Wall clock time and date at job start Wed Apr 1 2020 01:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47261 * 2 1 4 4 C 1.50697 * 109.47308 * 239.99695 * 2 1 3 5 5 H 1.07995 * 120.00268 * 275.31228 * 4 2 1 6 6 C 1.37880 * 119.99931 * 95.31426 * 4 2 1 7 7 N 1.31512 * 120.00089 * 185.73106 * 6 4 2 8 8 Si 1.86800 * 119.99938 * 5.72086 * 6 4 2 9 9 H 1.48509 * 109.47021 * 85.01732 * 8 6 4 10 10 H 1.48500 * 109.47488 * 205.01567 * 8 6 4 11 11 H 1.48505 * 109.47376 * 325.01956 * 8 6 4 12 12 N 1.46497 * 109.46754 * 120.00054 * 2 1 3 13 13 C 1.34783 * 120.00240 * 274.99842 * 12 2 1 14 14 O 1.21355 * 119.99611 * 0.02562 * 13 12 2 15 15 C 1.49349 * 120.00122 * 180.02562 * 13 12 2 16 16 O 1.21375 * 120.00097 * 359.97438 * 15 13 12 17 17 N 1.34775 * 119.99851 * 179.97438 * 15 13 12 18 18 C 1.39740 * 120.00096 * 185.17314 * 17 15 13 19 19 C 1.39030 * 120.01797 * 213.11172 * 18 17 15 20 20 C 1.38158 * 120.16183 * 179.97438 * 19 18 17 21 21 C 1.38096 * 120.19756 * 359.97438 * 20 19 18 22 22 C 1.39342 * 120.03602 * 0.02562 * 21 20 19 23 23 C 1.48452 * 120.08145 * 180.02562 * 22 21 20 24 24 C 1.36477 * 126.90736 * 5.01357 * 23 22 21 25 25 N 1.35210 * 106.04732 * 179.97438 * 24 23 22 26 26 C 1.46504 * 125.75127 * 179.97438 * 25 24 23 27 27 N 1.28649 * 108.49670 * 0.02562 * 25 24 23 28 28 N 1.28617 * 110.48300 * 359.97438 * 27 25 24 29 29 C 1.38710 * 120.01749 * 33.36330 * 18 17 15 30 30 H 1.09001 * 109.46778 * 65.34513 * 1 2 3 31 31 H 1.08998 * 109.47300 * 185.34653 * 1 2 3 32 32 H 1.08999 * 109.47134 * 305.35280 * 1 2 3 33 33 H 0.97005 * 120.00067 * 179.97438 * 7 6 4 34 34 H 0.96997 * 120.00161 * 95.00431 * 12 2 1 35 35 H 0.96998 * 120.00080 * 5.17557 * 17 15 13 36 36 H 1.08003 * 119.91386 * 359.95780 * 19 18 17 37 37 H 1.08000 * 119.89601 * 179.97438 * 20 19 18 38 38 H 1.08002 * 119.98396 * 180.02562 * 21 20 19 39 39 H 1.08004 * 126.97537 * 359.96389 * 24 23 22 40 40 H 1.08998 * 109.47065 * 90.00488 * 26 25 24 41 41 H 1.09003 * 109.46947 * 210.00493 * 26 25 24 42 42 H 1.08998 * 109.47171 * 330.00125 * 26 25 24 43 43 H 1.08000 * 120.09898 * 0.04303 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1308 -1.7859 -1.2306 6 6 2.3665 0.0126 -2.3558 7 7 2.6967 -0.6123 -3.4649 8 14 2.3497 1.8799 -2.3054 9 1 3.6476 2.3725 -1.7779 10 1 2.1393 2.4103 -3.6764 11 1 1.2490 2.3414 -1.4218 12 7 2.0182 -0.6906 1.1962 13 6 2.1470 -0.0183 2.3572 14 8 1.8580 1.1591 2.4118 15 6 2.6452 -0.7222 3.5765 16 8 2.9338 -1.8999 3.5220 17 7 2.7744 -0.0498 4.7373 18 6 3.3415 -0.6779 5.8494 19 6 2.9036 -0.3554 7.1289 20 6 3.4618 -0.9750 8.2304 21 6 4.4571 -1.9182 8.0666 22 6 4.9023 -2.2477 6.7880 23 6 5.9718 -3.2619 6.6108 24 6 6.5486 -4.0236 7.5853 25 7 7.4644 -4.7981 6.9613 26 6 8.3358 -5.7827 7.6076 27 7 7.4424 -4.5241 5.7046 28 7 6.5669 -3.6149 5.4574 29 6 4.3452 -1.6198 5.6775 30 1 -0.3633 0.4287 -0.9340 31 1 -0.3634 -1.0232 0.0958 32 1 -0.3633 0.5946 0.8382 33 1 2.9314 -0.1036 -4.2568 34 1 2.2490 -1.6317 1.1526 35 1 2.4738 0.8702 4.8009 36 1 2.1253 0.3815 7.2620 37 1 3.1187 -0.7209 9.2224 38 1 4.8908 -2.4007 8.9301 39 1 6.3200 -4.0102 8.6408 40 1 7.8392 -6.7528 7.6229 41 1 9.2701 -5.8614 7.0516 42 1 8.5466 -5.4662 8.6291 43 1 4.6904 -1.8685 4.6848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568533678.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:09 Heat of formation + Delta-G solvation = 34.415519 kcal Electronic energy + Delta-G solvation = -28359.441551 eV Core-core repulsion = 24213.169753 eV Total energy + Delta-G solvation = -4146.271797 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.22337 -42.11116 -40.45342 -39.23475 -37.12182 -36.21223 -35.54084 -34.43372 -33.28630 -31.82563 -31.20678 -30.22463 -28.72901 -27.40522 -26.41268 -24.91536 -23.95411 -22.78578 -22.16263 -21.83464 -21.28663 -20.19170 -19.00876 -18.58068 -18.00641 -17.58655 -17.32689 -17.23826 -17.02006 -16.85467 -16.11816 -15.81525 -15.66821 -15.21173 -15.00845 -14.83210 -14.57956 -14.39130 -14.37069 -14.29971 -13.81717 -13.73939 -13.34445 -13.10354 -13.01395 -12.92978 -12.84499 -12.56678 -12.40664 -12.33677 -11.88027 -11.85864 -11.73440 -11.31326 -11.13487 -10.89133 -10.75371 -10.68476 -10.09149 -9.46569 -9.09773 -8.42195 -6.51141 -0.13646 0.10144 0.62034 0.67183 1.24286 1.33715 1.34241 1.44169 1.54204 1.65145 2.09970 2.25109 2.60982 2.93734 2.99036 3.19199 3.41620 3.66664 3.89703 4.04538 4.11589 4.22795 4.31382 4.34917 4.34953 4.50579 4.54193 4.64561 4.68886 4.73672 4.80070 4.80269 4.98604 5.10524 5.19738 5.27806 5.30351 5.39425 5.48716 5.50879 5.57774 5.64574 5.85535 6.00224 6.08778 6.48243 6.56306 6.71727 6.93305 7.17453 7.43718 8.73035 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.013355 B = 0.002469 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.036557 B =11336.838330 C =12919.429767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.231 3.769 3 H 0.045 0.955 4 C -0.536 4.536 5 H 0.050 0.950 6 C 0.031 3.969 7 N -0.928 5.928 8 Si 0.932 3.068 9 H -0.273 1.273 10 H -0.274 1.274 11 H -0.245 1.245 12 N -0.671 5.671 13 C 0.499 3.501 14 O -0.552 6.552 15 C 0.510 3.490 16 O -0.521 6.521 17 N -0.634 5.634 18 C 0.122 3.878 19 C -0.130 4.130 20 C -0.086 4.086 21 C -0.104 4.104 22 C -0.006 4.006 23 C -0.012 4.012 24 C -0.008 4.008 25 N -0.285 5.285 26 C 0.067 3.933 27 N -0.126 5.126 28 N -0.311 5.311 29 C -0.128 4.128 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.046 0.954 33 H 0.273 0.727 34 H 0.409 0.591 35 H 0.432 0.568 36 H 0.157 0.843 37 H 0.177 0.823 38 H 0.170 0.830 39 H 0.251 0.749 40 H 0.109 0.891 41 H 0.103 0.897 42 H 0.141 0.859 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.371 -4.591 35.505 36.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.129 3.871 3 H 0.063 0.937 4 C -0.574 4.574 5 H 0.068 0.932 6 C -0.170 4.170 7 N -0.566 5.566 8 Si 0.755 3.245 9 H -0.199 1.199 10 H -0.199 1.199 11 H -0.169 1.169 12 N -0.320 5.320 13 C 0.279 3.721 14 O -0.432 6.432 15 C 0.292 3.708 16 O -0.395 6.395 17 N -0.282 5.282 18 C 0.029 3.971 19 C -0.150 4.150 20 C -0.104 4.104 21 C -0.123 4.123 22 C -0.008 4.008 23 C -0.150 4.150 24 C -0.161 4.161 25 N -0.078 5.078 26 C -0.071 4.071 27 N -0.105 5.105 28 N -0.176 5.176 29 C -0.149 4.149 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.244 0.756 35 H 0.272 0.728 36 H 0.175 0.825 37 H 0.195 0.805 38 H 0.188 0.812 39 H 0.267 0.733 40 H 0.127 0.873 41 H 0.121 0.879 42 H 0.159 0.841 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.102 -4.970 33.794 34.888 hybrid contribution -0.081 0.571 -0.429 0.719 sum 7.021 -4.400 33.364 34.378 Atomic orbital electron populations 1.22122 0.95874 1.01330 1.00750 1.19185 0.92848 0.93415 0.81672 0.93713 1.21147 1.45280 0.94680 0.96309 0.93157 1.25719 0.93296 1.03295 0.94660 1.69994 1.46039 1.38194 1.02372 0.85971 0.80058 0.80227 0.78234 1.19862 1.19925 1.16866 1.46482 1.61785 1.14974 1.08800 1.20085 0.80029 0.87044 0.84930 1.90685 1.51444 1.15737 1.85293 1.20352 0.78771 0.86642 0.85002 1.90801 1.47923 1.16039 1.84782 1.43053 1.59138 1.17507 1.08464 1.17883 0.94603 0.97346 0.87267 1.21384 1.01352 1.02732 0.89540 1.21350 0.94905 0.94530 0.99627 1.21492 0.97610 0.98258 0.94988 1.17702 0.94261 0.94786 0.94097 1.20828 1.01762 1.02375 0.90053 1.24230 0.94146 0.95222 1.02466 1.47705 1.26548 1.27767 1.05733 1.22834 0.93812 0.90252 1.00213 1.78218 1.18957 1.14445 0.98892 1.75332 1.06615 1.09389 1.26305 1.21087 0.96077 0.98342 0.99409 0.92204 0.92555 0.93470 0.91798 0.75554 0.72775 0.82549 0.80532 0.81223 0.73260 0.87293 0.87859 0.84097 0.88152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.08 9.47 71.98 0.68 -5.39 16 2 C 0.23 11.22 2.24 44.24 0.10 11.31 16 3 H 0.05 2.27 4.67 -2.39 -0.01 2.26 16 4 C -0.54 -30.25 9.04 25.60 0.23 -30.02 16 5 H 0.05 3.09 8.06 -2.91 -0.02 3.07 16 6 C 0.03 1.80 5.47 84.66 0.46 2.26 16 7 N -0.93 -56.78 13.96 21.45 0.30 -56.48 16 8 Si 0.93 44.45 27.02 68.60 1.85 46.30 16 9 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 10 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.25 -11.04 6.77 99.48 0.67 -10.37 16 12 N -0.67 -29.64 5.06 -447.54 -2.27 -31.91 16 13 C 0.50 20.25 7.85 87.24 0.68 20.93 16 14 O -0.55 -23.34 16.15 -3.26 -0.05 -23.39 16 15 C 0.51 18.56 7.62 87.24 0.66 19.23 16 16 O -0.52 -21.57 14.16 -3.32 -0.05 -21.62 16 17 N -0.63 -17.97 5.32 -304.92 -1.62 -19.59 16 18 C 0.12 3.17 6.27 38.18 0.24 3.41 16 19 C -0.13 -2.11 9.96 22.44 0.22 -1.89 16 20 C -0.09 -0.93 10.03 22.22 0.22 -0.71 16 21 C -0.10 -1.34 9.58 22.50 0.22 -1.12 16 22 C -0.01 -0.14 5.87 -20.06 -0.12 -0.26 16 23 C -0.01 -0.30 6.98 41.05 0.29 -0.02 16 24 C -0.01 -0.11 11.00 83.76 0.92 0.81 16 25 N -0.28 -4.59 3.73 -368.35 -1.37 -5.97 16 26 C 0.07 0.20 11.38 127.77 1.45 1.66 16 27 N -0.13 -3.59 13.14 37.02 0.49 -3.10 16 28 N -0.31 -10.57 12.17 -49.31 -0.60 -11.17 16 29 C -0.13 -3.95 8.31 22.62 0.19 -3.77 16 30 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.27 15.55 8.31 -92.70 -0.77 14.77 16 34 H 0.41 17.83 8.06 -92.71 -0.75 17.08 16 35 H 0.43 10.13 8.29 -92.71 -0.77 9.36 16 36 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 37 H 0.18 0.40 8.06 -2.91 -0.02 0.38 16 38 H 0.17 0.56 7.13 -2.91 -0.02 0.54 16 39 H 0.25 0.12 7.42 -2.91 -0.02 0.10 16 40 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 41 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 42 H 0.14 -0.72 8.14 -2.39 -0.02 -0.74 16 43 H 0.10 4.00 6.26 -2.91 -0.02 3.99 16 Total: -1.00 -88.25 375.94 2.68 -85.57 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: -0.46 Total: 24.91 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: 6.46 Total: 16.44 kcal Atomic # 7 Polarization: -123.13 SS G_CDS: -5.08 Total: -128.21 kcal Atomic # 8 Polarization: -44.91 SS G_CDS: -0.10 Total: -45.01 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.85 Total: 46.30 kcal Total: -88.25 2.68 -85.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568533678.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.985 kcal (2) G-P(sol) polarization free energy of solvation -88.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds