Wall clock time and date at job start Wed Apr 1 2020 01:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21352 * 120.00066 * 0.02562 * 13 12 2 15 15 C 1.49350 * 119.99763 * 179.97438 * 13 12 2 16 16 O 1.21376 * 120.00225 * 0.02562 * 15 13 12 17 17 N 1.34777 * 119.99763 * 179.97438 * 15 13 12 18 18 C 1.39660 * 119.99809 * 179.97438 * 17 15 13 19 19 N 1.33665 * 125.61222 * 0.03501 * 18 17 15 20 20 C 1.30836 * 109.78466 * 179.97438 * 19 18 17 21 21 N 1.34398 * 108.21189 * 359.97438 * 20 19 18 22 22 C 1.46504 * 126.76426 * 180.02562 * 21 20 19 23 23 C 1.50697 * 109.47310 * 124.99611 * 22 21 20 24 24 C 1.38237 * 120.00192 * 269.72979 * 23 22 21 25 25 C 1.38229 * 120.00312 * 179.76784 * 24 23 22 26 26 C 1.38239 * 119.99951 * 0.50087 * 25 24 23 27 27 C 1.38238 * 119.99776 * 359.75257 * 26 25 24 28 28 C 1.38231 * 119.99974 * 89.99818 * 23 22 21 29 29 N 1.31224 * 125.60768 * 179.72048 * 18 17 15 30 30 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 32 32 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 33 33 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 34 34 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 35 35 H 0.96993 * 120.00477 * 0.02562 * 17 15 13 36 36 H 1.08001 * 125.89281 * 179.97438 * 20 19 18 37 37 H 1.09000 * 109.47120 * 244.99931 * 22 21 20 38 38 H 1.08999 * 109.47192 * 4.99600 * 22 21 20 39 39 H 1.08006 * 119.99686 * 359.97438 * 24 23 22 40 40 H 1.08001 * 120.00397 * 180.22617 * 25 24 23 41 41 H 1.07998 * 120.00389 * 179.72197 * 26 25 24 42 42 H 1.07996 * 120.00230 * 179.97438 * 27 26 25 43 43 H 1.07999 * 120.00081 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8588 1.1595 -2.4114 15 6 2.6454 -0.7219 -3.5765 16 8 2.9341 -1.8995 -3.5220 17 7 2.7736 -0.0495 -4.7375 18 6 3.2401 -0.7076 -5.8776 19 7 3.5897 -1.9959 -5.9443 20 6 3.9803 -2.2865 -7.1588 21 7 3.8874 -1.1742 -7.9073 22 6 4.2218 -1.0425 -9.3276 23 6 3.0341 -0.4923 -10.0744 24 6 2.0994 -1.3539 -10.6175 25 6 1.0075 -0.8492 -11.2984 26 6 0.8556 0.5170 -11.4452 27 6 1.7930 1.3784 -10.9067 28 6 2.8823 0.8737 -10.2212 29 7 3.4019 -0.1641 -7.0610 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 0.7089 1.1611 3.4845 34 1 2.2490 -1.6317 -1.1527 35 1 2.5425 0.8915 -4.7811 36 1 4.3190 -3.2534 -7.5007 37 1 5.0678 -0.3646 -9.4403 38 1 4.4836 -2.0205 -9.7314 39 1 2.2206 -2.4215 -10.5069 40 1 0.2753 -1.5222 -11.7196 41 1 0.0049 0.9113 -11.9811 42 1 1.6747 2.4457 -11.0217 43 1 3.6150 1.5468 -9.8010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527386750.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:13 Heat of formation + Delta-G solvation = 66.923156 kcal Electronic energy + Delta-G solvation = -28033.265634 eV Core-core repulsion = 23888.403473 eV Total energy + Delta-G solvation = -4144.862161 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.29915 -40.15707 -39.59187 -38.03031 -35.64490 -34.97350 -34.04836 -32.39155 -31.48043 -31.30402 -30.76489 -29.15090 -26.88743 -25.34205 -24.94016 -23.07173 -22.77791 -22.12468 -21.33811 -20.42583 -19.54264 -18.53529 -17.80431 -17.29577 -16.50541 -16.30250 -16.21018 -15.68621 -15.60151 -15.37192 -15.13931 -14.94384 -14.60888 -14.10448 -13.85870 -13.78985 -13.43209 -13.28068 -13.06413 -13.01465 -12.45913 -12.13007 -11.78468 -11.65067 -11.44152 -11.28536 -11.11285 -11.03856 -10.97237 -10.78536 -10.36186 -10.25434 -10.09396 -9.96605 -9.32242 -9.25611 -9.13574 -9.04534 -8.79335 -8.60172 -8.11681 -6.15174 -4.24643 0.74754 1.00729 1.30471 1.87186 1.88593 2.66621 2.96270 3.27630 3.32037 3.34451 3.42137 3.78682 3.83930 3.96790 4.20477 4.31259 4.41658 4.53989 4.57711 4.70208 4.82925 4.91920 5.07998 5.10339 5.17858 5.20117 5.39492 5.50764 5.61569 6.01501 6.03460 6.11185 6.13833 6.40138 6.54681 6.58354 6.74457 6.86906 6.92809 7.04450 7.22217 7.38552 7.63371 7.78266 7.91002 8.06899 8.13185 8.45340 8.62565 8.86716 9.42086 10.90827 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.024208 B = 0.001894 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.380620 B =14783.288120 C =15403.278267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.262 3.738 3 H 0.055 0.945 4 C -0.536 4.536 5 H 0.065 0.935 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.906 3.094 9 H -0.286 1.286 10 H -0.275 1.275 11 H -0.275 1.275 12 N -0.666 5.666 13 C 0.501 3.499 14 O -0.534 6.534 15 C 0.508 3.492 16 O -0.461 6.461 17 N -0.611 5.611 18 C 0.452 3.548 19 N -0.518 5.518 20 C 0.267 3.733 21 N -0.376 5.376 22 C 0.176 3.824 23 C -0.113 4.113 24 C -0.100 4.100 25 C -0.125 4.125 26 C -0.109 4.109 27 C -0.123 4.123 28 C -0.082 4.082 29 N -0.329 5.329 30 H 0.030 0.970 31 H 0.095 0.905 32 H 0.017 0.983 33 H 0.266 0.734 34 H 0.403 0.597 35 H 0.434 0.566 36 H 0.222 0.778 37 H 0.097 0.903 38 H 0.111 0.889 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.612 -3.813 -30.018 30.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.161 3.839 3 H 0.073 0.927 4 C -0.575 4.575 5 H 0.083 0.917 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.733 3.267 9 H -0.211 1.211 10 H -0.200 1.200 11 H -0.201 1.201 12 N -0.315 5.315 13 C 0.279 3.721 14 O -0.412 6.412 15 C 0.288 3.712 16 O -0.327 6.327 17 N -0.267 5.267 18 C 0.083 3.917 19 N -0.248 5.248 20 C -0.030 4.030 21 N -0.169 5.169 22 C 0.054 3.946 23 C -0.114 4.114 24 C -0.119 4.119 25 C -0.143 4.143 26 C -0.127 4.127 27 C -0.141 4.141 28 C -0.100 4.100 29 N -0.166 5.166 30 H 0.049 0.951 31 H 0.113 0.887 32 H 0.036 0.964 33 H 0.076 0.924 34 H 0.238 0.762 35 H 0.274 0.726 36 H 0.238 0.762 37 H 0.115 0.885 38 H 0.129 0.871 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.363 -3.218 -29.639 30.130 hybrid contribution 0.314 -0.590 0.528 0.852 sum 4.677 -3.808 -29.111 29.729 Atomic orbital electron populations 1.22105 0.97789 0.99611 1.01245 1.18992 0.91477 0.94164 0.79229 0.92712 1.21157 1.32830 1.13499 0.89992 0.91733 1.24882 0.94709 0.94947 0.99089 1.69886 1.35667 1.22341 1.24162 0.86439 0.79216 0.79605 0.81464 1.21122 1.20043 1.20093 1.46493 1.61289 1.14592 1.09146 1.19504 0.81166 0.87191 0.84257 1.90735 1.50763 1.15144 1.84577 1.21039 0.78725 0.87376 0.84036 1.90841 1.43566 1.14624 1.83718 1.42325 1.64180 1.15018 1.05147 1.20322 0.96199 0.88254 0.86969 1.70628 1.21994 1.13048 1.19167 1.26171 0.96604 0.94017 0.86199 1.50339 1.49832 1.07131 1.09575 1.20653 0.95781 1.03643 0.74506 1.19751 0.97263 0.94240 1.00159 1.21043 0.94064 0.99430 0.97319 1.21141 0.97874 0.95596 0.99671 1.21257 0.98842 0.93611 0.99038 1.21199 0.94593 1.00053 0.98238 1.21068 0.97883 0.94435 0.96639 1.78224 1.27229 1.11044 1.00058 0.95055 0.88697 0.96418 0.92407 0.76223 0.72649 0.76156 0.88465 0.87056 0.86007 0.85865 0.85925 0.85746 0.85686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.26 37.16 0.34 -3.32 16 2 C 0.26 6.65 2.56 -69.09 -0.18 6.48 16 3 H 0.06 1.56 7.58 -51.93 -0.39 1.16 16 4 C -0.54 -14.26 8.73 -34.44 -0.30 -14.56 16 5 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -24.56 11.32 55.43 0.63 -23.93 16 8 Si 0.91 20.71 29.54 -169.99 -5.02 15.69 16 9 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 N -0.67 -14.59 5.06 -55.40 -0.28 -14.87 16 13 C 0.50 10.39 7.85 -11.63 -0.09 10.30 16 14 O -0.53 -12.03 16.14 5.50 0.09 -11.94 16 15 C 0.51 9.45 7.85 -11.63 -0.09 9.36 16 16 O -0.46 -9.29 15.15 5.47 0.08 -9.20 16 17 N -0.61 -9.92 5.42 -13.27 -0.07 -9.99 16 18 C 0.45 7.10 8.80 -321.05 -2.83 4.28 16 19 N -0.52 -7.93 9.37 -14.96 -0.14 -8.07 16 20 C 0.27 2.66 12.61 -90.68 -1.14 1.52 16 21 N -0.38 -3.66 3.68 -63.82 -0.23 -3.89 16 22 C 0.18 0.98 6.67 -5.19 -0.03 0.95 16 23 C -0.11 -0.82 5.34 -104.63 -0.56 -1.38 16 24 C -0.10 -0.69 9.70 -39.59 -0.38 -1.07 16 25 C -0.12 -0.87 10.05 -39.58 -0.40 -1.26 16 26 C -0.11 -0.77 10.05 -39.58 -0.40 -1.17 16 27 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 28 C -0.08 -0.64 9.70 -39.58 -0.38 -1.02 16 29 N -0.33 -4.47 12.57 30.01 0.38 -4.09 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.40 8.26 8.01 -40.82 -0.33 7.93 16 35 H 0.43 6.35 8.29 -40.82 -0.34 6.01 16 36 H 0.22 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.10 0.44 8.09 -51.93 -0.42 0.02 16 38 H 0.11 0.22 8.03 -51.93 -0.42 -0.20 16 39 H 0.12 0.60 8.06 -52.48 -0.42 0.18 16 40 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 41 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 LS Contribution 380.83 15.07 5.74 5.74 Total: -1.00 -34.66 380.83 -10.90 -45.56 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -5.13 Total: 9.54 kcal Atomic # 6 Polarization: 16.41 SS G_CDS: -6.93 Total: 9.48 kcal Atomic # 7 Polarization: -65.13 SS G_CDS: 0.28 Total: -64.85 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: 0.17 Total: -21.15 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.66 -10.90 -45.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527386750.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.483 kcal (2) G-P(sol) polarization free energy of solvation -34.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds