Wall clock time and date at job start Wed Apr 1 2020 01:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47261 * 2 1 4 4 C 1.50697 * 109.47308 * 239.99695 * 2 1 3 5 5 H 1.07995 * 120.00268 * 275.31228 * 4 2 1 6 6 C 1.37880 * 119.99931 * 95.31426 * 4 2 1 7 7 N 1.31512 * 120.00089 * 185.73106 * 6 4 2 8 8 Si 1.86800 * 119.99938 * 5.72086 * 6 4 2 9 9 H 1.48509 * 109.47021 * 85.01732 * 8 6 4 10 10 H 1.48500 * 109.47488 * 205.01567 * 8 6 4 11 11 H 1.48505 * 109.47376 * 325.01956 * 8 6 4 12 12 N 1.46497 * 109.46754 * 120.00054 * 2 1 3 13 13 C 1.34783 * 120.00240 * 274.99842 * 12 2 1 14 14 O 1.21355 * 119.99611 * 0.02562 * 13 12 2 15 15 C 1.49349 * 120.00122 * 180.02562 * 13 12 2 16 16 O 1.21375 * 120.00097 * 359.97438 * 15 13 12 17 17 N 1.34775 * 119.99851 * 179.97438 * 15 13 12 18 18 C 1.39740 * 120.00096 * 185.17314 * 17 15 13 19 19 C 1.39030 * 120.01797 * 213.11172 * 18 17 15 20 20 C 1.38158 * 120.16183 * 179.97438 * 19 18 17 21 21 C 1.38096 * 120.19756 * 359.97438 * 20 19 18 22 22 C 1.39342 * 120.03602 * 0.02562 * 21 20 19 23 23 C 1.48452 * 120.08145 * 180.02562 * 22 21 20 24 24 C 1.36477 * 126.90736 * 5.01357 * 23 22 21 25 25 N 1.35210 * 106.04732 * 179.97438 * 24 23 22 26 26 C 1.46504 * 125.75127 * 179.97438 * 25 24 23 27 27 N 1.28649 * 108.49670 * 0.02562 * 25 24 23 28 28 N 1.28617 * 110.48300 * 359.97438 * 27 25 24 29 29 C 1.38710 * 120.01749 * 33.36330 * 18 17 15 30 30 H 1.09001 * 109.46778 * 65.34513 * 1 2 3 31 31 H 1.08998 * 109.47300 * 185.34653 * 1 2 3 32 32 H 1.08999 * 109.47134 * 305.35280 * 1 2 3 33 33 H 0.97005 * 120.00067 * 179.97438 * 7 6 4 34 34 H 0.96997 * 120.00161 * 95.00431 * 12 2 1 35 35 H 0.96998 * 120.00080 * 5.17557 * 17 15 13 36 36 H 1.08003 * 119.91386 * 359.95780 * 19 18 17 37 37 H 1.08000 * 119.89601 * 179.97438 * 20 19 18 38 38 H 1.08002 * 119.98396 * 180.02562 * 21 20 19 39 39 H 1.08004 * 126.97537 * 359.96389 * 24 23 22 40 40 H 1.08998 * 109.47065 * 90.00488 * 26 25 24 41 41 H 1.09003 * 109.46947 * 210.00493 * 26 25 24 42 42 H 1.08998 * 109.47171 * 330.00125 * 26 25 24 43 43 H 1.08000 * 120.09898 * 0.04303 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1308 -1.7859 -1.2306 6 6 2.3665 0.0126 -2.3558 7 7 2.6967 -0.6123 -3.4649 8 14 2.3497 1.8799 -2.3054 9 1 3.6476 2.3725 -1.7779 10 1 2.1393 2.4103 -3.6764 11 1 1.2490 2.3414 -1.4218 12 7 2.0182 -0.6906 1.1962 13 6 2.1470 -0.0183 2.3572 14 8 1.8580 1.1591 2.4118 15 6 2.6452 -0.7222 3.5765 16 8 2.9338 -1.8999 3.5220 17 7 2.7744 -0.0498 4.7373 18 6 3.3415 -0.6779 5.8494 19 6 2.9036 -0.3554 7.1289 20 6 3.4618 -0.9750 8.2304 21 6 4.4571 -1.9182 8.0666 22 6 4.9023 -2.2477 6.7880 23 6 5.9718 -3.2619 6.6108 24 6 6.5486 -4.0236 7.5853 25 7 7.4644 -4.7981 6.9613 26 6 8.3358 -5.7827 7.6076 27 7 7.4424 -4.5241 5.7046 28 7 6.5669 -3.6149 5.4574 29 6 4.3452 -1.6198 5.6775 30 1 -0.3633 0.4287 -0.9340 31 1 -0.3634 -1.0232 0.0958 32 1 -0.3633 0.5946 0.8382 33 1 2.9314 -0.1036 -4.2568 34 1 2.2490 -1.6317 1.1526 35 1 2.4738 0.8702 4.8009 36 1 2.1253 0.3815 7.2620 37 1 3.1187 -0.7209 9.2224 38 1 4.8908 -2.4007 8.9301 39 1 6.3200 -4.0102 8.6408 40 1 7.8392 -6.7528 7.6229 41 1 9.2701 -5.8614 7.0516 42 1 8.5466 -5.4662 8.6291 43 1 4.6904 -1.8685 4.6848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568533678.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:10 Heat of formation + Delta-G solvation = 63.393537 kcal Electronic energy + Delta-G solvation = -28358.184970 eV Core-core repulsion = 24213.169753 eV Total energy + Delta-G solvation = -4145.015216 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.45810 -40.80671 -39.19947 -37.93180 -35.57008 -35.07865 -34.57835 -32.52581 -32.34749 -30.42348 -29.92343 -29.37116 -28.23884 -25.43436 -24.98054 -24.09601 -22.99379 -21.71086 -21.26463 -20.46748 -19.69185 -18.75852 -18.01307 -17.01008 -16.90762 -16.78197 -16.41139 -15.84894 -15.72441 -15.16724 -15.07472 -14.76919 -14.33603 -14.03983 -13.87915 -13.87119 -13.52373 -13.38714 -13.23099 -12.90646 -12.55390 -12.46449 -12.18034 -12.02150 -11.59049 -11.54515 -11.27543 -11.12761 -11.02915 -10.88221 -10.79783 -10.61191 -10.35608 -9.96471 -9.89341 -9.26381 -9.17437 -8.72326 -8.58120 -8.31212 -8.22484 -6.24977 -4.29636 0.68238 1.11497 1.42141 1.84811 2.00789 2.49248 2.63668 3.25588 3.33190 3.38544 3.56089 3.79516 3.85773 4.01815 4.16852 4.30243 4.40831 4.48796 4.64330 4.77683 4.82507 4.92972 4.93204 4.97426 5.19846 5.22468 5.36276 5.49424 5.59244 5.87415 6.10284 6.18186 6.19890 6.23981 6.28772 6.40333 6.46135 6.59414 6.80015 6.81623 6.99549 7.16117 7.26142 7.41530 7.79479 8.07252 8.24703 8.43619 8.60209 8.78721 9.34831 10.86471 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.013355 B = 0.002469 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.036557 B =11336.838330 C =12919.429767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.228 3.772 3 H 0.055 0.945 4 C -0.533 4.533 5 H 0.082 0.918 6 C 0.083 3.917 7 N -0.883 5.883 8 Si 0.873 3.127 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.259 1.259 12 N -0.662 5.662 13 C 0.495 3.505 14 O -0.541 6.541 15 C 0.506 3.494 16 O -0.494 6.494 17 N -0.653 5.653 18 C 0.153 3.847 19 C -0.138 4.138 20 C -0.098 4.098 21 C -0.123 4.123 22 C 0.010 3.990 23 C 0.023 3.977 24 C -0.040 4.040 25 N -0.295 5.295 26 C 0.081 3.919 27 N -0.081 5.081 28 N -0.246 5.246 29 C -0.094 4.094 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.030 0.970 33 H 0.269 0.731 34 H 0.407 0.593 35 H 0.423 0.577 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.124 0.876 39 H 0.194 0.806 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.806 -5.480 29.918 31.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.126 3.874 3 H 0.073 0.927 4 C -0.571 4.571 5 H 0.100 0.900 6 C -0.123 4.123 7 N -0.519 5.519 8 Si 0.700 3.300 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.184 1.184 12 N -0.312 5.312 13 C 0.274 3.726 14 O -0.420 6.420 15 C 0.288 3.712 16 O -0.366 6.366 17 N -0.300 5.300 18 C 0.058 3.942 19 C -0.159 4.159 20 C -0.117 4.117 21 C -0.143 4.143 22 C 0.007 3.993 23 C -0.113 4.113 24 C -0.191 4.191 25 N -0.088 5.088 26 C -0.060 4.060 27 N -0.061 5.061 28 N -0.113 5.113 29 C -0.114 4.114 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.079 0.921 34 H 0.243 0.757 35 H 0.261 0.739 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.142 0.858 39 H 0.211 0.789 40 H 0.111 0.889 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 7.513 -5.855 28.169 29.736 hybrid contribution -0.306 0.980 1.060 1.475 sum 7.206 -4.875 29.229 30.497 Atomic orbital electron populations 1.22228 0.97891 1.00455 1.00133 1.19363 0.91407 0.94476 0.82135 0.92702 1.20982 1.45564 0.95863 0.94685 0.89960 1.24947 0.93497 0.98718 0.95089 1.69880 1.44234 1.36296 1.01502 0.86902 0.79838 0.85727 0.77562 1.19705 1.21028 1.18387 1.46712 1.60968 1.14880 1.08625 1.19791 0.80902 0.87289 0.84632 1.90709 1.51127 1.15296 1.84910 1.20926 0.78450 0.87069 0.84729 1.90794 1.46365 1.15038 1.84429 1.43243 1.60293 1.17350 1.09140 1.17658 0.93703 0.96291 0.86520 1.21008 1.01302 1.02756 0.90861 1.20770 0.96349 0.96216 0.98344 1.20975 0.98635 0.99188 0.95490 1.17440 0.93978 0.94648 0.93224 1.20382 1.00592 1.00738 0.89626 1.23475 0.96521 0.97994 1.01094 1.47194 1.26760 1.27984 1.06817 1.22294 0.94514 0.90565 0.98634 1.78333 1.18013 1.13455 0.96249 1.75410 1.04832 1.07599 1.23467 1.21277 0.93900 0.95986 1.00287 0.92161 0.93293 0.95044 0.92093 0.75711 0.73878 0.85221 0.85146 0.85823 0.78937 0.88924 0.87870 0.88243 0.83484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 9.47 37.16 0.35 -2.85 16 2 C 0.23 5.44 2.24 -69.09 -0.15 5.28 16 3 H 0.06 1.39 4.67 -51.93 -0.24 1.15 16 4 C -0.53 -14.49 9.04 -34.44 -0.31 -14.81 16 5 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 6 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 7 N -0.88 -26.15 13.96 55.43 0.77 -25.37 16 8 Si 0.87 21.34 27.02 -169.99 -4.59 16.75 16 9 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.26 -6.16 6.77 56.52 0.38 -5.77 16 12 N -0.66 -14.13 5.06 -55.40 -0.28 -14.41 16 13 C 0.50 9.82 7.85 -11.63 -0.09 9.73 16 14 O -0.54 -11.49 16.15 5.49 0.09 -11.40 16 15 C 0.51 8.80 7.62 -11.63 -0.09 8.72 16 16 O -0.49 -9.51 14.16 5.48 0.08 -9.44 16 17 N -0.65 -9.15 5.32 -10.32 -0.05 -9.20 16 18 C 0.15 2.00 6.27 -83.78 -0.53 1.47 16 19 C -0.14 -1.35 9.96 -39.32 -0.39 -1.74 16 20 C -0.10 -0.79 10.03 -39.66 -0.40 -1.19 16 21 C -0.12 -1.07 9.58 -39.22 -0.38 -1.44 16 22 C 0.01 0.12 5.87 -104.92 -0.62 -0.50 16 23 C 0.02 0.30 6.98 -83.12 -0.58 -0.28 16 24 C -0.04 -0.33 11.00 -16.70 -0.18 -0.52 16 25 N -0.29 -2.60 3.73 -67.78 -0.25 -2.86 16 26 C 0.08 0.24 11.38 59.85 0.68 0.92 16 27 N -0.08 -1.10 13.14 60.35 0.79 -0.30 16 28 N -0.25 -3.88 12.17 33.06 0.40 -3.48 16 29 C -0.09 -1.37 8.31 -39.05 -0.32 -1.70 16 30 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.41 8.35 8.06 -40.82 -0.33 8.02 16 35 H 0.42 5.08 8.29 -40.82 -0.34 4.74 16 36 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 37 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.12 0.65 7.13 -52.49 -0.37 0.28 16 39 H 0.19 0.69 7.42 -52.48 -0.39 0.30 16 40 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 41 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.10 -0.01 8.14 -51.93 -0.42 -0.43 16 43 H 0.15 2.59 6.26 -52.49 -0.33 2.27 16 LS Contribution 375.94 15.07 5.67 5.67 Total: -1.00 -36.33 375.94 -5.45 -41.78 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -4.96 Total: 8.97 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -3.11 Total: 3.31 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: 1.38 Total: -55.63 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: 0.17 Total: -20.84 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.59 Total: 16.75 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.33 -5.45 -41.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568533678.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.172 kcal (2) G-P(sol) polarization free energy of solvation -36.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds