Wall clock time and date at job start Wed Apr 1 2020 01:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47045 * 2 1 4 4 C 1.50697 * 109.47047 * 239.99556 * 2 1 3 5 5 H 1.08003 * 120.00370 * 245.65422 * 4 2 1 6 6 C 1.37883 * 119.99810 * 65.66458 * 4 2 1 7 7 N 1.31519 * 119.99799 * 197.82108 * 6 4 2 8 8 Si 1.86794 * 119.99975 * 18.09287 * 6 4 2 9 9 H 1.48504 * 109.46909 * 179.73043 * 8 6 4 10 10 H 1.48498 * 109.47052 * 299.72438 * 8 6 4 11 11 H 1.48496 * 109.47306 * 59.73009 * 8 6 4 12 12 N 1.46500 * 109.46867 * 119.99947 * 2 1 3 13 13 C 1.46502 * 120.00368 * 60.00028 * 12 2 1 14 14 C 1.34780 * 119.99656 * 240.00314 * 12 2 1 15 15 O 1.21363 * 120.00187 * 5.67265 * 14 12 2 16 16 C 1.49330 * 119.99815 * 185.68344 * 14 12 2 17 17 O 1.21403 * 120.00145 * 5.77583 * 16 14 12 18 18 N 1.34774 * 120.00096 * 185.78407 * 16 14 12 19 19 C 1.40433 * 120.00274 * 179.97438 * 18 16 14 20 20 C 1.40446 * 126.09280 * 359.68867 * 19 18 16 21 21 N 1.30797 * 108.37186 * 179.81280 * 20 19 18 22 22 N 1.40060 * 108.41539 * 0.44446 * 21 20 19 23 23 C 1.39786 * 126.05545 * 179.69316 * 22 21 20 24 24 C 1.38955 * 119.68812 * 359.75490 * 23 22 21 25 25 C 1.38408 * 119.10325 * 179.75444 * 24 23 22 26 26 C 1.38797 * 118.48631 * 0.50772 * 25 24 23 27 27 C 1.38121 * 119.29563 * 359.73378 * 26 25 24 28 28 N 1.31892 * 120.84129 * 0.02562 * 27 26 25 29 29 C 1.35820 * 126.09429 * 179.97438 * 19 18 16 30 30 H 1.09004 * 109.47266 * 174.27011 * 1 2 3 31 31 H 1.09000 * 109.47075 * 294.27508 * 1 2 3 32 32 H 1.08996 * 109.47294 * 54.27692 * 1 2 3 33 33 H 0.96998 * 119.99618 * 355.23334 * 7 6 4 34 34 H 1.08998 * 109.46699 * 95.61433 * 13 12 2 35 35 H 1.08996 * 109.46873 * 215.61600 * 13 12 2 36 36 H 1.08999 * 109.46463 * 335.61391 * 13 12 2 37 37 H 0.97004 * 119.99754 * 359.97438 * 18 16 14 38 38 H 1.07995 * 125.81047 * 0.02562 * 20 19 18 39 39 H 1.08003 * 120.44724 * 0.02562 * 24 23 22 40 40 H 1.08000 * 120.75687 * 180.23830 * 25 24 23 41 41 H 1.08003 * 120.35473 * 179.70990 * 26 25 24 42 42 H 1.08002 * 119.57861 * 180.02562 * 27 26 25 43 43 H 1.08004 * 126.24079 * 0.04318 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5759 -1.6388 -1.1339 6 6 1.7982 -0.1753 -2.4794 7 7 1.9107 -0.9307 -3.5501 8 14 1.3286 1.6244 -2.6512 9 1 1.1392 1.9516 -4.0873 10 1 0.0643 1.8786 -1.9148 11 1 2.4087 2.4738 -2.0883 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0355 2.0834 15 8 3.0017 1.1521 1.9462 16 6 3.3950 -0.7712 3.2351 17 8 3.2743 -1.9765 3.3154 18 7 4.0723 -0.0970 4.1855 19 6 4.6379 -0.7887 5.2689 20 6 4.5714 -2.1738 5.4917 21 7 5.2169 -2.4450 6.5965 22 7 5.7107 -1.2462 7.1262 23 6 6.4509 -1.1103 8.3042 24 6 6.7497 -2.2355 9.0628 25 6 7.4877 -2.0877 10.2244 26 6 7.8933 -0.8126 10.5933 27 6 7.5558 0.2618 9.7935 28 7 6.8555 0.0891 8.6893 29 6 5.3422 -0.2368 6.2907 30 1 -0.3634 -1.0226 -0.1026 31 1 -0.3633 0.4225 0.9368 32 1 -0.3634 0.6000 -0.8343 33 1 2.2251 -1.8446 -3.4679 34 1 2.4644 -2.7354 1.0599 35 1 1.5260 -2.2611 2.4961 36 1 0.7394 -2.3264 0.9008 37 1 4.1690 0.8661 4.1212 38 1 4.0750 -2.8928 4.8570 39 1 6.4145 -3.2127 8.7480 40 1 7.7384 -2.9444 10.8323 41 1 8.4663 -0.6619 11.4963 42 1 7.8694 1.2560 10.0760 43 1 5.5679 0.8117 6.4175 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000525885833.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:55 Heat of formation + Delta-G solvation = 58.438396 kcal Electronic energy + Delta-G solvation = -28539.790596 eV Core-core repulsion = 24394.560509 eV Total energy + Delta-G solvation = -4145.230087 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.96637 -41.83204 -40.91792 -39.65438 -37.67336 -36.19836 -34.77437 -34.41684 -33.47213 -32.13021 -31.32301 -30.06457 -27.95898 -26.92347 -26.27276 -25.02793 -24.64074 -23.13568 -22.42044 -21.59407 -20.65087 -19.62151 -19.46304 -18.78179 -18.08201 -17.49647 -17.36820 -17.25101 -16.71513 -16.60630 -16.49509 -15.80055 -15.64765 -15.53015 -15.19085 -14.98176 -14.75284 -14.55166 -14.30022 -14.23295 -14.03929 -13.81537 -13.49850 -13.23929 -13.19632 -13.01888 -12.50772 -12.40888 -12.29199 -12.23188 -11.82556 -11.62972 -11.40621 -11.15591 -10.98415 -10.74170 -10.52156 -10.45420 -9.95117 -9.70834 -8.93072 -8.75123 -6.42308 -0.48260 0.16608 0.21390 0.82204 0.93791 1.30087 1.45139 1.48566 1.55039 1.72330 2.18035 2.44124 2.49097 2.75359 3.02533 3.19772 3.24398 3.41031 3.75602 3.92442 4.01940 4.06403 4.18798 4.30039 4.32062 4.45378 4.48937 4.55688 4.67369 4.72533 4.74263 4.78585 4.98650 5.02857 5.08016 5.18349 5.29293 5.41561 5.48155 5.51886 5.72670 5.87583 5.93736 6.00428 6.15568 6.36939 6.49917 6.64955 6.81510 6.90009 7.34483 8.59764 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.030479 B = 0.001999 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.448869 B =14003.904621 C =14453.507945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.231 3.769 3 H 0.046 0.954 4 C -0.611 4.611 5 H 0.028 0.972 6 C -0.009 4.009 7 N -0.927 5.927 8 Si 1.074 2.926 9 H -0.284 1.284 10 H -0.233 1.233 11 H -0.274 1.274 12 N -0.560 5.560 13 C 0.094 3.906 14 C 0.496 3.504 15 O -0.557 6.557 16 C 0.518 3.482 17 O -0.512 6.512 18 N -0.601 5.601 19 C -0.006 4.006 20 C 0.066 3.934 21 N -0.288 5.288 22 N -0.325 5.325 23 C 0.339 3.661 24 C -0.179 4.179 25 C -0.048 4.048 26 C -0.173 4.173 27 C 0.124 3.876 28 N -0.529 5.529 29 C 0.060 3.940 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.254 0.746 34 H 0.043 0.957 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.432 0.568 38 H 0.214 0.786 39 H 0.142 0.858 40 H 0.176 0.824 41 H 0.181 0.819 42 H 0.197 0.803 43 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.423 1.364 31.810 33.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.129 3.871 3 H 0.064 0.936 4 C -0.649 4.649 5 H 0.047 0.953 6 C -0.210 4.210 7 N -0.562 5.562 8 Si 0.895 3.105 9 H -0.210 1.210 10 H -0.157 1.157 11 H -0.200 1.200 12 N -0.290 5.290 13 C -0.049 4.049 14 C 0.278 3.722 15 O -0.437 6.437 16 C 0.300 3.700 17 O -0.388 6.388 18 N -0.248 5.248 19 C -0.110 4.110 20 C -0.123 4.123 21 N -0.107 5.107 22 N -0.104 5.104 23 C 0.114 3.886 24 C -0.201 4.201 25 C -0.074 4.074 26 C -0.193 4.193 27 C -0.034 4.034 28 N -0.243 5.243 29 C -0.084 4.084 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.116 0.884 36 H 0.091 0.909 37 H 0.272 0.728 38 H 0.230 0.770 39 H 0.160 0.840 40 H 0.193 0.807 41 H 0.198 0.802 42 H 0.214 0.786 43 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 9.136 2.064 30.963 32.348 hybrid contribution 0.628 -1.350 0.079 1.491 sum 9.764 0.714 31.041 32.549 Atomic orbital electron populations 1.22389 0.95638 1.02094 1.01222 1.19213 0.92716 0.93670 0.81510 0.93632 1.22269 1.40621 1.09382 0.92632 0.95344 1.26996 0.94118 1.08250 0.91589 1.70992 1.43547 1.09286 1.32377 0.83724 0.79175 0.70849 0.76756 1.21011 1.15709 1.20005 1.47971 1.46213 1.13724 1.21059 1.21953 1.00587 0.79531 1.02788 1.20039 0.80948 0.87066 0.84187 1.90691 1.61545 1.15406 1.76052 1.19968 0.79746 0.87223 0.83046 1.90594 1.57999 1.14072 1.76130 1.42261 1.50678 1.12159 1.19724 1.17777 1.07671 0.92385 0.93142 1.24838 0.97584 0.95508 0.94339 1.77430 1.17045 1.03884 1.12353 1.45448 1.41703 1.05334 1.17897 1.17932 0.93727 0.91637 0.85288 1.21782 1.02522 0.98738 0.97074 1.21972 0.92058 0.99816 0.93536 1.22637 1.01554 0.92424 1.02640 1.23219 0.91106 1.01883 0.87151 1.66855 1.14759 1.23052 1.19596 1.22436 0.99213 0.96618 0.90155 0.92578 0.92590 0.91567 0.93626 0.93807 0.88407 0.90946 0.72833 0.76997 0.84046 0.80707 0.80186 0.78639 0.77275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.29 8.74 71.98 0.63 -5.66 16 2 C 0.23 10.88 2.21 44.25 0.10 10.97 16 3 H 0.05 2.27 5.56 -2.39 -0.01 2.26 16 4 C -0.61 -33.94 8.67 25.60 0.22 -33.72 16 5 H 0.03 1.74 7.80 -2.91 -0.02 1.71 16 6 C -0.01 -0.54 5.34 84.66 0.45 -0.09 16 7 N -0.93 -56.74 13.70 21.45 0.29 -56.45 16 8 Si 1.07 49.15 26.45 68.60 1.81 50.97 16 9 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 10 H -0.23 -9.19 5.51 99.48 0.55 -8.65 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 12 N -0.56 -23.45 2.75 -828.52 -2.28 -25.73 16 13 C 0.09 3.41 8.36 127.77 1.07 4.48 16 14 C 0.50 19.42 7.72 87.23 0.67 20.09 16 15 O -0.56 -23.63 15.83 -3.29 -0.05 -23.68 16 16 C 0.52 16.87 7.67 87.23 0.67 17.54 16 17 O -0.51 -17.08 10.53 -3.41 -0.04 -17.11 16 18 N -0.60 -15.96 5.45 -305.40 -1.66 -17.62 16 19 C -0.01 -0.15 6.90 37.74 0.26 0.11 16 20 C 0.07 1.82 10.84 85.38 0.93 2.74 16 21 N -0.29 -7.76 11.82 -56.66 -0.67 -8.43 16 22 N -0.32 -7.96 3.81 -191.63 -0.73 -8.69 16 23 C 0.34 7.10 7.55 132.78 1.00 8.10 16 24 C -0.18 -2.91 9.70 22.48 0.22 -2.70 16 25 C -0.05 -0.41 10.17 22.44 0.23 -0.18 16 26 C -0.17 -1.01 10.11 22.38 0.23 -0.78 16 27 C 0.12 1.22 11.18 84.66 0.95 2.16 16 28 N -0.53 -9.47 9.86 -192.81 -1.90 -11.37 16 29 C 0.06 1.36 11.13 83.47 0.93 2.29 16 30 H 0.06 2.22 6.90 -2.38 -0.02 2.20 16 31 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.07 2.68 4.85 -2.39 -0.01 2.67 16 33 H 0.25 15.81 8.73 -92.71 -0.81 15.01 16 34 H 0.04 1.70 8.09 -2.39 -0.02 1.68 16 35 H 0.10 3.11 6.00 -2.39 -0.01 3.10 16 36 H 0.07 2.58 6.55 -2.39 -0.02 2.56 16 37 H 0.43 9.91 8.31 -92.70 -0.77 9.14 16 38 H 0.21 5.92 5.91 -2.91 -0.02 5.90 16 39 H 0.14 2.42 7.69 -2.91 -0.02 2.40 16 40 H 0.18 0.32 8.06 -2.91 -0.02 0.30 16 41 H 0.18 -0.32 8.06 -2.91 -0.02 -0.34 16 42 H 0.20 0.56 8.06 -2.91 -0.02 0.54 16 43 H 0.21 3.58 8.05 -2.91 -0.02 3.55 16 Total: -1.00 -74.14 362.94 3.44 -70.71 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 0.12 Total: 22.04 kcal Atomic # 6 Polarization: 16.83 SS G_CDS: 8.55 Total: 25.37 kcal Atomic # 7 Polarization: -121.34 SS G_CDS: -6.95 Total: -128.29 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: -0.09 Total: -40.79 kcal Atomic # 14 Polarization: 49.15 SS G_CDS: 1.81 Total: 50.97 kcal Total: -74.14 3.44 -70.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525885833.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.144 kcal (2) G-P(sol) polarization free energy of solvation -74.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds