Wall clock time and date at job start Wed Apr 1 2020 01:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47045 * 2 1 4 4 C 1.50697 * 109.47047 * 239.99556 * 2 1 3 5 5 H 1.08003 * 120.00370 * 245.65422 * 4 2 1 6 6 C 1.37883 * 119.99810 * 65.66458 * 4 2 1 7 7 N 1.31519 * 119.99799 * 197.82108 * 6 4 2 8 8 Si 1.86794 * 119.99975 * 18.09287 * 6 4 2 9 9 H 1.48504 * 109.46909 * 179.73043 * 8 6 4 10 10 H 1.48498 * 109.47052 * 299.72438 * 8 6 4 11 11 H 1.48496 * 109.47306 * 59.73009 * 8 6 4 12 12 N 1.46500 * 109.46867 * 119.99947 * 2 1 3 13 13 C 1.46502 * 120.00368 * 60.00028 * 12 2 1 14 14 C 1.34780 * 119.99656 * 240.00314 * 12 2 1 15 15 O 1.21363 * 120.00187 * 5.67265 * 14 12 2 16 16 C 1.49330 * 119.99815 * 185.68344 * 14 12 2 17 17 O 1.21403 * 120.00145 * 5.77583 * 16 14 12 18 18 N 1.34774 * 120.00096 * 185.78407 * 16 14 12 19 19 C 1.40433 * 120.00274 * 179.97438 * 18 16 14 20 20 C 1.40446 * 126.09280 * 359.68867 * 19 18 16 21 21 N 1.30797 * 108.37186 * 179.81280 * 20 19 18 22 22 N 1.40060 * 108.41539 * 0.44446 * 21 20 19 23 23 C 1.39786 * 126.05545 * 179.69316 * 22 21 20 24 24 C 1.38955 * 119.68812 * 359.75490 * 23 22 21 25 25 C 1.38408 * 119.10325 * 179.75444 * 24 23 22 26 26 C 1.38797 * 118.48631 * 0.50772 * 25 24 23 27 27 C 1.38121 * 119.29563 * 359.73378 * 26 25 24 28 28 N 1.31892 * 120.84129 * 0.02562 * 27 26 25 29 29 C 1.35820 * 126.09429 * 179.97438 * 19 18 16 30 30 H 1.09004 * 109.47266 * 174.27011 * 1 2 3 31 31 H 1.09000 * 109.47075 * 294.27508 * 1 2 3 32 32 H 1.08996 * 109.47294 * 54.27692 * 1 2 3 33 33 H 0.96998 * 119.99618 * 355.23334 * 7 6 4 34 34 H 1.08998 * 109.46699 * 95.61433 * 13 12 2 35 35 H 1.08996 * 109.46873 * 215.61600 * 13 12 2 36 36 H 1.08999 * 109.46463 * 335.61391 * 13 12 2 37 37 H 0.97004 * 119.99754 * 359.97438 * 18 16 14 38 38 H 1.07995 * 125.81047 * 0.02562 * 20 19 18 39 39 H 1.08003 * 120.44724 * 0.02562 * 24 23 22 40 40 H 1.08000 * 120.75687 * 180.23830 * 25 24 23 41 41 H 1.08003 * 120.35473 * 179.70990 * 26 25 24 42 42 H 1.08002 * 119.57861 * 180.02562 * 27 26 25 43 43 H 1.08004 * 126.24079 * 0.04318 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5759 -1.6388 -1.1339 6 6 1.7982 -0.1753 -2.4794 7 7 1.9107 -0.9307 -3.5501 8 14 1.3286 1.6244 -2.6512 9 1 1.1392 1.9516 -4.0873 10 1 0.0643 1.8786 -1.9148 11 1 2.4087 2.4738 -2.0883 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0355 2.0834 15 8 3.0017 1.1521 1.9462 16 6 3.3950 -0.7712 3.2351 17 8 3.2743 -1.9765 3.3154 18 7 4.0723 -0.0970 4.1855 19 6 4.6379 -0.7887 5.2689 20 6 4.5714 -2.1738 5.4917 21 7 5.2169 -2.4450 6.5965 22 7 5.7107 -1.2462 7.1262 23 6 6.4509 -1.1103 8.3042 24 6 6.7497 -2.2355 9.0628 25 6 7.4877 -2.0877 10.2244 26 6 7.8933 -0.8126 10.5933 27 6 7.5558 0.2618 9.7935 28 7 6.8555 0.0891 8.6893 29 6 5.3422 -0.2368 6.2907 30 1 -0.3634 -1.0226 -0.1026 31 1 -0.3633 0.4225 0.9368 32 1 -0.3634 0.6000 -0.8343 33 1 2.2251 -1.8446 -3.4679 34 1 2.4644 -2.7354 1.0599 35 1 1.5260 -2.2611 2.4961 36 1 0.7394 -2.3264 0.9008 37 1 4.1690 0.8661 4.1212 38 1 4.0750 -2.8928 4.8570 39 1 6.4145 -3.2127 8.7480 40 1 7.7384 -2.9444 10.8323 41 1 8.4663 -0.6619 11.4963 42 1 7.8694 1.2560 10.0760 43 1 5.5679 0.8117 6.4175 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000525885833.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:56 Heat of formation + Delta-G solvation = 80.987315 kcal Electronic energy + Delta-G solvation = -28538.812802 eV Core-core repulsion = 24394.560509 eV Total energy + Delta-G solvation = -4144.252293 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.01748 -40.65990 -40.06769 -38.22309 -36.07598 -34.94633 -33.66971 -32.87300 -32.75633 -30.47356 -30.30182 -29.17331 -26.44112 -25.29737 -24.68255 -24.31631 -23.78672 -22.01183 -21.31649 -20.44244 -19.15167 -18.55866 -17.62940 -17.30742 -16.93993 -16.80842 -16.23267 -16.09785 -15.73022 -15.59685 -15.28312 -14.75484 -14.42591 -14.27824 -13.94249 -13.73672 -13.69130 -13.26114 -13.13027 -12.83107 -12.59865 -12.54419 -12.08116 -11.80589 -11.70053 -11.43148 -11.29086 -11.28489 -10.89070 -10.58647 -10.55004 -10.35922 -10.15913 -9.97478 -9.81810 -9.18647 -9.15561 -9.01489 -8.39080 -8.03394 -7.88675 -6.55414 -4.19778 0.22699 0.68857 1.45705 1.69446 1.82376 2.57946 2.59437 3.32677 3.33028 3.44289 3.57092 3.58837 3.79219 3.97600 4.09190 4.37558 4.40951 4.51750 4.55347 4.65325 4.76534 4.82776 5.12247 5.16951 5.22117 5.26646 5.49429 5.66058 5.77673 5.86559 5.98442 6.12708 6.25165 6.35552 6.41832 6.48129 6.52903 6.70614 6.84809 6.90289 6.98074 7.14252 7.23917 7.50447 7.67260 7.82888 8.09644 8.27696 8.42129 8.81296 9.48816 10.83110 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.030479 B = 0.001999 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.448869 B =14003.904621 C =14453.507945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.232 3.768 3 H 0.057 0.943 4 C -0.614 4.614 5 H 0.063 0.937 6 C 0.038 3.962 7 N -0.897 5.897 8 Si 1.040 2.960 9 H -0.283 1.283 10 H -0.272 1.272 11 H -0.278 1.278 12 N -0.546 5.546 13 C 0.087 3.913 14 C 0.498 3.502 15 O -0.538 6.538 16 C 0.513 3.487 17 O -0.506 6.506 18 N -0.620 5.620 19 C 0.016 3.984 20 C 0.079 3.921 21 N -0.275 5.275 22 N -0.325 5.325 23 C 0.382 3.618 24 C -0.168 4.168 25 C -0.050 4.050 26 C -0.192 4.192 27 C 0.135 3.865 28 N -0.509 5.509 29 C 0.043 3.957 30 H 0.053 0.947 31 H 0.029 0.971 32 H 0.068 0.932 33 H 0.269 0.731 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.424 0.576 38 H 0.219 0.781 39 H 0.149 0.851 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.167 0.833 43 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.752 -0.145 28.098 29.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.131 3.869 3 H 0.075 0.925 4 C -0.652 4.652 5 H 0.082 0.918 6 C -0.169 4.169 7 N -0.530 5.530 8 Si 0.867 3.133 9 H -0.208 1.208 10 H -0.198 1.198 11 H -0.204 1.204 12 N -0.276 5.276 13 C -0.056 4.056 14 C 0.279 3.721 15 O -0.417 6.417 16 C 0.296 3.704 17 O -0.380 6.380 18 N -0.267 5.267 19 C -0.088 4.088 20 C -0.111 4.111 21 N -0.093 5.093 22 N -0.104 5.104 23 C 0.154 3.846 24 C -0.190 4.190 25 C -0.077 4.077 26 C -0.213 4.213 27 C -0.023 4.023 28 N -0.223 5.223 29 C -0.101 4.101 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.262 0.738 38 H 0.235 0.765 39 H 0.167 0.833 40 H 0.162 0.838 41 H 0.160 0.840 42 H 0.184 0.816 43 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 8.446 0.578 27.176 28.464 hybrid contribution 0.593 -0.858 0.938 1.403 sum 9.040 -0.281 28.114 29.533 Atomic orbital electron populations 1.22539 0.98032 1.01643 0.99933 1.19419 0.90976 0.94708 0.81807 0.92481 1.22137 1.41677 1.10696 0.90699 0.91849 1.25695 0.94354 1.05102 0.91750 1.70872 1.41084 1.09671 1.31335 0.84129 0.77467 0.75320 0.76340 1.20845 1.19807 1.20413 1.47971 1.45469 1.12819 1.21355 1.21916 1.01170 0.81076 1.01409 1.19538 0.81784 0.87153 0.83649 1.90717 1.61210 1.14459 1.75328 1.20695 0.78958 0.87539 0.83224 1.90588 1.57284 1.14121 1.76050 1.42528 1.51827 1.11907 1.20412 1.17774 1.05918 0.92465 0.92624 1.24904 0.97014 0.95195 0.94017 1.77487 1.16587 1.03001 1.12255 1.45206 1.42102 1.05703 1.17406 1.17636 0.91712 0.90351 0.84904 1.21643 1.01776 0.99566 0.96020 1.21539 0.93441 0.98088 0.94584 1.22160 1.03380 0.93486 1.02288 1.22542 0.91951 0.99825 0.87992 1.66878 1.13945 1.23379 1.18088 1.22083 1.01014 0.95745 0.91209 0.92818 0.95201 0.91371 0.92064 0.92425 0.90671 0.91100 0.73796 0.76472 0.83284 0.83827 0.84049 0.81617 0.79487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.45 8.74 37.16 0.32 -3.12 16 2 C 0.23 5.49 2.21 -69.08 -0.15 5.34 16 3 H 0.06 1.44 5.56 -51.93 -0.29 1.15 16 4 C -0.61 -16.68 8.67 -34.44 -0.30 -16.98 16 5 H 0.06 1.86 7.80 -52.48 -0.41 1.45 16 6 C 0.04 1.05 5.34 -17.82 -0.10 0.96 16 7 N -0.90 -26.67 13.70 55.43 0.76 -25.91 16 8 Si 1.04 24.62 26.45 -169.99 -4.50 20.13 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.27 -5.84 5.51 56.52 0.31 -5.53 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 N -0.55 -11.46 2.75 -175.82 -0.48 -11.94 16 13 C 0.09 1.58 8.36 59.85 0.50 2.08 16 14 C 0.50 9.82 7.72 -11.64 -0.09 9.73 16 15 O -0.54 -11.54 15.83 5.49 0.09 -11.45 16 16 C 0.51 8.40 7.67 -11.64 -0.09 8.32 16 17 O -0.51 -8.41 10.53 5.45 0.06 -8.36 16 18 N -0.62 -8.40 5.45 -10.48 -0.06 -8.46 16 19 C 0.02 0.21 6.90 -83.95 -0.58 -0.37 16 20 C 0.08 1.06 10.84 -17.16 -0.19 0.88 16 21 N -0.27 -3.66 11.82 30.74 0.36 -3.29 16 22 N -0.32 -4.04 3.81 -11.92 -0.05 -4.08 16 23 C 0.38 4.16 7.55 -154.39 -1.17 3.00 16 24 C -0.17 -1.46 9.70 -39.25 -0.38 -1.84 16 25 C -0.05 -0.29 10.17 -39.31 -0.40 -0.69 16 26 C -0.19 -0.96 10.11 -39.42 -0.40 -1.36 16 27 C 0.13 0.88 11.18 -17.57 -0.20 0.68 16 28 N -0.51 -5.02 9.86 -12.30 -0.12 -5.14 16 29 C 0.04 0.50 11.13 -16.52 -0.18 0.32 16 30 H 0.05 1.09 6.90 -51.93 -0.36 0.74 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 1.47 4.85 -51.93 -0.25 1.21 16 33 H 0.27 7.98 8.73 -40.82 -0.36 7.63 16 34 H 0.06 1.08 8.09 -51.93 -0.42 0.66 16 35 H 0.07 1.22 6.00 -51.93 -0.31 0.90 16 36 H 0.07 1.26 6.55 -51.93 -0.34 0.92 16 37 H 0.42 5.05 8.31 -40.82 -0.34 4.71 16 38 H 0.22 2.93 5.91 -52.49 -0.31 2.62 16 39 H 0.15 1.28 7.69 -52.48 -0.40 0.88 16 40 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 41 H 0.14 0.29 8.06 -52.48 -0.42 -0.13 16 42 H 0.17 0.57 8.06 -52.49 -0.42 0.15 16 43 H 0.19 1.75 8.05 -52.48 -0.42 1.32 16 LS Contribution 362.94 15.07 5.47 5.47 Total: -1.00 -33.04 362.94 -6.65 -39.69 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -4.79 Total: 6.42 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: -3.39 Total: 6.93 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: 0.41 Total: -58.83 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: 0.14 Total: -19.81 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -4.50 Total: 20.13 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.04 -6.65 -39.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525885833.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.673 kcal (2) G-P(sol) polarization free energy of solvation -33.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds