4836 1.0585 38 1 9.0896 10.9734 4.1998 39 1 6.0470 7.2392 -0.3656 40 1 7.4159 7.8242 0.6156 41 1 7.8340 5.5975 1.4957 42 1 7.6681 5.4293 -0.2700 43 1 4.3886 -1.4188 -0.0107 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491104635.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:57 Heat of formation + Delta-G solvation = 85.329560 kcal Electronic energy + Delta-G solvation = -29267.472674 eV Core-core repulsion = 25123.408675 eV Total energy + Delta-G solvation = -4144.063999 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.78586 -40.31237 -38.40011 -37.38427 -36.26250 -34.64438 -33.41417 -33.14804 -32.88115 -31.21061 -30.04022 -28.10141 -27.34342 -26.24629 -24.54441 -23.30845 -22.56042 -21.63657 -21.12311 -20.46083 -19.26502 -18.01574 -17.27534 -16.68539 -16.17924 -16.07887 -15.93554 -15.57214 -15.30655 -14.96342 -14.91085 -14.76282 -14.23061 -14.08356 -13.99144 -13.87867 -13.83681 -13.36159 -13.21570 -12.93708 -12.73697 -12.62057 -12.29614 -12.21253 -12.01128 -11.81304 -11.33358 -11.19558 -11.12855 -10.90484 -10.86900 -10.65977 -10.40371 -10.11299 -9.98709 -9.64251 -9.03433 -8.84250 -8.44533 -8.06769 -7.57144 -6.63549 -4.83958 0.17672 1.41057 1.86941 2.20238 2.36405 2.52916 2.92960 3.24881 3.40171 3.42782 3.66236 3.70245 3.86740 4.07394 4.12681 4.18452 4.34570 4.44813 4.45964 4.58657 4.85303 4.86633 4.94132 5.01093 5.07375 5.14969 5.29407 5.38152 5.49037 5.56955 5.69528 5.73643 5.82926 5.93418 5.99050 6.14914 6.19116 6.26086 6.37741 6.57456 6.96761 7.05527 7.11900 7.36334 7.51254 7.82049 8.06253 8.26809 8.65403 9.04240 9.90174 10.38280 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.021063 B = 0.002552 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.999784 B =10971.123158 C =11720.662863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.358 5.358 3 C 0.089 3.911 4 C -0.260 4.260 5 C 0.114 3.886 6 C -0.163 4.163 7 C 0.271 3.729 8 N -0.426 5.426 9 C 0.576 3.424 10 O -0.534 6.534 11 N -0.597 5.597 12 C 0.089 3.911 13 C 0.106 3.894 14 N -0.631 5.631 15 C 0.561 3.439 16 O -0.609 6.609 17 C -0.536 4.536 18 H 0.093 0.907 19 C 0.103 3.897 20 N -0.833 5.833 21 Si 0.951 3.049 22 H -0.276 1.276 23 H -0.260 1.260 24 H -0.316 1.316 25 C 0.107 3.893 26 C 0.097 3.903 27 C 0.092 3.908 28 N -0.299 5.299 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.190 0.810 33 H 0.160 0.840 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.050 0.950 38 H 0.282 0.718 39 H 0.051 0.949 40 H 0.115 0.885 41 H 0.079 0.921 42 H 0.100 0.900 43 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.434 -22.795 -7.478 25.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.134 5.134 3 C -0.063 4.063 4 C -0.271 4.271 5 C 0.089 3.911 6 C -0.171 4.171 7 C -0.040 4.040 8 N -0.105 5.105 9 C 0.363 3.637 10 O -0.412 6.412 11 N -0.329 5.329 12 C -0.036 4.036 13 C -0.019 4.019 14 N -0.366 5.366 15 C 0.369 3.631 16 O -0.499 6.499 17 C -0.572 4.572 18 H 0.110 0.890 19 C -0.114 4.114 20 N -0.463 5.463 21 Si 0.782 3.218 22 H -0.202 1.202 23 H -0.185 1.185 24 H -0.247 1.247 25 C -0.018 4.018 26 C -0.025 4.025 27 C -0.096 4.096 28 N -0.118 5.118 29 H 0.101 0.899 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.207 0.793 33 H 0.178 0.822 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.116 0.884 37 H 0.068 0.932 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.133 0.867 41 H 0.097 0.903 42 H 0.118 0.882 43 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -11.815 -22.943 -7.089 26.763 hybrid contribution 0.515 0.641 0.569 1.000 sum -11.300 -22.302 -6.519 25.838 Atomic orbital electron populations 1.22081 0.73212 1.05310 1.04221 1.48447 1.07500 1.03803 1.53679 1.24313 0.91250 0.94560 0.96191 1.19433 0.92034 0.93718 1.21948 1.22172 0.97126 0.89471 0.82333 1.18057 0.87798 0.93707 1.17532 1.25359 0.92556 0.92792 0.93319 1.81315 1.11739 1.07348 1.10062 1.17514 0.84332 0.80209 0.81608 1.90827 1.45758 1.71034 1.33597 1.48047 1.29412 1.27806 1.27671 1.22408 0.93444 0.98302 0.89420 1.21550 0.90072 0.87551 1.02755 1.47847 1.28801 1.29606 1.30367 1.18483 0.86426 0.79310 0.78900 1.90315 1.47611 1.74208 1.37764 1.20654 1.11260 1.27948 0.97365 0.88964 1.25630 0.93174 0.90914 1.01698 1.69516 1.17726 1.26061 1.33021 0.85559 0.76635 0.81257 0.78347 1.20234 1.18492 1.24664 1.22002 0.95440 0.95601 0.88743 1.22289 0.87827 0.88765 1.03643 1.24289 0.95292 0.93630 0.96349 1.77146 1.02176 1.07911 1.24567 0.89888 0.88521 0.88828 0.79348 0.82205 0.90148 0.89837 0.88430 0.93179 0.90812 0.93022 0.86685 0.90291 0.88204 0.78471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.42 11.44 59.85 0.68 1.11 16 2 N -0.36 -3.00 3.98 -67.42 -0.27 -3.27 16 3 C 0.09 0.80 10.16 -16.34 -0.17 0.63 16 4 C -0.26 -2.17 6.02 -105.16 -0.63 -2.80 16 5 C 0.11 0.92 9.81 -36.45 -0.36 0.56 16 6 C -0.16 -1.76 5.25 -104.54 -0.55 -2.31 16 7 C 0.27 3.16 8.84 -22.47 -0.20 2.96 16 8 N -0.43 -5.42 16.81 41.85 0.70 -4.71 16 9 C 0.58 7.77 7.29 -12.70 -0.09 7.68 16 10 O -0.53 -8.29 16.34 5.23 0.09 -8.21 16 11 N -0.60 -8.62 2.95 -173.63 -0.51 -9.13 16 12 C 0.09 1.30 6.06 -3.60 -0.02 1.27 16 13 C 0.11 1.90 6.58 -3.60 -0.02 1.88 16 14 N -0.63 -13.19 2.94 -173.88 -0.51 -13.70 16 15 C 0.56 14.44 7.09 -12.99 -0.09 14.35 16 16 O -0.61 -17.20 12.13 5.20 0.06 -17.13 16 17 C -0.54 -14.54 9.05 -35.63 -0.32 -14.86 16 18 H 0.09 2.49 6.48 -52.49 -0.34 2.15 16 19 C 0.10 2.85 5.52 -17.37 -0.10 2.75 16 20 N -0.83 -23.09 13.92 55.55 0.77 -22.32 16 21 Si 0.95 24.44 26.13 -169.99 -4.44 20.00 16 22 H -0.28 -7.33 7.11 56.52 0.40 -6.92 16 23 H -0.26 -6.95 6.47 56.52 0.37 -6.58 16 24 H -0.32 -7.72 7.11 56.52 0.40 -7.32 16 25 C 0.11 1.87 6.53 -3.37 -0.02 1.85 16 26 C 0.10 1.47 6.60 -3.37 -0.02 1.45 16 27 C 0.09 0.68 12.04 -16.87 -0.20 0.48 16 28 N -0.30 -2.76 12.48 30.93 0.39 -2.38 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.19 1.77 4.27 -52.49 -0.22 1.55 16 33 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.08 1.08 4.02 -51.93 -0.21 0.87 16 36 H 0.10 1.92 7.02 -51.93 -0.36 1.56 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.28 7.22 8.29 -40.82 -0.34 6.89 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.12 2.15 5.52 -51.93 -0.29 1.86 16 41 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.10 1.41 7.01 -51.93 -0.36 1.05 16 43 H 0.20 0.71 8.06 -52.48 -0.42 0.29 16 LS Contribution 362.35 15.07 5.46 5.46 Total: -1.00 -35.28 362.35 -5.14 -40.41 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -4.76 Total: -2.02 kcal Atomic # 6 Polarization: 19.12 SS G_CDS: -2.12 Total: 17.00 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: 0.57 Total: -55.51 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: 0.15 Total: -25.34 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -4.44 Total: 20.00 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.28 -5.14 -40.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491104635.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.744 kcal (2) G-P(sol) polarization free energy of solvation -35.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds