Wall clock time and date at job start Wed Apr 1 2020 01:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46812 * 2 1 4 4 C 1.50695 * 109.47063 * 239.99851 * 2 1 3 5 5 H 1.07998 * 120.00418 * 245.62304 * 4 2 1 6 6 C 1.37879 * 120.00201 * 65.62961 * 4 2 1 7 7 N 1.31514 * 120.00393 * 197.18198 * 6 4 2 8 8 Si 1.86804 * 119.99786 * 17.45333 * 6 4 2 9 9 H 1.48502 * 109.47029 * 179.72709 * 8 6 4 10 10 H 1.48503 * 109.46948 * 299.72609 * 8 6 4 11 11 H 1.48492 * 109.47033 * 59.72641 * 8 6 4 12 12 N 1.46502 * 109.47016 * 119.99690 * 2 1 3 13 13 C 1.34775 * 120.00053 * 275.00255 * 12 2 1 14 14 O 1.21359 * 120.00098 * 0.02562 * 13 12 2 15 15 C 1.49348 * 119.99701 * 180.02562 * 13 12 2 16 16 O 1.21375 * 120.00199 * 359.97438 * 15 13 12 17 17 N 1.34775 * 119.99701 * 180.02562 * 15 13 12 18 18 C 1.39663 * 120.00175 * 179.97438 * 17 15 13 19 19 N 1.33669 * 125.60555 * 0.02792 * 18 17 15 20 20 C 1.30833 * 109.77912 * 179.97438 * 19 18 17 21 21 N 1.34402 * 108.21598 * 359.97438 * 20 19 18 22 22 C 1.46500 * 126.76431 * 179.97438 * 21 20 19 23 23 C 1.50698 * 109.47191 * 124.99801 * 22 21 20 24 24 C 1.38237 * 119.99956 * 269.72661 * 23 22 21 25 25 C 1.38235 * 119.99655 * 179.76592 * 24 23 22 26 26 C 1.38236 * 120.00427 * 0.50569 * 25 24 23 27 27 C 1.38243 * 119.99426 * 359.74809 * 26 25 24 28 28 C 1.38233 * 120.00197 * 359.97438 * 27 26 25 29 29 N 1.31219 * 125.60931 * 179.71366 * 18 17 15 30 30 H 1.08994 * 109.46957 * 306.33629 * 1 2 3 31 31 H 1.09002 * 109.47065 * 66.34399 * 1 2 3 32 32 H 1.09000 * 109.46665 * 186.33884 * 1 2 3 33 33 H 0.97001 * 119.99221 * 355.17115 * 7 6 4 34 34 H 0.96996 * 119.99659 * 94.99859 * 12 2 1 35 35 H 0.97002 * 120.00551 * 0.02562 * 17 15 13 36 36 H 1.08005 * 125.89048 * 180.02562 * 20 19 18 37 37 H 1.08995 * 109.46843 * 245.00032 * 22 21 20 38 38 H 1.09005 * 109.46965 * 5.00110 * 22 21 20 39 39 H 1.07995 * 119.99951 * 359.97438 * 24 23 22 40 40 H 1.08005 * 120.00145 * 180.22964 * 25 24 23 41 41 H 1.08000 * 120.00394 * 179.72166 * 26 25 24 42 42 H 1.07999 * 119.99406 * 179.97438 * 27 26 25 43 43 H 1.07996 * 120.00024 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5763 -1.6384 -1.1340 6 6 1.7977 -0.1756 -2.4794 7 7 1.9225 -0.9278 -3.5509 8 14 1.3097 1.6194 -2.6501 9 1 1.1227 1.9471 -4.0864 10 1 0.0398 1.8589 -1.9184 11 1 2.3784 2.4792 -2.0813 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8580 1.1592 2.4118 15 6 2.6454 -0.7221 3.5764 16 8 2.9341 -1.8997 3.5220 17 7 2.7736 -0.0498 4.7375 18 6 3.2391 -0.7081 5.8779 19 7 3.5888 -1.9965 5.9445 20 6 3.9792 -2.2871 7.1589 21 7 3.8872 -1.1746 7.9074 22 6 4.2218 -1.0430 9.3275 23 6 5.2210 0.0707 9.5071 24 6 6.5755 -0.2011 9.4564 25 6 7.4920 0.8213 9.6163 26 6 7.0542 2.1138 9.8374 27 6 5.6997 2.3846 9.8933 28 6 4.7832 1.3632 9.7277 29 7 3.4106 -0.1622 7.0587 30 1 -0.3633 0.6089 0.8278 31 1 -0.3633 0.4124 -0.9413 32 1 -0.3633 -1.0214 0.1135 33 1 2.2471 -1.8383 -3.4691 34 1 2.2490 -1.6317 1.1527 35 1 2.5418 0.8911 4.7814 36 1 4.3179 -3.2540 7.5008 37 1 3.3187 -0.8158 9.8940 38 1 4.6511 -1.9779 9.6878 39 1 6.9175 -1.2116 9.2885 40 1 8.5502 0.6096 9.5730 41 1 7.7703 2.9118 9.9668 42 1 5.3577 3.3943 10.0664 43 1 3.7251 1.5747 9.7718 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527386749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:10 Heat of formation + Delta-G solvation = 45.222205 kcal Electronic energy + Delta-G solvation = -28110.602857 eV Core-core repulsion = 23964.799673 eV Total energy + Delta-G solvation = -4145.803184 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.26390 -41.74296 -40.15919 -39.71468 -37.24327 -36.45846 -35.04360 -34.46325 -32.34939 -31.83031 -31.75235 -31.56658 -27.71221 -26.96814 -26.34268 -23.77093 -23.50800 -23.33606 -22.12433 -21.79578 -21.25732 -20.29151 -19.22817 -18.68223 -17.96635 -17.68372 -17.43888 -16.93769 -16.80824 -16.60664 -16.03273 -15.89755 -15.75028 -15.36353 -15.10875 -15.01861 -14.67641 -14.34057 -14.29564 -14.18926 -13.80550 -13.60654 -13.54702 -13.39097 -12.99993 -12.82181 -12.41544 -12.36411 -11.98511 -11.96625 -11.91627 -11.65203 -11.22569 -11.16230 -10.91805 -10.70894 -10.48358 -10.19447 -9.89712 -9.84305 -9.79192 -8.83251 -6.47484 -0.00556 0.18675 0.47299 0.70865 0.76452 1.48565 1.54683 1.64066 1.73848 1.76481 2.24197 2.41787 2.44392 2.88160 3.00355 3.23787 3.38458 3.64581 3.77671 3.96987 4.09818 4.24682 4.26386 4.35959 4.42920 4.44495 4.59125 4.68307 4.70004 4.70512 4.99926 5.00914 5.09611 5.13640 5.21883 5.31976 5.43498 5.50199 5.50513 5.55959 5.58845 5.63262 5.92409 5.97235 6.05699 6.30689 6.46266 6.60837 6.89774 7.10342 7.29573 8.57336 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.019964 B = 0.002005 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.187493 B =13961.041558 C =14527.969472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.242 3.758 3 H 0.040 0.960 4 C -0.620 4.620 5 H 0.037 0.963 6 C -0.005 4.005 7 N -0.923 5.923 8 Si 1.075 2.925 9 H -0.283 1.283 10 H -0.240 1.240 11 H -0.269 1.269 12 N -0.666 5.666 13 C 0.508 3.492 14 O -0.546 6.546 15 C 0.520 3.480 16 O -0.480 6.480 17 N -0.600 5.600 18 C 0.424 3.576 19 N -0.570 5.570 20 C 0.282 3.718 21 N -0.364 5.364 22 C 0.169 3.831 23 C -0.123 4.123 24 C -0.106 4.106 25 C -0.138 4.138 26 C -0.121 4.121 27 C -0.139 4.139 28 C -0.099 4.099 29 N -0.338 5.338 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.257 0.743 34 H 0.410 0.590 35 H 0.439 0.561 36 H 0.275 0.725 37 H 0.110 0.890 38 H 0.158 0.842 39 H 0.144 0.856 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.133 0.867 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.697 1.272 34.532 35.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.138 3.862 3 H 0.058 0.942 4 C -0.658 4.658 5 H 0.055 0.945 6 C -0.206 4.206 7 N -0.558 5.558 8 Si 0.896 3.104 9 H -0.208 1.208 10 H -0.164 1.164 11 H -0.194 1.194 12 N -0.316 5.316 13 C 0.287 3.713 14 O -0.425 6.425 15 C 0.299 3.701 16 O -0.348 6.348 17 N -0.256 5.256 18 C 0.055 3.945 19 N -0.301 5.301 20 C -0.014 4.014 21 N -0.156 5.156 22 C 0.050 3.950 23 C -0.124 4.124 24 C -0.125 4.125 25 C -0.156 4.156 26 C -0.139 4.139 27 C -0.156 4.156 28 C -0.118 4.118 29 N -0.175 5.175 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.246 0.754 35 H 0.280 0.720 36 H 0.291 0.709 37 H 0.128 0.872 38 H 0.176 0.824 39 H 0.162 0.838 40 H 0.156 0.844 41 H 0.154 0.846 42 H 0.151 0.849 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.071 2.860 33.283 34.146 hybrid contribution 0.788 -1.477 0.775 1.844 sum 7.859 1.384 34.058 34.980 Atomic orbital electron populations 1.22415 0.96553 1.01236 1.01293 1.19036 0.92204 0.93518 0.81401 0.94241 1.22207 1.41258 1.09849 0.92450 0.94467 1.26990 0.93946 1.08260 0.91434 1.70985 1.42808 1.09740 1.32236 0.83684 0.79129 0.70756 0.76821 1.20837 1.16425 1.19442 1.46068 1.62015 1.14883 1.08587 1.19781 0.80116 0.86890 0.84496 1.90712 1.51117 1.15653 1.85016 1.20284 0.78955 0.86875 0.83975 1.90848 1.44728 1.15232 1.83957 1.42011 1.63525 1.15109 1.04943 1.20363 0.98125 0.88824 0.87187 1.70551 1.24047 1.13397 1.22129 1.27080 0.94299 0.95525 0.84456 1.50603 1.48182 1.06019 1.10807 1.21159 0.98922 1.00799 0.74168 1.19953 0.94476 0.94990 1.03014 1.21371 0.92252 1.00607 0.98264 1.21467 1.00759 0.93124 1.00201 1.21534 0.96189 0.97613 0.98553 1.21430 0.93634 0.99942 1.00639 1.21250 1.00164 0.92685 0.97654 1.78129 1.26936 1.12455 0.99975 0.93253 0.91696 0.92982 0.93342 0.75425 0.71996 0.70948 0.87203 0.82423 0.83846 0.84365 0.84573 0.84898 0.85748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.74 9.16 71.98 0.66 -6.08 16 2 C 0.24 11.48 2.14 44.25 0.09 11.57 16 3 H 0.04 1.95 6.23 -2.39 -0.01 1.94 16 4 C -0.62 -34.10 9.00 25.60 0.23 -33.87 16 5 H 0.04 2.21 7.96 -2.91 -0.02 2.18 16 6 C -0.01 -0.31 5.29 84.66 0.45 0.14 16 7 N -0.92 -55.91 13.70 21.45 0.29 -55.62 16 8 Si 1.08 48.88 26.29 68.60 1.80 50.68 16 9 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 10 H -0.24 -9.70 5.76 99.48 0.57 -9.13 16 11 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 12 N -0.67 -28.37 5.06 -447.53 -2.27 -30.64 16 13 C 0.51 19.99 7.85 87.24 0.68 20.67 16 14 O -0.55 -22.63 16.14 -3.27 -0.05 -22.68 16 15 C 0.52 18.69 7.85 87.24 0.68 19.37 16 16 O -0.48 -19.07 15.15 -3.32 -0.05 -19.12 16 17 N -0.60 -18.62 5.42 -314.26 -1.70 -20.33 16 18 C 0.42 12.63 8.80 260.87 2.30 14.92 16 19 N -0.57 -16.28 9.37 -201.23 -1.89 -18.17 16 20 C 0.28 4.58 12.61 180.37 2.28 6.85 16 21 N -0.36 -5.82 3.68 -355.83 -1.31 -7.13 16 22 C 0.17 1.20 6.67 85.63 0.57 1.77 16 23 C -0.12 -1.46 5.34 -19.87 -0.11 -1.56 16 24 C -0.11 -1.17 9.70 22.27 0.22 -0.95 16 25 C -0.14 -1.65 10.05 22.27 0.22 -1.43 16 26 C -0.12 -1.55 10.05 22.27 0.22 -1.33 16 27 C -0.14 -1.92 10.05 22.27 0.22 -1.70 16 28 C -0.10 -1.40 9.70 22.27 0.22 -1.19 16 29 N -0.34 -8.44 12.58 -58.97 -0.74 -9.19 16 30 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.06 2.81 4.88 -2.39 -0.01 2.79 16 32 H 0.05 2.16 8.14 -2.39 -0.02 2.15 16 33 H 0.26 15.74 8.73 -92.71 -0.81 14.93 16 34 H 0.41 17.05 7.99 -92.71 -0.74 16.31 16 35 H 0.44 12.11 8.29 -92.71 -0.77 11.34 16 36 H 0.28 0.95 8.06 -2.91 -0.02 0.93 16 37 H 0.11 0.57 8.09 -2.39 -0.02 0.55 16 38 H 0.16 -0.30 8.03 -2.38 -0.02 -0.32 16 39 H 0.14 0.86 8.06 -2.91 -0.02 0.84 16 40 H 0.14 1.14 8.06 -2.91 -0.02 1.11 16 41 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 42 H 0.13 1.45 8.06 -2.91 -0.02 1.43 16 43 H 0.12 1.66 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -78.74 376.45 2.43 -76.31 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: -0.60 Total: 28.67 kcal Atomic # 6 Polarization: 18.26 SS G_CDS: 8.94 Total: 27.20 kcal Atomic # 7 Polarization: -133.45 SS G_CDS: -7.61 Total: -141.06 kcal Atomic # 8 Polarization: -41.69 SS G_CDS: -0.10 Total: -41.80 kcal Atomic # 14 Polarization: 48.88 SS G_CDS: 1.80 Total: 50.68 kcal Total: -78.74 2.43 -76.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527386749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.535 kcal (2) G-P(sol) polarization free energy of solvation -78.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds