Wall clock time and date at job start Wed Apr 1 2020 01:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08998 * 109.46636 * 2 1 4 4 C 1.50694 * 109.46808 * 240.00628 * 2 1 3 5 5 H 1.08008 * 119.99719 * 239.99618 * 4 2 1 6 6 C 1.37874 * 120.00566 * 59.99577 * 4 2 1 7 7 N 1.31510 * 119.99816 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 120.00174 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47111 * 90.00185 * 8 6 4 10 10 H 1.48497 * 109.46946 * 210.00046 * 8 6 4 11 11 H 1.48499 * 109.47032 * 330.00084 * 8 6 4 12 12 N 1.46494 * 109.47200 * 120.00473 * 2 1 3 13 13 C 1.46493 * 120.00444 * 60.27260 * 12 2 1 14 14 S 1.65608 * 119.99583 * 239.99941 * 12 2 1 15 15 O 1.42100 * 106.40059 * 203.54152 * 14 12 2 16 16 O 1.42096 * 106.40050 * 336.46185 * 14 12 2 17 17 N 1.65599 * 107.21718 * 90.00246 * 14 12 2 18 18 C 1.46928 * 120.62690 * 269.71613 * 17 14 12 19 19 C 1.52761 * 109.00989 * 233.58149 * 18 17 14 20 20 C 1.53041 * 109.38557 * 305.59701 * 19 18 17 21 21 C 1.50700 * 109.44835 * 181.24929 * 20 19 18 22 22 N 1.30263 * 125.61673 * 119.93623 * 21 20 19 23 23 C 1.34474 * 108.69949 * 179.97438 * 22 21 20 24 24 C 1.34332 * 107.67015 * 359.97438 * 23 22 21 25 25 O 1.33966 * 125.62287 * 299.62546 * 21 20 19 26 26 C 1.53031 * 109.54041 * 61.23405 * 20 19 18 27 27 C 1.46924 * 120.63450 * 89.99741 * 17 14 12 28 28 H 1.08998 * 109.46636 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46705 * 299.99354 * 1 2 3 30 30 H 1.08996 * 109.47197 * 60.00061 * 1 2 3 31 31 H 0.97007 * 120.00492 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47297 * 269.72722 * 13 12 2 33 33 H 1.09002 * 109.47192 * 29.72648 * 13 12 2 34 34 H 1.08996 * 109.47342 * 149.72358 * 13 12 2 35 35 H 1.08993 * 109.58979 * 353.42175 * 18 17 14 36 36 H 1.09003 * 109.58350 * 113.84525 * 18 17 14 37 37 H 1.08997 * 109.56663 * 185.55527 * 19 18 17 38 38 H 1.09003 * 109.38202 * 65.51987 * 19 18 17 39 39 H 1.09005 * 109.45586 * 301.21370 * 20 19 18 40 40 H 1.07998 * 126.16701 * 180.02562 * 23 22 21 41 41 H 1.08003 * 126.44643 * 180.02562 * 24 23 22 42 42 H 1.09007 * 109.49816 * 178.68532 * 26 20 19 43 43 H 1.08998 * 109.49851 * 58.59060 * 26 20 19 44 44 H 1.08999 * 109.58888 * 246.15891 * 27 17 14 45 45 H 1.09004 * 109.58618 * 6.43647 * 27 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3213 -1.1202 -4.0081 9 1 1.3426 -2.1615 -4.4120 10 1 2.4864 -0.1412 -5.1123 11 1 3.6292 -1.7582 -3.7124 12 7 2.0184 -0.6907 1.1961 13 6 1.6695 -2.0949 1.4248 14 16 2.9706 0.1142 2.2861 15 8 3.7120 -0.8789 2.9813 16 8 3.5794 1.1829 1.5747 17 7 1.9609 0.8089 3.3998 18 6 1.4423 2.1683 3.1947 19 6 1.7577 3.0125 4.4281 20 6 1.2128 2.3129 5.6754 21 6 1.4962 3.1593 6.8897 22 7 0.6002 3.6528 7.6963 23 6 1.2260 4.3500 8.6610 24 6 2.5467 4.2737 8.4279 25 8 2.7112 3.5234 7.3207 26 6 1.8899 0.9498 5.8348 27 6 1.5714 0.0801 4.6146 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8900 31 1 0.7094 1.1620 -3.4843 32 1 0.7442 -2.1507 1.9982 33 1 1.5339 -2.5964 0.4666 34 1 2.4708 -2.5826 1.9799 35 1 1.9161 2.6118 2.3191 36 1 0.3629 2.1293 3.0483 37 1 1.2922 3.9929 4.3282 38 1 2.8376 3.1301 4.5195 39 1 0.1365 2.1739 5.5728 40 1 0.7522 4.8758 9.4767 41 1 3.3297 4.7254 9.0189 42 1 1.5184 0.4622 6.7362 43 1 2.9685 1.0863 5.9128 44 1 0.5027 -0.1326 4.5864 45 1 2.1285 -0.8549 4.6742 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601495914.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:15 Heat of formation + Delta-G solvation = -74.674300 kcal Electronic energy + Delta-G solvation = -29311.407584 eV Core-core repulsion = 25263.556497 eV Total energy + Delta-G solvation = -4047.851087 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.29129 -39.62011 -38.38585 -37.84040 -36.86819 -35.72703 -34.50185 -34.39501 -32.17443 -30.87642 -30.41289 -27.20835 -26.97841 -26.08995 -24.42507 -23.57672 -22.70445 -22.42084 -21.31508 -19.75859 -19.02106 -18.55167 -18.26017 -18.05193 -17.56212 -17.15890 -16.58487 -16.01947 -15.80846 -15.74985 -15.48399 -15.14905 -14.91205 -14.79912 -14.56102 -14.22487 -14.01960 -13.77169 -13.60334 -13.42777 -13.29055 -13.12159 -12.99315 -12.99135 -12.68112 -12.59894 -12.42679 -12.39843 -12.23785 -12.20727 -12.10586 -11.90091 -11.78417 -11.61464 -11.54778 -11.13930 -10.48630 -10.05860 -9.81021 -9.60593 -8.10377 -6.23355 -0.35152 0.52036 1.42401 1.44778 1.53782 1.72577 1.85654 2.03908 2.43214 2.57594 2.99452 3.17976 3.35475 3.59768 3.77485 3.93496 4.08077 4.10079 4.17851 4.23706 4.30714 4.35913 4.54790 4.70046 4.73712 4.75900 4.79473 4.81581 4.86541 4.89853 4.98502 5.03688 5.05026 5.07710 5.16177 5.20444 5.28061 5.30165 5.36705 5.57588 5.63564 5.83110 5.92142 6.18416 6.33254 6.77502 6.84075 7.45272 8.93524 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.024774 B = 0.002883 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.960066 B = 9711.324521 C =10038.887641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.274 3.726 3 H 0.025 0.975 4 C -0.540 4.540 5 H 0.055 0.945 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.952 3.048 9 H -0.269 1.269 10 H -0.284 1.284 11 H -0.276 1.276 12 N -0.997 5.997 13 C 0.092 3.908 14 S 2.789 3.211 15 O -1.006 7.006 16 O -1.014 7.014 17 N -1.004 6.004 18 C 0.119 3.881 19 C -0.120 4.120 20 C 0.016 3.984 21 C 0.190 3.810 22 N -0.510 5.510 23 C -0.064 4.064 24 C -0.073 4.073 25 O -0.216 6.216 26 C -0.121 4.121 27 C 0.117 3.883 28 H 0.039 0.961 29 H 0.038 0.962 30 H 0.065 0.935 31 H 0.264 0.736 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.062 0.938 39 H 0.129 0.871 40 H 0.208 0.792 41 H 0.252 0.748 42 H 0.100 0.900 43 H 0.062 0.938 44 H 0.100 0.900 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.421 3.445 21.512 21.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.170 3.830 3 H 0.043 0.957 4 C -0.579 4.579 5 H 0.073 0.927 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.778 3.222 9 H -0.195 1.195 10 H -0.210 1.210 11 H -0.201 1.201 12 N -0.839 5.839 13 C -0.053 4.053 14 S 2.801 3.199 15 O -0.990 6.990 16 O -0.998 6.998 17 N -0.845 5.845 18 C -0.006 4.006 19 C -0.160 4.160 20 C -0.003 4.003 21 C -0.017 4.017 22 N -0.240 5.240 23 C -0.202 4.202 24 C -0.143 4.143 25 O -0.102 6.102 26 C -0.161 4.161 27 C -0.007 4.007 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.081 0.919 39 H 0.147 0.853 40 H 0.225 0.775 41 H 0.268 0.732 42 H 0.118 0.882 43 H 0.081 0.919 44 H 0.118 0.882 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.148 3.486 21.270 21.660 hybrid contribution 0.842 0.038 -0.905 1.236 sum -1.306 3.524 20.365 20.709 Atomic orbital electron populations 1.21890 0.96676 1.00130 1.00515 1.18380 0.92308 0.91297 0.81014 0.95674 1.21669 1.31602 1.13026 0.91624 0.92685 1.25595 0.95255 0.95709 1.01520 1.69965 1.37279 1.23545 1.24306 0.85647 0.78755 0.78495 0.79275 1.19470 1.20951 1.20106 1.57618 1.70035 1.20985 1.35228 1.21462 1.00648 0.80616 1.02596 1.01400 0.73877 0.72333 0.72337 1.93483 1.69995 1.60930 1.74627 1.93528 1.75423 1.57261 1.73603 1.58088 1.67354 1.24771 1.34309 1.21403 1.00952 0.80149 0.98072 1.21832 1.01865 0.99422 0.92883 1.19768 1.03446 0.91694 0.85411 1.26525 0.77151 0.99387 0.98644 1.70471 1.34527 1.13418 1.05569 1.23882 0.91962 1.03303 1.01026 1.25874 1.00784 0.98510 0.89091 1.84478 1.34992 1.53502 1.37215 1.21927 1.01092 0.93929 0.99105 1.21635 1.02763 0.94638 0.81691 0.94184 0.94278 0.91666 0.92651 0.91162 0.91210 0.91131 0.90454 0.88744 0.88806 0.91925 0.85269 0.77512 0.73175 0.88153 0.91897 0.88207 0.88716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.76 8.98 71.99 0.65 -5.11 16 2 C 0.27 13.20 2.62 44.25 0.12 13.32 16 3 H 0.03 1.38 6.91 -2.39 -0.02 1.36 16 4 C -0.54 -29.00 7.98 25.60 0.20 -28.79 16 5 H 0.05 2.95 7.32 -2.91 -0.02 2.93 16 6 C 0.02 1.04 5.30 84.65 0.45 1.49 16 7 N -0.91 -50.64 11.32 21.45 0.24 -50.40 16 8 Si 0.95 43.10 29.54 68.60 2.03 45.12 16 9 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 N -1.00 -40.05 3.12 -520.48 -1.62 -41.67 16 13 C 0.09 3.07 9.66 127.77 1.23 4.31 16 14 S 2.79 107.10 6.15 -56.49 -0.35 106.75 16 15 O -1.01 -39.97 15.33 -128.00 -1.96 -41.93 16 16 O -1.01 -47.60 15.28 -128.00 -1.96 -49.56 16 17 N -1.00 -27.94 3.35 -513.84 -1.72 -29.66 16 18 C 0.12 3.03 6.45 86.22 0.56 3.59 16 19 C -0.12 -2.57 5.33 30.53 0.16 -2.41 16 20 C 0.02 0.31 2.62 -11.52 -0.03 0.28 16 21 C 0.19 4.08 6.85 88.34 0.61 4.69 16 22 N -0.51 -11.48 11.29 -303.82 -3.43 -14.91 16 23 C -0.06 -1.06 11.89 83.40 0.99 -0.07 16 24 C -0.07 -1.06 12.18 66.93 0.81 -0.24 16 25 O -0.22 -4.55 10.78 -3.70 -0.04 -4.59 16 26 C -0.12 -2.22 5.34 30.67 0.16 -2.06 16 27 C 0.12 2.40 6.48 86.36 0.56 2.96 16 28 H 0.04 1.63 7.68 -2.39 -0.02 1.62 16 29 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.06 3.21 6.07 -2.39 -0.01 3.20 16 31 H 0.26 13.97 8.31 -92.70 -0.77 13.19 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.07 2.50 7.00 -2.39 -0.02 2.49 16 34 H 0.07 2.20 7.02 -2.39 -0.02 2.19 16 35 H 0.08 2.37 6.91 -2.39 -0.02 2.35 16 36 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.13 2.11 8.14 -2.38 -0.02 2.09 16 40 H 0.21 2.03 8.06 -2.91 -0.02 2.01 16 41 H 0.25 1.22 8.06 -2.91 -0.02 1.19 16 42 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 43 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.09 2.01 6.92 -2.38 -0.02 2.00 16 Total: -1.00 -72.90 372.67 -1.35 -74.25 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.99 Total: 14.64 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: 6.47 Total: -8.06 kcal Atomic # 7 Polarization: -130.10 SS G_CDS: -6.54 Total: -136.64 kcal Atomic # 8 Polarization: -92.11 SS G_CDS: -3.96 Total: -96.07 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 107.10 SS G_CDS: -0.35 Total: 106.75 kcal Total: -72.90 -1.35 -74.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601495914.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.424 kcal (2) G-P(sol) polarization free energy of solvation -72.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds