Wall clock time and date at job start Wed Apr 1 2020 01:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47505 * 2 1 4 4 C 1.50704 * 109.47153 * 120.00289 * 2 1 3 5 5 H 1.07998 * 119.99690 * 119.99571 * 4 2 1 6 6 C 1.37870 * 120.00024 * 300.00190 * 4 2 1 7 7 N 1.31515 * 120.00024 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00225 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47416 * 179.97438 * 8 6 4 10 10 H 1.48499 * 109.46775 * 299.99704 * 8 6 4 11 11 H 1.48496 * 109.47310 * 59.99527 * 8 6 4 12 12 N 1.46506 * 109.46926 * 240.00010 * 2 1 3 13 13 C 1.46497 * 120.00099 * 299.99968 * 12 2 1 14 14 C 1.34777 * 119.99770 * 120.00446 * 12 2 1 15 15 O 1.21366 * 120.00026 * 356.42197 * 14 12 2 16 16 C 1.49327 * 120.00058 * 176.42677 * 14 12 2 17 17 O 1.21410 * 119.99742 * 5.91672 * 16 14 12 18 18 N 1.34774 * 120.00299 * 185.91783 * 16 14 12 19 19 C 1.40431 * 120.00058 * 180.02562 * 18 16 14 20 20 C 1.40437 * 126.09399 * 359.68707 * 19 18 16 21 21 N 1.30796 * 108.37672 * 179.88180 * 20 19 18 22 22 N 1.40062 * 108.41487 * 0.38111 * 21 20 19 23 23 C 1.39781 * 126.06236 * 179.73761 * 22 21 20 24 24 C 1.38955 * 119.68458 * 359.75054 * 23 22 21 25 25 C 1.38417 * 119.10400 * 179.73212 * 24 23 22 26 26 C 1.38808 * 118.48022 * 0.53388 * 25 24 23 27 27 C 1.38118 * 119.29821 * 359.73157 * 26 25 24 28 28 N 1.31897 * 120.84019 * 359.97438 * 27 26 25 29 29 C 1.35814 * 126.09198 * 180.02562 * 19 18 16 30 30 H 1.08995 * 109.47009 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46717 * 299.99872 * 1 2 3 32 32 H 1.09004 * 109.46738 * 59.99683 * 1 2 3 33 33 H 0.97002 * 120.00535 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.46893 * 95.98237 * 13 12 2 35 35 H 1.08995 * 109.47538 * 215.98317 * 13 12 2 36 36 H 1.09001 * 109.47220 * 335.98930 * 13 12 2 37 37 H 0.97003 * 119.99799 * 359.97438 * 18 16 14 38 38 H 1.08007 * 125.81534 * 359.97438 * 20 19 18 39 39 H 1.07995 * 120.44856 * 0.02562 * 24 23 22 40 40 H 1.07992 * 120.75977 * 180.28380 * 25 24 23 41 41 H 1.08007 * 120.34881 * 179.70611 * 26 25 24 42 42 H 1.07997 * 119.57468 * 179.97438 * 27 26 25 43 43 H 1.08006 * 126.24377 * 359.97438 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8300 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 1.8279 -0.4195 5.2204 10 1 1.8280 -2.5200 4.0080 11 1 3.8075 -1.1192 4.0077 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 6 2.7932 -0.0356 -2.0833 15 8 3.0330 1.1435 -1.9252 16 6 3.3566 -0.7607 -3.2609 17 8 3.0312 -1.9099 -3.4788 18 7 4.2264 -0.1395 -4.0819 19 6 4.7558 -0.8213 -5.1896 20 6 4.4738 -2.1470 -5.5573 21 7 5.1499 -2.4269 -6.6415 22 7 5.8947 -1.2970 -7.0025 23 6 6.7518 -1.1933 -8.1018 24 6 6.9225 -2.2833 -8.9465 25 6 7.7698 -2.1656 -10.0348 26 6 8.4277 -0.9597 -10.2339 27 6 8.2148 0.0804 -9.3504 28 7 7.3967 -0.0598 -8.3254 29 6 5.6368 -0.3181 -6.0925 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 0.7095 1.1616 3.4844 34 1 0.7982 -2.1450 -2.0878 35 1 2.5056 -2.6084 -1.8917 36 1 1.4258 -2.5697 -0.4772 37 1 4.4862 0.7788 -3.9080 38 1 3.8103 -2.8203 -5.0348 39 1 6.3976 -3.2084 -8.7593 40 1 7.9186 -2.9942 -10.7111 41 1 9.0994 -0.8362 -11.0707 42 1 8.7248 1.0204 -9.5009 43 1 6.0562 0.6772 -6.0891 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000525885834.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:59 Heat of formation + Delta-G solvation = 82.239701 kcal Electronic energy + Delta-G solvation = -28471.079696 eV Core-core repulsion = 24326.881711 eV Total energy + Delta-G solvation = -4144.197985 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.97409 -40.59938 -39.99456 -38.07475 -35.93961 -34.85350 -33.63334 -32.85374 -32.75085 -30.43360 -29.59387 -29.08074 -26.28220 -25.31593 -24.96149 -24.28523 -23.75624 -21.97719 -21.31157 -20.43896 -19.23811 -18.51867 -17.30986 -16.91114 -16.80279 -16.38204 -16.14329 -16.00739 -15.66890 -15.39916 -15.25194 -14.76636 -14.41788 -14.37587 -14.13021 -13.67242 -13.54732 -13.26401 -13.07675 -12.53008 -12.51850 -12.37056 -11.79286 -11.64059 -11.34586 -11.24748 -11.11550 -10.88744 -10.78384 -10.62581 -10.52820 -10.32709 -10.31096 -10.21349 -10.12947 -9.25563 -9.14648 -8.83649 -8.47629 -7.96395 -7.72513 -6.12918 -4.21546 0.25876 0.71457 1.52801 1.73520 1.88068 2.64790 2.68869 3.26807 3.31655 3.33981 3.35587 3.71335 3.85682 4.05594 4.13113 4.35904 4.40662 4.54640 4.59788 4.75724 4.80408 4.88035 5.16067 5.18721 5.25132 5.30894 5.52337 5.68532 5.82548 6.00824 6.10859 6.22321 6.47780 6.62530 6.69050 6.74701 6.76828 6.95653 7.00800 7.11597 7.27027 7.38669 7.54325 7.64135 7.84832 7.98030 8.07911 8.33267 8.57901 8.83765 9.44650 10.92433 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.027847 B = 0.001935 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.256342 B =14469.366873 C =14553.670764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.254 3.746 3 H 0.067 0.933 4 C -0.530 4.530 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.902 3.098 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.550 5.550 13 C 0.068 3.932 14 C 0.496 3.504 15 O -0.537 6.537 16 C 0.513 3.487 17 O -0.509 6.509 18 N -0.620 5.620 19 C 0.017 3.983 20 C 0.079 3.921 21 N -0.276 5.276 22 N -0.325 5.325 23 C 0.382 3.618 24 C -0.168 4.168 25 C -0.050 4.050 26 C -0.193 4.193 27 C 0.135 3.865 28 N -0.509 5.509 29 C 0.042 3.958 30 H 0.033 0.967 31 H 0.096 0.904 32 H 0.013 0.987 33 H 0.265 0.735 34 H 0.047 0.953 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.424 0.576 38 H 0.220 0.780 39 H 0.149 0.851 40 H 0.144 0.856 41 H 0.141 0.859 42 H 0.167 0.833 43 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.106 -4.295 -24.133 27.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.155 3.845 3 H 0.085 0.915 4 C -0.568 4.568 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.729 3.271 9 H -0.211 1.211 10 H -0.201 1.201 11 H -0.202 1.202 12 N -0.280 5.280 13 C -0.075 4.075 14 C 0.277 3.723 15 O -0.416 6.416 16 C 0.297 3.703 17 O -0.384 6.384 18 N -0.267 5.267 19 C -0.087 4.087 20 C -0.111 4.111 21 N -0.094 5.094 22 N -0.105 5.105 23 C 0.155 3.845 24 C -0.190 4.190 25 C -0.077 4.077 26 C -0.214 4.214 27 C -0.023 4.023 28 N -0.223 5.223 29 C -0.102 4.102 30 H 0.052 0.948 31 H 0.115 0.885 32 H 0.032 0.968 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.262 0.738 38 H 0.236 0.764 39 H 0.167 0.833 40 H 0.161 0.839 41 H 0.159 0.841 42 H 0.184 0.816 43 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 12.002 -4.534 -24.280 27.461 hybrid contribution 0.353 -0.015 1.031 1.090 sum 12.355 -4.549 -23.250 26.719 Atomic orbital electron populations 1.22087 0.97522 0.99821 1.01051 1.19183 0.91414 0.94587 0.79298 0.91550 1.21240 1.32310 1.13264 0.89988 0.91997 1.24885 0.94829 0.94966 0.98998 1.69864 1.36043 1.22436 1.24061 0.86498 0.79246 0.79605 0.81724 1.21137 1.20118 1.20192 1.48266 1.45175 1.12703 1.21825 1.22192 1.01447 0.81842 1.01996 1.19481 0.81959 0.87168 0.83737 1.90728 1.60445 1.15057 1.75377 1.20881 0.78868 0.86581 0.84013 1.90520 1.58856 1.17185 1.71802 1.42578 1.43349 1.17203 1.23557 1.17784 1.03183 0.94144 0.93562 1.24910 0.98244 0.95122 0.92850 1.77479 1.09868 1.05663 1.16404 1.45203 1.34739 1.10460 1.20069 1.17635 0.89927 0.90861 0.86114 1.21640 1.01928 0.99740 0.95740 1.21538 0.92877 0.97846 0.95402 1.22159 1.02719 0.94431 1.02067 1.22540 0.92506 0.99117 0.88134 1.66881 1.09643 1.23586 1.22185 1.22088 1.00502 0.96379 0.91185 0.94807 0.88534 0.96789 0.92491 0.93404 0.89184 0.90456 0.73775 0.76445 0.83294 0.83852 0.84073 0.81632 0.79502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 8.97 37.16 0.33 -3.11 16 2 C 0.25 6.37 2.63 -69.08 -0.18 6.19 16 3 H 0.07 1.88 6.90 -51.93 -0.36 1.52 16 4 C -0.53 -14.01 7.95 -34.44 -0.27 -14.29 16 5 H 0.06 1.62 7.44 -52.49 -0.39 1.23 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.47 11.32 55.43 0.63 -23.84 16 8 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 9 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 N -0.55 -11.81 2.75 -175.81 -0.48 -12.30 16 13 C 0.07 1.25 8.48 59.85 0.51 1.75 16 14 C 0.50 10.08 7.73 -11.64 -0.09 9.99 16 15 O -0.54 -12.07 15.82 5.48 0.09 -11.98 16 16 C 0.51 8.55 7.74 -11.64 -0.09 8.46 16 17 O -0.51 -8.44 10.29 5.44 0.06 -8.38 16 18 N -0.62 -8.64 5.45 -10.48 -0.06 -8.70 16 19 C 0.02 0.23 6.90 -83.96 -0.58 -0.35 16 20 C 0.08 1.07 10.83 -17.17 -0.19 0.89 16 21 N -0.28 -3.70 11.82 30.74 0.36 -3.33 16 22 N -0.33 -4.10 3.81 -11.92 -0.05 -4.15 16 23 C 0.38 4.24 7.55 -154.40 -1.17 3.07 16 24 C -0.17 -1.49 9.70 -39.25 -0.38 -1.87 16 25 C -0.05 -0.30 10.17 -39.30 -0.40 -0.70 16 26 C -0.19 -0.99 10.11 -39.41 -0.40 -1.39 16 27 C 0.13 0.90 11.18 -17.57 -0.20 0.71 16 28 N -0.51 -5.13 9.86 -12.30 -0.12 -5.25 16 29 C 0.04 0.50 11.13 -16.52 -0.18 0.32 16 30 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 31 H 0.10 2.48 6.07 -51.93 -0.32 2.16 16 32 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.56 5.36 -51.94 -0.28 1.28 16 36 H 0.08 1.46 7.12 -51.93 -0.37 1.09 16 37 H 0.42 5.30 8.31 -40.82 -0.34 4.96 16 38 H 0.22 2.93 5.91 -52.48 -0.31 2.62 16 39 H 0.15 1.29 7.69 -52.49 -0.40 0.89 16 40 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 41 H 0.14 0.31 8.06 -52.48 -0.42 -0.11 16 42 H 0.17 0.60 8.06 -52.49 -0.42 0.18 16 43 H 0.19 1.81 8.05 -52.48 -0.42 1.39 16 LS Contribution 367.63 15.07 5.54 5.54 Total: -1.00 -31.54 367.63 -7.27 -38.81 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -4.83 Total: 6.55 kcal Atomic # 6 Polarization: 14.71 SS G_CDS: -3.38 Total: 11.33 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: 0.28 Total: -57.57 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: 0.14 Total: -20.36 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.54 -7.27 -38.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525885834.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.050 kcal (2) G-P(sol) polarization free energy of solvation -31.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds