Wall clock time and date at job start Wed Apr 1 2020 01:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08998 * 109.46636 * 2 1 4 4 C 1.50694 * 109.46808 * 240.00628 * 2 1 3 5 5 H 1.08008 * 119.99719 * 239.99618 * 4 2 1 6 6 C 1.37874 * 120.00566 * 59.99577 * 4 2 1 7 7 N 1.31510 * 119.99816 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 120.00174 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47111 * 90.00185 * 8 6 4 10 10 H 1.48497 * 109.46946 * 210.00046 * 8 6 4 11 11 H 1.48499 * 109.47032 * 330.00084 * 8 6 4 12 12 N 1.46494 * 109.47200 * 120.00473 * 2 1 3 13 13 C 1.46493 * 120.00444 * 60.27260 * 12 2 1 14 14 S 1.65608 * 119.99583 * 239.99941 * 12 2 1 15 15 O 1.42100 * 106.40059 * 203.54152 * 14 12 2 16 16 O 1.42096 * 106.40050 * 336.46185 * 14 12 2 17 17 N 1.65599 * 107.21718 * 90.00246 * 14 12 2 18 18 C 1.46928 * 120.62690 * 269.71613 * 17 14 12 19 19 C 1.52761 * 109.00989 * 233.58149 * 18 17 14 20 20 C 1.53041 * 109.38557 * 305.59701 * 19 18 17 21 21 C 1.50700 * 109.44835 * 181.24929 * 20 19 18 22 22 N 1.30263 * 125.61673 * 119.93623 * 21 20 19 23 23 C 1.34474 * 108.69949 * 179.97438 * 22 21 20 24 24 C 1.34332 * 107.67015 * 359.97438 * 23 22 21 25 25 O 1.33966 * 125.62287 * 299.62546 * 21 20 19 26 26 C 1.53031 * 109.54041 * 61.23405 * 20 19 18 27 27 C 1.46924 * 120.63450 * 89.99741 * 17 14 12 28 28 H 1.08998 * 109.46636 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46705 * 299.99354 * 1 2 3 30 30 H 1.08996 * 109.47197 * 60.00061 * 1 2 3 31 31 H 0.97007 * 120.00492 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47297 * 269.72722 * 13 12 2 33 33 H 1.09002 * 109.47192 * 29.72648 * 13 12 2 34 34 H 1.08996 * 109.47342 * 149.72358 * 13 12 2 35 35 H 1.08993 * 109.58979 * 353.42175 * 18 17 14 36 36 H 1.09003 * 109.58350 * 113.84525 * 18 17 14 37 37 H 1.08997 * 109.56663 * 185.55527 * 19 18 17 38 38 H 1.09003 * 109.38202 * 65.51987 * 19 18 17 39 39 H 1.09005 * 109.45586 * 301.21370 * 20 19 18 40 40 H 1.07998 * 126.16701 * 180.02562 * 23 22 21 41 41 H 1.08003 * 126.44643 * 180.02562 * 24 23 22 42 42 H 1.09007 * 109.49816 * 178.68532 * 26 20 19 43 43 H 1.08998 * 109.49851 * 58.59060 * 26 20 19 44 44 H 1.08999 * 109.58888 * 246.15891 * 27 17 14 45 45 H 1.09004 * 109.58618 * 6.43647 * 27 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3213 -1.1202 -4.0081 9 1 1.3426 -2.1615 -4.4120 10 1 2.4864 -0.1412 -5.1123 11 1 3.6292 -1.7582 -3.7124 12 7 2.0184 -0.6907 1.1961 13 6 1.6695 -2.0949 1.4248 14 16 2.9706 0.1142 2.2861 15 8 3.7120 -0.8789 2.9813 16 8 3.5794 1.1829 1.5747 17 7 1.9609 0.8089 3.3998 18 6 1.4423 2.1683 3.1947 19 6 1.7577 3.0125 4.4281 20 6 1.2128 2.3129 5.6754 21 6 1.4962 3.1593 6.8897 22 7 0.6002 3.6528 7.6963 23 6 1.2260 4.3500 8.6610 24 6 2.5467 4.2737 8.4279 25 8 2.7112 3.5234 7.3207 26 6 1.8899 0.9498 5.8348 27 6 1.5714 0.0801 4.6146 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8900 31 1 0.7094 1.1620 -3.4843 32 1 0.7442 -2.1507 1.9982 33 1 1.5339 -2.5964 0.4666 34 1 2.4708 -2.5826 1.9799 35 1 1.9161 2.6118 2.3191 36 1 0.3629 2.1293 3.0483 37 1 1.2922 3.9929 4.3282 38 1 2.8376 3.1301 4.5195 39 1 0.1365 2.1739 5.5728 40 1 0.7522 4.8758 9.4767 41 1 3.3297 4.7254 9.0189 42 1 1.5184 0.4622 6.7362 43 1 2.9685 1.0863 5.9128 44 1 0.5027 -0.1326 4.5864 45 1 2.1285 -0.8549 4.6742 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601495914.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:16 Heat of formation + Delta-G solvation = -49.728980 kcal Electronic energy + Delta-G solvation = -29310.325874 eV Core-core repulsion = 25263.556497 eV Total energy + Delta-G solvation = -4046.769377 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.54405 -38.66133 -36.77611 -36.14393 -35.24562 -34.94179 -33.43851 -32.58088 -31.23618 -29.63647 -29.09989 -25.53186 -25.25488 -25.07561 -23.48718 -22.85375 -21.73666 -20.75561 -20.36310 -18.47444 -17.78015 -17.26681 -16.87616 -16.75480 -16.30558 -15.67154 -15.27476 -15.00556 -14.93552 -14.51416 -14.32966 -13.87554 -13.70807 -13.41099 -13.34106 -13.15421 -12.68726 -12.53552 -12.14009 -11.99162 -11.82214 -11.65671 -11.52425 -11.38647 -11.36231 -11.27131 -11.23087 -10.92036 -10.85782 -10.83397 -10.81207 -10.68271 -10.41699 -10.23342 -10.06458 -9.28636 -9.10524 -8.94304 -8.46478 -7.96898 -6.08633 -4.15072 1.13237 1.24160 2.46302 2.54149 3.27562 3.34783 3.37372 3.40717 3.73696 4.02845 4.39045 4.46339 4.54992 4.70011 4.79661 4.83421 4.98502 5.08667 5.12166 5.23225 5.25970 5.39131 5.50836 5.57157 5.65090 5.66507 5.72362 5.73115 5.80030 5.92143 6.03930 6.09971 6.14577 6.20422 6.36086 6.62195 6.68631 6.83405 6.83921 7.02988 7.46111 7.51962 7.61937 7.78104 8.03862 8.26580 8.86788 9.50692 10.97005 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.024774 B = 0.002883 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.960066 B = 9711.324521 C =10038.887641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.268 3.732 3 H 0.058 0.942 4 C -0.521 4.521 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.989 5.989 13 C 0.097 3.903 14 S 2.777 3.223 15 O -0.994 6.994 16 O -0.971 6.971 17 N -1.012 6.012 18 C 0.123 3.877 19 C -0.127 4.127 20 C 0.011 3.989 21 C 0.206 3.794 22 N -0.488 5.488 23 C -0.046 4.046 24 C -0.081 4.081 25 O -0.198 6.198 26 C -0.127 4.127 27 C 0.124 3.876 28 H 0.032 0.968 29 H 0.010 0.990 30 H 0.092 0.908 31 H 0.263 0.737 32 H 0.037 0.963 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.102 0.898 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.116 0.884 40 H 0.182 0.818 41 H 0.214 0.786 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.479 3.770 19.584 19.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.165 3.835 3 H 0.075 0.925 4 C -0.561 4.561 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.831 5.831 13 C -0.050 4.050 14 S 2.788 3.212 15 O -0.978 6.978 16 O -0.955 6.955 17 N -0.850 5.850 18 C -0.003 4.003 19 C -0.167 4.167 20 C -0.009 4.009 21 C -0.001 4.001 22 N -0.216 5.216 23 C -0.184 4.184 24 C -0.152 4.152 25 O -0.084 6.084 26 C -0.166 4.166 27 C -0.002 4.002 28 H 0.051 0.949 29 H 0.029 0.971 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.120 0.880 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.134 0.866 40 H 0.200 0.800 41 H 0.230 0.770 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.210 3.838 19.334 19.748 hybrid contribution 0.521 -0.122 -0.455 0.703 sum -0.689 3.716 18.879 19.253 Atomic orbital electron populations 1.22105 0.98195 0.99763 1.00501 1.18721 0.91312 0.92951 0.80488 0.92453 1.21334 1.31610 1.13029 0.90085 0.91956 1.24897 0.94952 0.94994 0.98979 1.69853 1.36544 1.22631 1.23797 0.86506 0.79290 0.79313 0.82367 1.20650 1.21110 1.19844 1.57718 1.70001 1.19740 1.35650 1.21293 0.98722 0.82297 1.02675 1.02040 0.73775 0.73080 0.72345 1.93510 1.69259 1.60458 1.74617 1.93589 1.73899 1.55868 1.72127 1.58465 1.67849 1.24278 1.34445 1.21279 1.00119 0.80895 0.98006 1.21915 1.02484 0.99071 0.93230 1.19807 1.02844 0.92004 0.86228 1.26454 0.77017 0.98520 0.98106 1.70500 1.33707 1.12749 1.04672 1.23366 0.91391 1.03025 1.00650 1.25053 0.99840 1.00102 0.90216 1.84472 1.34829 1.52941 1.36177 1.21969 1.01781 0.93958 0.98934 1.21320 1.01081 0.94898 0.82945 0.94883 0.97064 0.88995 0.92689 0.94454 0.89862 0.92021 0.87995 0.90896 0.90033 0.90596 0.86560 0.80045 0.76980 0.90238 0.90568 0.91097 0.88535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 8.98 37.16 0.33 -2.88 16 2 C 0.27 6.38 2.62 -69.08 -0.18 6.19 16 3 H 0.06 1.50 6.91 -51.93 -0.36 1.15 16 4 C -0.52 -13.79 7.98 -34.44 -0.27 -14.06 16 5 H 0.06 1.64 7.32 -52.48 -0.38 1.26 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.34 11.32 55.43 0.63 -23.71 16 8 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 N -0.99 -19.96 3.12 -115.86 -0.36 -20.32 16 13 C 0.10 1.67 9.66 59.84 0.58 2.25 16 14 S 2.78 53.03 6.15 -107.50 -0.66 52.37 16 15 O -0.99 -19.88 15.33 -57.17 -0.88 -20.76 16 16 O -0.97 -21.95 15.28 -57.17 -0.87 -22.82 16 17 N -1.01 -14.58 3.35 -113.77 -0.38 -14.96 16 18 C 0.12 1.60 6.45 -3.93 -0.03 1.57 16 19 C -0.13 -1.41 5.33 -26.83 -0.14 -1.56 16 20 C 0.01 0.11 2.62 -91.73 -0.24 -0.13 16 21 C 0.21 2.38 6.85 -12.94 -0.09 2.29 16 22 N -0.49 -5.92 11.29 -11.10 -0.13 -6.05 16 23 C -0.05 -0.43 11.89 -17.77 -0.21 -0.64 16 24 C -0.08 -0.69 12.18 29.35 0.36 -0.33 16 25 O -0.20 -2.24 10.78 5.37 0.06 -2.18 16 26 C -0.13 -1.29 5.34 -26.61 -0.14 -1.44 16 27 C 0.12 1.41 6.48 -3.71 -0.02 1.38 16 28 H 0.03 0.69 7.68 -51.93 -0.40 0.29 16 29 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 2.25 6.07 -51.93 -0.32 1.94 16 31 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 1.52 7.00 -51.93 -0.36 1.16 16 34 H 0.06 1.00 7.02 -51.93 -0.36 0.63 16 35 H 0.10 1.51 6.91 -51.93 -0.36 1.15 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.18 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.21 0.88 8.06 -52.48 -0.42 0.46 16 42 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 43 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.10 1.13 6.92 -51.93 -0.36 0.77 16 LS Contribution 372.67 15.07 5.62 5.62 Total: -1.00 -33.17 372.67 -8.84 -42.01 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.69 Total: 0.66 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -0.16 Total: -5.72 kcal Atomic # 7 Polarization: -64.80 SS G_CDS: -0.24 Total: -65.04 kcal Atomic # 8 Polarization: -44.06 SS G_CDS: -1.69 Total: -45.76 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 53.03 SS G_CDS: -0.66 Total: 52.37 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.17 -8.84 -42.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601495914.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.719 kcal (2) G-P(sol) polarization free energy of solvation -33.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds