Wall clock time and date at job start Wed Apr 1 2020 01:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21352 * 120.00066 * 0.02562 * 13 12 2 15 15 C 1.49350 * 119.99763 * 179.97438 * 13 12 2 16 16 O 1.21376 * 120.00225 * 0.02562 * 15 13 12 17 17 N 1.34777 * 119.99763 * 179.97438 * 15 13 12 18 18 C 1.39660 * 119.99809 * 179.97438 * 17 15 13 19 19 N 1.33665 * 125.61222 * 0.03501 * 18 17 15 20 20 C 1.30836 * 109.78466 * 179.97438 * 19 18 17 21 21 N 1.34398 * 108.21189 * 359.97438 * 20 19 18 22 22 C 1.46504 * 126.76426 * 180.02562 * 21 20 19 23 23 C 1.50697 * 109.47310 * 124.99611 * 22 21 20 24 24 C 1.38237 * 120.00192 * 269.72979 * 23 22 21 25 25 C 1.38229 * 120.00312 * 179.76784 * 24 23 22 26 26 C 1.38239 * 119.99951 * 0.50087 * 25 24 23 27 27 C 1.38238 * 119.99776 * 359.75257 * 26 25 24 28 28 C 1.38231 * 119.99974 * 89.99818 * 23 22 21 29 29 N 1.31224 * 125.60768 * 179.72048 * 18 17 15 30 30 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 32 32 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 33 33 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 34 34 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 35 35 H 0.96993 * 120.00477 * 0.02562 * 17 15 13 36 36 H 1.08001 * 125.89281 * 179.97438 * 20 19 18 37 37 H 1.09000 * 109.47120 * 244.99931 * 22 21 20 38 38 H 1.08999 * 109.47192 * 4.99600 * 22 21 20 39 39 H 1.08006 * 119.99686 * 359.97438 * 24 23 22 40 40 H 1.08001 * 120.00397 * 180.22617 * 25 24 23 41 41 H 1.07998 * 120.00389 * 179.72197 * 26 25 24 42 42 H 1.07996 * 120.00230 * 179.97438 * 27 26 25 43 43 H 1.07999 * 120.00081 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8588 1.1595 -2.4114 15 6 2.6454 -0.7219 -3.5765 16 8 2.9341 -1.8995 -3.5220 17 7 2.7736 -0.0495 -4.7375 18 6 3.2401 -0.7076 -5.8776 19 7 3.5897 -1.9959 -5.9443 20 6 3.9803 -2.2865 -7.1588 21 7 3.8874 -1.1742 -7.9073 22 6 4.2218 -1.0425 -9.3276 23 6 3.0341 -0.4923 -10.0744 24 6 2.0994 -1.3539 -10.6175 25 6 1.0075 -0.8492 -11.2984 26 6 0.8556 0.5170 -11.4452 27 6 1.7930 1.3784 -10.9067 28 6 2.8823 0.8737 -10.2212 29 7 3.4019 -0.1641 -7.0610 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 0.7089 1.1611 3.4845 34 1 2.2490 -1.6317 -1.1527 35 1 2.5425 0.8915 -4.7811 36 1 4.3190 -3.2534 -7.5007 37 1 5.0678 -0.3646 -9.4403 38 1 4.4836 -2.0205 -9.7314 39 1 2.2206 -2.4215 -10.5069 40 1 0.2753 -1.5222 -11.7196 41 1 0.0049 0.9113 -11.9811 42 1 1.6747 2.4457 -11.0217 43 1 3.6150 1.5468 -9.8010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527386750.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:13 Heat of formation + Delta-G solvation = 46.596190 kcal Electronic energy + Delta-G solvation = -28034.147077 eV Core-core repulsion = 23888.403473 eV Total energy + Delta-G solvation = -4145.743604 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.23845 -41.67133 -40.14126 -39.63249 -37.14479 -36.40821 -35.01643 -34.32117 -32.32629 -31.81692 -31.60706 -31.08132 -27.66375 -27.35750 -26.34409 -23.77167 -23.49327 -23.39888 -22.18163 -21.82845 -21.14808 -20.05880 -18.81163 -18.14149 -17.93066 -17.61202 -17.30704 -16.97569 -16.86747 -16.62943 -16.05913 -15.95892 -15.88038 -15.37553 -15.11245 -14.93752 -14.43988 -14.32574 -14.21185 -13.78804 -13.74378 -13.53733 -13.09738 -12.94785 -12.91070 -12.81734 -12.68066 -12.34342 -12.28632 -12.14141 -11.96515 -11.90347 -11.17764 -11.15214 -10.89558 -10.66983 -10.58924 -10.01422 -9.87174 -9.82868 -9.77637 -8.19145 -6.36406 0.04440 0.20367 0.48404 0.74638 0.80732 1.47054 1.48804 1.56527 1.68989 1.81135 2.28957 2.37668 2.53987 2.89411 3.11457 3.32003 3.43087 3.67082 3.79217 3.98558 4.10934 4.25709 4.28381 4.38089 4.45826 4.60266 4.70228 4.71182 4.89004 5.01607 5.02090 5.10925 5.15460 5.27908 5.29109 5.42528 5.51253 5.55006 5.59106 5.59902 5.65705 5.80334 5.95355 6.03459 6.06877 6.40624 6.63958 6.73234 7.03430 7.12582 7.35239 8.86843 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.024208 B = 0.001894 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.380620 B =14783.288120 C =15403.278267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.268 3.732 3 H 0.017 0.983 4 C -0.553 4.553 5 H 0.071 0.929 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.973 3.027 9 H -0.283 1.283 10 H -0.266 1.266 11 H -0.272 1.272 12 N -0.667 5.667 13 C 0.504 3.496 14 O -0.554 6.554 15 C 0.522 3.478 16 O -0.477 6.477 17 N -0.603 5.603 18 C 0.425 3.575 19 N -0.568 5.568 20 C 0.283 3.717 21 N -0.365 5.365 22 C 0.169 3.831 23 C -0.123 4.123 24 C -0.106 4.106 25 C -0.137 4.137 26 C -0.121 4.121 27 C -0.139 4.139 28 C -0.100 4.100 29 N -0.340 5.340 30 H 0.040 0.960 31 H 0.075 0.925 32 H 0.020 0.980 33 H 0.268 0.732 34 H 0.411 0.589 35 H 0.438 0.562 36 H 0.276 0.724 37 H 0.109 0.891 38 H 0.159 0.841 39 H 0.145 0.855 40 H 0.139 0.861 41 H 0.136 0.864 42 H 0.132 0.868 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.604 -5.992 -31.663 32.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.166 3.834 3 H 0.035 0.965 4 C -0.591 4.591 5 H 0.089 0.911 6 C -0.182 4.182 7 N -0.550 5.550 8 Si 0.798 3.202 9 H -0.208 1.208 10 H -0.191 1.191 11 H -0.197 1.197 12 N -0.316 5.316 13 C 0.283 3.717 14 O -0.434 6.434 15 C 0.301 3.699 16 O -0.345 6.345 17 N -0.258 5.258 18 C 0.056 3.944 19 N -0.300 5.300 20 C -0.013 4.013 21 N -0.157 5.157 22 C 0.049 3.951 23 C -0.124 4.124 24 C -0.124 4.124 25 C -0.155 4.155 26 C -0.139 4.139 27 C -0.157 4.157 28 C -0.118 4.118 29 N -0.177 5.177 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.247 0.753 35 H 0.278 0.722 36 H 0.292 0.708 37 H 0.127 0.873 38 H 0.177 0.823 39 H 0.163 0.837 40 H 0.157 0.843 41 H 0.154 0.846 42 H 0.150 0.850 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.372 -5.392 -31.368 32.279 hybrid contribution 0.025 0.139 0.797 0.809 sum 5.398 -5.253 -30.571 31.485 Atomic orbital electron populations 1.21938 0.97363 0.99883 1.00383 1.18658 0.91770 0.92459 0.80504 0.96536 1.21452 1.33144 1.13834 0.90652 0.91075 1.25744 0.94757 0.95580 1.02092 1.70015 1.36519 1.23561 1.24899 0.85378 0.78626 0.78673 0.77558 1.20849 1.19079 1.19693 1.46250 1.61714 1.14868 1.08795 1.19843 0.80268 0.86875 0.84707 1.90718 1.51417 1.16171 1.85075 1.20289 0.78858 0.86880 0.83888 1.90829 1.44719 1.14994 1.83967 1.42043 1.63562 1.15096 1.05078 1.20361 0.98062 0.88980 0.87009 1.70543 1.23980 1.13124 1.22319 1.27098 0.94227 0.95391 0.84607 1.50596 1.48307 1.06222 1.10539 1.21156 0.95288 1.06680 0.71927 1.19953 0.98036 0.94002 1.00414 1.21374 0.93675 1.00631 0.96741 1.21468 0.98473 0.95845 0.99706 1.21530 0.99237 0.93999 0.99124 1.21423 0.94890 1.00794 0.98584 1.21248 0.98191 0.95210 0.97185 1.78135 1.26955 1.12885 0.99757 0.94075 0.90666 0.96079 0.92297 0.75288 0.72170 0.70837 0.87329 0.82329 0.83739 0.84277 0.84570 0.84994 0.85887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.87 9.26 71.98 0.67 -6.20 16 2 C 0.27 13.93 2.56 44.24 0.11 14.05 16 3 H 0.02 0.99 7.58 -2.39 -0.02 0.97 16 4 C -0.55 -29.56 8.73 25.60 0.22 -29.34 16 5 H 0.07 3.63 7.74 -2.91 -0.02 3.60 16 6 C 0.02 1.02 5.30 84.66 0.45 1.47 16 7 N -0.91 -51.42 11.32 21.45 0.24 -51.18 16 8 Si 0.97 42.21 29.54 68.60 2.03 44.23 16 9 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 10 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 11 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 12 N -0.67 -29.66 5.06 -447.55 -2.27 -31.93 16 13 C 0.50 21.30 7.85 87.24 0.68 21.99 16 14 O -0.55 -25.68 16.14 -3.25 -0.05 -25.73 16 15 C 0.52 19.56 7.85 87.24 0.68 20.24 16 16 O -0.48 -19.18 15.15 -3.33 -0.05 -19.23 16 17 N -0.60 -19.74 5.42 -314.25 -1.70 -21.44 16 18 C 0.43 13.11 8.80 260.87 2.30 15.40 16 19 N -0.57 -16.51 9.37 -201.23 -1.89 -18.40 16 20 C 0.28 4.68 12.61 180.37 2.28 6.96 16 21 N -0.36 -6.06 3.68 -355.82 -1.31 -7.37 16 22 C 0.17 1.29 6.67 85.63 0.57 1.86 16 23 C -0.12 -1.52 5.34 -19.87 -0.11 -1.62 16 24 C -0.11 -1.18 9.70 22.27 0.22 -0.97 16 25 C -0.14 -1.66 10.05 22.27 0.22 -1.44 16 26 C -0.12 -1.59 10.05 22.27 0.22 -1.37 16 27 C -0.14 -2.02 10.05 22.27 0.22 -1.79 16 28 C -0.10 -1.49 9.70 22.27 0.22 -1.27 16 29 N -0.34 -8.87 12.57 -58.98 -0.74 -9.61 16 30 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.07 4.08 6.07 -2.39 -0.01 4.06 16 32 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 34 H 0.41 16.94 8.01 -92.70 -0.74 16.19 16 35 H 0.44 13.13 8.29 -92.71 -0.77 12.36 16 36 H 0.28 0.98 8.06 -2.91 -0.02 0.95 16 37 H 0.11 0.65 8.09 -2.39 -0.02 0.63 16 38 H 0.16 -0.26 8.03 -2.39 -0.02 -0.28 16 39 H 0.14 0.87 8.06 -2.91 -0.02 0.84 16 40 H 0.14 1.14 8.06 -2.91 -0.02 1.12 16 41 H 0.14 1.29 8.06 -2.91 -0.02 1.26 16 42 H 0.13 1.54 8.06 -2.91 -0.02 1.52 16 43 H 0.12 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -76.70 380.83 2.79 -73.91 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: -0.43 Total: 28.77 kcal Atomic # 6 Polarization: 29.01 SS G_CDS: 8.96 Total: 37.97 kcal Atomic # 7 Polarization: -132.27 SS G_CDS: -7.66 Total: -139.93 kcal Atomic # 8 Polarization: -44.85 SS G_CDS: -0.10 Total: -44.96 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Total: -76.70 2.79 -73.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527386750.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.506 kcal (2) G-P(sol) polarization free energy of solvation -76.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds