Wall clock time and date at job start Wed Apr 1 2020 02:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45195 * 109.47104 * 2 1 4 4 C 1.34695 * 116.99575 * 184.47263 * 3 2 1 5 5 O 1.21530 * 120.00413 * 5.07059 * 4 3 2 6 6 N 1.34781 * 119.99688 * 185.06807 * 4 3 2 7 7 N 1.40103 * 120.00068 * 5.28053 * 6 4 3 8 8 C 1.29755 * 119.99992 * 175.69595 * 7 6 4 9 9 C 1.47433 * 119.99718 * 182.89812 * 8 7 6 10 10 C 1.36739 * 126.68367 * 174.14986 * 9 8 7 11 11 N 1.34655 * 108.05319 * 180.24660 * 10 9 8 12 12 C 1.46504 * 125.24976 * 179.75709 * 11 10 9 13 13 C 1.50700 * 109.46994 * 124.97057 * 12 11 10 14 14 H 1.07999 * 120.00260 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99747 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00291 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99898 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47619 * 60.00164 * 17 15 13 19 19 H 1.48503 * 109.47237 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47334 * 299.99713 * 17 15 13 21 21 N 1.39816 * 109.49360 * 359.74853 * 11 10 9 22 22 C 1.31557 * 108.81722 * 0.02562 * 21 11 10 23 23 C 1.48217 * 126.49839 * 179.97438 * 22 21 11 24 24 C 1.39841 * 120.90956 * 315.09689 * 23 22 21 25 25 C 1.37938 * 119.01396 * 179.97438 * 24 23 22 26 26 N 1.31942 * 120.88613 * 0.02562 * 25 24 23 27 27 C 1.31943 * 122.02460 * 359.97438 * 26 25 24 28 28 C 1.37943 * 120.88048 * 0.02562 * 27 26 25 29 29 H 1.08997 * 109.47264 * 304.99451 * 1 2 3 30 30 H 1.09003 * 109.46702 * 64.98946 * 1 2 3 31 31 H 1.08994 * 109.47186 * 184.98957 * 1 2 3 32 32 H 1.08999 * 109.47206 * 239.99965 * 2 1 3 33 33 H 1.09006 * 109.46750 * 119.99986 * 2 1 3 34 34 H 0.97002 * 119.99839 * 185.27812 * 6 4 3 35 35 H 1.08000 * 119.99758 * 2.89777 * 8 7 6 36 36 H 1.08003 * 125.97493 * 359.97438 * 10 9 8 37 37 H 1.09007 * 109.46676 * 244.96865 * 12 11 10 38 38 H 1.09000 * 109.47021 * 4.96866 * 12 11 10 39 39 H 0.96995 * 119.99975 * 179.97438 * 16 15 13 40 40 H 1.07996 * 120.49187 * 359.95759 * 24 23 22 41 41 H 1.08005 * 119.56014 * 180.02562 * 25 24 23 42 42 H 1.07992 * 119.56087 * 179.97438 * 27 26 25 43 43 H 1.08005 * 120.48924 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3459 1.5465 -0.0936 5 8 4.0759 0.5903 -0.2657 6 7 3.8691 2.7848 0.0035 7 7 3.0417 3.8727 0.3118 8 6 3.5571 5.0504 0.4876 9 6 2.6949 6.1820 0.8746 10 6 3.1031 7.4453 1.2023 11 7 2.0098 8.1735 1.4981 12 6 2.0160 9.5810 1.9046 13 6 1.1190 10.3725 0.9880 14 1 0.5970 9.8768 0.1829 15 6 0.9649 11.7295 1.1772 16 7 1.6002 12.3331 2.1579 17 14 -0.1474 12.7104 0.0415 18 1 -1.5311 12.1776 0.1222 19 1 -0.1411 14.1371 0.4534 20 1 0.3462 12.5967 -1.3544 21 7 0.8679 7.3791 1.3572 22 6 1.2339 6.1730 0.9804 23 6 0.3382 5.0216 0.7179 24 6 -0.7067 4.7101 1.5935 25 6 -1.5169 3.6301 1.3109 26 7 -1.3158 2.8963 0.2330 27 6 -0.3419 3.1558 -0.6185 28 6 0.5148 4.2171 -0.4121 29 1 -0.3633 0.5893 0.8418 30 1 -0.3633 0.4345 -0.9313 31 1 -0.3633 -1.0237 0.0894 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8901 34 1 4.8184 2.9229 -0.1399 35 1 4.6176 5.2017 0.3505 36 1 4.1243 7.7962 1.2246 37 1 1.6534 9.6648 2.9292 38 1 3.0318 9.9718 1.8455 39 1 1.4921 13.2878 2.2907 40 1 -0.8765 5.3060 2.4780 41 1 -2.3268 3.3818 1.9810 42 1 -0.2133 2.5286 -1.4881 43 1 1.3102 4.4236 -1.1130 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496003683.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:09 Heat of formation + Delta-G solvation = 53.648695 kcal Electronic energy + Delta-G solvation = -29364.439996 eV Core-core repulsion = 25219.002212 eV Total energy + Delta-G solvation = -4145.437784 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.93982 -41.42056 -40.56065 -38.25246 -37.41699 -35.81675 -34.47373 -33.68126 -32.32605 -32.23980 -31.94056 -30.68882 -28.72823 -25.72422 -24.98020 -24.32313 -24.19423 -23.24952 -22.45103 -21.39618 -20.83817 -19.24096 -18.82178 -18.58118 -17.83101 -17.67154 -17.10789 -17.06615 -16.87533 -16.44210 -16.19538 -15.77072 -15.41664 -15.20207 -14.76179 -14.56450 -14.47750 -14.41412 -14.15110 -13.83227 -13.60781 -13.51100 -13.37549 -12.96671 -12.83673 -12.72826 -12.49855 -12.36566 -12.25789 -11.97731 -11.83669 -11.70349 -11.42859 -11.31053 -10.77415 -10.74722 -10.61067 -10.32644 -9.90890 -9.79458 -8.85371 -8.33723 -6.46933 0.07780 0.41208 0.49030 1.06478 1.31563 1.38936 1.41094 1.48841 1.68464 1.76042 2.27852 2.34806 2.44530 2.99259 3.10233 3.40344 3.70717 3.73628 3.96949 4.10181 4.15508 4.18656 4.28445 4.30074 4.36084 4.42282 4.50090 4.63560 4.75912 4.85926 4.93831 4.95318 5.00966 5.07297 5.08554 5.14836 5.21636 5.46585 5.49976 5.55805 5.63906 5.82718 5.90008 5.90974 6.14184 6.59241 6.62276 6.87888 7.17383 7.23210 7.44314 8.73184 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.016372 B = 0.002846 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.806621 B = 9837.229573 C =11016.380565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.073 3.927 3 O -0.345 6.345 4 C 0.678 3.322 5 O -0.600 6.600 6 N -0.549 5.549 7 N -0.277 5.277 8 C 0.190 3.810 9 C -0.229 4.229 10 C 0.110 3.890 11 N -0.342 5.342 12 C 0.268 3.732 13 C -0.548 4.548 14 H 0.052 0.948 15 C 0.024 3.976 16 N -0.918 5.918 17 Si 0.963 3.037 18 H -0.277 1.277 19 H -0.275 1.275 20 H -0.268 1.268 21 N -0.305 5.305 22 C 0.107 3.893 23 C 0.029 3.971 24 C -0.162 4.162 25 C 0.091 3.909 26 N -0.484 5.484 27 C 0.109 3.891 28 C -0.103 4.103 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.417 0.583 35 H 0.165 0.835 36 H 0.224 0.776 37 H 0.024 0.976 38 H 0.069 0.931 39 H 0.272 0.728 40 H 0.126 0.874 41 H 0.178 0.822 42 H 0.166 0.834 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.004 -19.166 -3.936 19.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.001 4.001 3 O -0.257 6.257 4 C 0.433 3.567 5 O -0.489 6.489 6 N -0.301 5.301 7 N -0.085 5.085 8 C -0.020 4.020 9 C -0.244 4.244 10 C -0.042 4.042 11 N -0.120 5.120 12 C 0.150 3.850 13 C -0.586 4.586 14 H 0.070 0.930 15 C -0.177 4.177 16 N -0.556 5.556 17 Si 0.788 3.212 18 H -0.203 1.203 19 H -0.200 1.200 20 H -0.193 1.193 21 N -0.125 5.125 22 C -0.061 4.061 23 C 0.019 3.981 24 C -0.184 4.184 25 C -0.065 4.065 26 N -0.194 5.194 27 C -0.047 4.047 28 C -0.124 4.124 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.262 0.738 35 H 0.182 0.818 36 H 0.240 0.760 37 H 0.042 0.958 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.144 0.856 41 H 0.195 0.805 42 H 0.183 0.817 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.750 -19.826 -3.742 20.190 hybrid contribution 2.094 1.642 -0.288 2.676 sum 2.843 -18.184 -4.030 18.841 Atomic orbital electron populations 1.21833 0.90430 1.03729 1.03751 1.23240 0.96451 0.78036 1.02420 1.86486 1.20376 1.33588 1.85254 1.17649 0.82051 0.82041 0.74977 1.91046 1.61639 1.39121 1.57126 1.45545 1.09870 1.03030 1.71624 1.75213 1.20584 0.96320 1.16432 1.23633 0.98348 0.88334 0.91672 1.19247 0.90381 0.93792 1.21013 1.23280 0.95095 0.90090 0.95760 1.49034 1.02939 1.11489 1.48558 1.19440 0.99397 0.70769 0.95399 1.21347 1.28868 0.93350 1.15078 0.93008 1.25612 0.96956 0.98266 0.96873 1.69959 1.42993 1.11494 1.31176 0.85528 0.79002 0.77532 0.79187 1.20293 1.19974 1.19342 1.77497 1.10143 1.02535 1.22373 1.22212 0.92893 0.91666 0.99349 1.18092 0.93119 0.91626 0.95300 1.22239 0.95922 0.99604 1.00592 1.22866 0.98279 0.90759 0.94600 1.67637 1.19402 1.28917 1.03434 1.22628 0.89896 0.94273 0.97929 1.21863 0.99139 0.95066 0.96369 0.92268 0.91180 0.88350 0.90891 0.91782 0.73848 0.81841 0.75971 0.95815 0.91332 0.91843 0.85640 0.80541 0.81691 0.85424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.40 71.98 0.68 -1.49 16 2 C 0.07 1.38 6.28 71.98 0.45 1.83 16 3 O -0.34 -8.28 8.83 -56.05 -0.50 -8.78 16 4 C 0.68 17.24 8.80 129.79 1.14 18.38 16 5 O -0.60 -17.74 16.89 19.74 0.33 -17.41 16 6 N -0.55 -11.57 6.27 -296.93 -1.86 -13.43 16 7 N -0.28 -6.43 7.24 -52.20 -0.38 -6.81 16 8 C 0.19 3.88 10.93 87.42 0.96 4.84 16 9 C -0.23 -6.48 6.24 -19.06 -0.12 -6.60 16 10 C 0.11 3.18 11.34 83.91 0.95 4.13 16 11 N -0.34 -13.67 3.64 -350.82 -1.28 -14.95 16 12 C 0.27 12.38 6.22 85.63 0.53 12.92 16 13 C -0.55 -28.79 9.21 25.60 0.24 -28.55 16 14 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 15 C 0.02 1.25 5.46 84.65 0.46 1.71 16 16 N -0.92 -49.31 13.29 21.45 0.28 -49.03 16 17 Si 0.96 41.88 29.54 68.60 2.03 43.90 16 18 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 19 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 20 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 21 N -0.30 -12.89 12.34 -44.57 -0.55 -13.44 16 22 C 0.11 3.77 6.92 43.99 0.30 4.08 16 23 C 0.03 0.90 5.47 -19.85 -0.11 0.80 16 24 C -0.16 -4.74 9.89 22.59 0.22 -4.52 16 25 C 0.09 2.25 11.17 84.61 0.95 3.19 16 26 N -0.48 -11.94 9.45 -196.16 -1.85 -13.79 16 27 C 0.11 2.63 9.10 84.61 0.77 3.40 16 28 C -0.10 -2.81 7.69 22.59 0.17 -2.64 16 29 H 0.06 1.13 7.40 -2.39 -0.02 1.11 16 30 H 0.07 1.07 7.07 -2.39 -0.02 1.05 16 31 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 1.30 7.98 -2.39 -0.02 1.28 16 33 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.42 6.42 8.76 -213.32 -1.87 4.56 16 35 H 0.16 1.81 8.03 -2.91 -0.02 1.78 16 36 H 0.22 4.13 8.06 -2.91 -0.02 4.10 16 37 H 0.02 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.07 2.99 8.05 -2.39 -0.02 2.97 16 39 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 40 H 0.13 3.72 8.06 -2.91 -0.02 3.70 16 41 H 0.18 3.25 8.06 -2.91 -0.02 3.23 16 42 H 0.17 3.24 7.35 -2.91 -0.02 3.22 16 43 H 0.13 3.43 7.09 -2.91 -0.02 3.41 16 Total: -1.00 -68.42 379.36 3.02 -65.40 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -0.81 Total: 16.85 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 7.60 Total: 11.48 kcal Atomic # 7 Polarization: -105.81 SS G_CDS: -5.63 Total: -111.45 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.16 Total: -26.19 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.90 kcal Total: -68.42 3.02 -65.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496003683.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.048 kcal (2) G-P(sol) polarization free energy of solvation -68.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds