Wall clock time and date at job start Wed Apr 1 2020 01:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46812 * 2 1 4 4 C 1.50695 * 109.47063 * 239.99851 * 2 1 3 5 5 H 1.07998 * 120.00418 * 245.62304 * 4 2 1 6 6 C 1.37879 * 120.00201 * 65.62961 * 4 2 1 7 7 N 1.31514 * 120.00393 * 197.18198 * 6 4 2 8 8 Si 1.86804 * 119.99786 * 17.45333 * 6 4 2 9 9 H 1.48502 * 109.47029 * 179.72709 * 8 6 4 10 10 H 1.48503 * 109.46948 * 299.72609 * 8 6 4 11 11 H 1.48492 * 109.47033 * 59.72641 * 8 6 4 12 12 N 1.46502 * 109.47016 * 119.99690 * 2 1 3 13 13 C 1.34775 * 120.00053 * 275.00255 * 12 2 1 14 14 O 1.21359 * 120.00098 * 0.02562 * 13 12 2 15 15 C 1.49348 * 119.99701 * 180.02562 * 13 12 2 16 16 O 1.21375 * 120.00199 * 359.97438 * 15 13 12 17 17 N 1.34775 * 119.99701 * 180.02562 * 15 13 12 18 18 C 1.39663 * 120.00175 * 179.97438 * 17 15 13 19 19 N 1.33669 * 125.60555 * 0.02792 * 18 17 15 20 20 C 1.30833 * 109.77912 * 179.97438 * 19 18 17 21 21 N 1.34402 * 108.21598 * 359.97438 * 20 19 18 22 22 C 1.46500 * 126.76431 * 179.97438 * 21 20 19 23 23 C 1.50698 * 109.47191 * 124.99801 * 22 21 20 24 24 C 1.38237 * 119.99956 * 269.72661 * 23 22 21 25 25 C 1.38235 * 119.99655 * 179.76592 * 24 23 22 26 26 C 1.38236 * 120.00427 * 0.50569 * 25 24 23 27 27 C 1.38243 * 119.99426 * 359.74809 * 26 25 24 28 28 C 1.38233 * 120.00197 * 359.97438 * 27 26 25 29 29 N 1.31219 * 125.60931 * 179.71366 * 18 17 15 30 30 H 1.08994 * 109.46957 * 306.33629 * 1 2 3 31 31 H 1.09002 * 109.47065 * 66.34399 * 1 2 3 32 32 H 1.09000 * 109.46665 * 186.33884 * 1 2 3 33 33 H 0.97001 * 119.99221 * 355.17115 * 7 6 4 34 34 H 0.96996 * 119.99659 * 94.99859 * 12 2 1 35 35 H 0.97002 * 120.00551 * 0.02562 * 17 15 13 36 36 H 1.08005 * 125.89048 * 180.02562 * 20 19 18 37 37 H 1.08995 * 109.46843 * 245.00032 * 22 21 20 38 38 H 1.09005 * 109.46965 * 5.00110 * 22 21 20 39 39 H 1.07995 * 119.99951 * 359.97438 * 24 23 22 40 40 H 1.08005 * 120.00145 * 180.22964 * 25 24 23 41 41 H 1.08000 * 120.00394 * 179.72166 * 26 25 24 42 42 H 1.07999 * 119.99406 * 179.97438 * 27 26 25 43 43 H 1.07996 * 120.00024 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5763 -1.6384 -1.1340 6 6 1.7977 -0.1756 -2.4794 7 7 1.9225 -0.9278 -3.5509 8 14 1.3097 1.6194 -2.6501 9 1 1.1227 1.9471 -4.0864 10 1 0.0398 1.8589 -1.9184 11 1 2.3784 2.4792 -2.0813 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8580 1.1592 2.4118 15 6 2.6454 -0.7221 3.5764 16 8 2.9341 -1.8997 3.5220 17 7 2.7736 -0.0498 4.7375 18 6 3.2391 -0.7081 5.8779 19 7 3.5888 -1.9965 5.9445 20 6 3.9792 -2.2871 7.1589 21 7 3.8872 -1.1746 7.9074 22 6 4.2218 -1.0430 9.3275 23 6 5.2210 0.0707 9.5071 24 6 6.5755 -0.2011 9.4564 25 6 7.4920 0.8213 9.6163 26 6 7.0542 2.1138 9.8374 27 6 5.6997 2.3846 9.8933 28 6 4.7832 1.3632 9.7277 29 7 3.4106 -0.1622 7.0587 30 1 -0.3633 0.6089 0.8278 31 1 -0.3633 0.4124 -0.9413 32 1 -0.3633 -1.0214 0.1135 33 1 2.2471 -1.8383 -3.4691 34 1 2.2490 -1.6317 1.1527 35 1 2.5418 0.8911 4.7814 36 1 4.3179 -3.2540 7.5008 37 1 3.3187 -0.8158 9.8940 38 1 4.6511 -1.9779 9.6878 39 1 6.9175 -1.2116 9.2885 40 1 8.5502 0.6096 9.5730 41 1 7.7703 2.9118 9.9668 42 1 5.3577 3.3943 10.0664 43 1 3.7251 1.5747 9.7718 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527386749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:11 Heat of formation + Delta-G solvation = 67.533276 kcal Electronic energy + Delta-G solvation = -28109.635376 eV Core-core repulsion = 23964.799673 eV Total energy + Delta-G solvation = -4144.835704 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.35418 -40.28339 -39.62729 -38.19372 -35.74581 -35.11584 -34.11488 -32.46348 -31.52627 -31.33210 -30.81810 -29.85557 -26.95029 -25.30173 -24.70888 -23.10166 -22.82371 -22.13722 -21.34660 -20.36537 -19.68011 -18.70413 -17.89112 -17.40738 -17.11571 -16.53105 -16.33242 -15.88887 -15.70602 -15.45143 -15.19161 -14.97474 -14.55231 -13.97824 -13.87139 -13.81607 -13.47852 -13.26333 -13.17257 -13.04939 -12.74148 -12.23942 -12.16936 -11.82694 -11.68985 -11.49562 -11.47079 -11.34766 -11.09393 -10.51860 -10.18347 -10.06907 -10.01767 -9.81919 -9.34905 -9.29981 -9.21358 -9.13097 -8.86105 -8.41821 -8.34780 -6.61404 -4.24948 0.71720 0.98104 1.23456 1.78453 1.80476 2.58322 2.88563 3.36477 3.39108 3.43172 3.57399 3.65090 3.73596 3.93053 4.17241 4.31958 4.39730 4.50956 4.54968 4.67740 4.79341 4.85517 4.94489 5.05791 5.14672 5.16899 5.32389 5.48079 5.58888 5.98396 5.99582 6.08465 6.10197 6.30161 6.33745 6.46155 6.49807 6.54074 6.57522 6.81616 6.84262 7.08586 7.24683 7.50095 7.76041 8.06265 8.19450 8.27267 8.48604 8.77692 9.44247 10.80043 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.019964 B = 0.002005 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.187493 B =13961.041558 C =14527.969472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.240 3.760 3 H 0.047 0.953 4 C -0.620 4.620 5 H 0.065 0.935 6 C 0.040 3.960 7 N -0.894 5.894 8 Si 1.042 2.958 9 H -0.282 1.282 10 H -0.271 1.271 11 H -0.279 1.279 12 N -0.660 5.660 13 C 0.502 3.498 14 O -0.535 6.535 15 C 0.509 3.491 16 O -0.458 6.458 17 N -0.610 5.610 18 C 0.451 3.549 19 N -0.519 5.519 20 C 0.268 3.732 21 N -0.376 5.376 22 C 0.176 3.824 23 C -0.114 4.114 24 C -0.100 4.100 25 C -0.125 4.125 26 C -0.109 4.109 27 C -0.123 4.123 28 C -0.082 4.082 29 N -0.328 5.328 30 H 0.032 0.968 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.270 0.730 34 H 0.408 0.592 35 H 0.434 0.566 36 H 0.223 0.777 37 H 0.097 0.903 38 H 0.112 0.888 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.521 1.137 31.813 32.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.137 3.863 3 H 0.064 0.936 4 C -0.658 4.658 5 H 0.083 0.917 6 C -0.167 4.167 7 N -0.527 5.527 8 Si 0.869 3.131 9 H -0.208 1.208 10 H -0.197 1.197 11 H -0.205 1.205 12 N -0.309 5.309 13 C 0.280 3.720 14 O -0.414 6.414 15 C 0.289 3.711 16 O -0.325 6.325 17 N -0.266 5.266 18 C 0.082 3.918 19 N -0.249 5.249 20 C -0.029 4.029 21 N -0.168 5.168 22 C 0.054 3.946 23 C -0.115 4.115 24 C -0.118 4.118 25 C -0.143 4.143 26 C -0.127 4.127 27 C -0.141 4.141 28 C -0.100 4.100 29 N -0.165 5.165 30 H 0.051 0.949 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.243 0.757 35 H 0.274 0.726 36 H 0.239 0.761 37 H 0.116 0.884 38 H 0.130 0.870 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.885 2.719 30.469 31.355 hybrid contribution 0.718 -1.397 1.390 2.097 sum 7.603 1.321 31.859 32.780 Atomic orbital electron populations 1.22524 0.98212 1.00588 1.00775 1.19247 0.91044 0.94335 0.81672 0.93563 1.22060 1.42143 1.10845 0.90771 0.91679 1.25709 0.94250 1.05181 0.91598 1.70871 1.40547 1.10020 1.31228 0.84082 0.77619 0.74969 0.76384 1.20788 1.19671 1.20511 1.46231 1.61314 1.14758 1.08584 1.19576 0.80926 0.87169 0.84327 1.90727 1.50837 1.15143 1.84689 1.20887 0.78904 0.87366 0.83971 1.90857 1.43384 1.14570 1.83644 1.42281 1.64226 1.14988 1.05117 1.20299 0.96302 0.88177 0.87053 1.70630 1.22046 1.13185 1.19002 1.26178 0.96589 0.94121 0.86018 1.50347 1.49705 1.06892 1.09875 1.20661 0.98411 0.99036 0.76478 1.19749 0.93833 0.94800 1.03082 1.21047 0.92362 0.99543 0.98887 1.21148 0.99703 0.93020 1.00386 1.21263 0.95963 0.96841 0.98652 1.21198 0.93240 0.99336 1.00322 1.21061 1.00005 0.91939 0.97035 1.78219 1.27260 1.10701 1.00277 0.94934 0.91441 0.93334 0.91949 0.75706 0.72648 0.76106 0.88446 0.87019 0.85990 0.85838 0.85902 0.85742 0.85702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.62 9.16 37.16 0.34 -3.28 16 2 C 0.24 5.75 2.14 -69.08 -0.15 5.60 16 3 H 0.05 1.17 6.23 -51.93 -0.32 0.85 16 4 C -0.62 -16.85 9.00 -34.44 -0.31 -17.16 16 5 H 0.07 1.87 7.96 -52.49 -0.42 1.45 16 6 C 0.04 1.11 5.29 -17.82 -0.09 1.02 16 7 N -0.89 -26.55 13.70 55.43 0.76 -25.79 16 8 Si 1.04 24.68 26.29 -169.99 -4.47 20.21 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.27 -5.94 5.76 56.52 0.33 -5.61 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.66 -14.08 5.06 -55.40 -0.28 -14.36 16 13 C 0.50 9.99 7.85 -11.63 -0.09 9.89 16 14 O -0.54 -11.35 16.14 5.49 0.09 -11.26 16 15 C 0.51 9.20 7.85 -11.63 -0.09 9.11 16 16 O -0.46 -9.11 15.15 5.48 0.08 -9.02 16 17 N -0.61 -9.57 5.42 -13.27 -0.07 -9.64 16 18 C 0.45 6.91 8.80 -321.04 -2.83 4.09 16 19 N -0.52 -7.80 9.37 -14.96 -0.14 -7.94 16 20 C 0.27 2.61 12.61 -90.68 -1.14 1.46 16 21 N -0.38 -3.55 3.68 -63.82 -0.23 -3.78 16 22 C 0.18 0.94 6.67 -5.19 -0.03 0.90 16 23 C -0.11 -0.80 5.34 -104.62 -0.56 -1.36 16 24 C -0.10 -0.67 9.70 -39.58 -0.38 -1.06 16 25 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 26 C -0.11 -0.76 10.05 -39.58 -0.40 -1.15 16 27 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 28 C -0.08 -0.62 9.70 -39.58 -0.38 -1.01 16 29 N -0.33 -4.34 12.58 30.01 0.38 -3.96 16 30 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 1.53 4.88 -51.93 -0.25 1.28 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.27 7.98 8.73 -40.82 -0.36 7.62 16 34 H 0.41 8.35 7.99 -40.82 -0.33 8.03 16 35 H 0.43 6.05 8.29 -40.82 -0.34 5.71 16 36 H 0.22 0.95 8.06 -52.48 -0.42 0.52 16 37 H 0.10 0.42 8.09 -51.93 -0.42 0.00 16 38 H 0.11 0.19 8.03 -51.93 -0.42 -0.22 16 39 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 40 H 0.12 0.63 8.06 -52.48 -0.42 0.20 16 41 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 42 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 43 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 376.45 15.07 5.67 5.67 Total: -1.00 -35.66 376.45 -10.24 -45.90 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -5.11 Total: 9.46 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: -6.92 Total: 4.51 kcal Atomic # 7 Polarization: -65.88 SS G_CDS: 0.41 Total: -65.47 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: 0.17 Total: -20.29 kcal Atomic # 14 Polarization: 24.68 SS G_CDS: -4.47 Total: 20.21 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.66 -10.24 -45.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527386749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.438 kcal (2) G-P(sol) polarization free energy of solvation -35.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds