Wall clock time and date at job start Wed Apr 1 2020 02:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.40059 * 125.86760 * 2 1 4 4 C 1.30228 * 109.72085 * 180.02562 * 3 2 1 5 5 C 1.41228 * 108.47095 * 0.02562 * 4 3 2 6 6 C 1.36318 * 125.86601 * 180.02562 * 2 1 3 7 7 N 1.33142 * 134.64554 * 359.96956 * 6 2 1 8 8 C 1.31496 * 120.63697 * 180.02562 * 7 6 2 9 9 C 1.50694 * 118.68891 * 180.02562 * 8 7 6 10 10 N 1.46898 * 109.47436 * 89.99815 * 9 8 7 11 11 C 1.46896 * 111.00040 * 66.04402 * 10 9 8 12 12 C 1.50704 * 109.47189 * 63.42311 * 11 10 9 13 13 H 1.08001 * 119.99543 * 4.59120 * 12 11 10 14 14 C 1.37872 * 120.00366 * 184.59256 * 12 11 10 15 15 N 1.31515 * 119.99822 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00443 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47104 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47390 * 120.00162 * 16 14 12 19 19 H 1.48499 * 109.47287 * 240.00527 * 16 14 12 20 20 C 1.46898 * 110.99902 * 190.00099 * 10 9 8 21 21 C 1.50706 * 109.47070 * 163.66666 * 20 10 9 22 22 C 1.34511 * 125.79113 * 93.65016 * 21 20 10 23 23 C 1.41377 * 106.84229 * 179.89091 * 22 21 20 24 24 C 1.34520 * 106.83855 * 0.36935 * 23 22 21 25 25 O 1.34301 * 125.78393 * 273.95726 * 21 20 10 26 26 N 1.32163 * 122.61945 * 0.27415 * 8 7 6 27 27 C 1.32662 * 121.22667 * 359.40131 * 26 8 7 28 28 O 1.35370 * 120.79510 * 180.27392 * 27 26 8 29 29 H 1.08998 * 109.47326 * 269.96119 * 1 2 3 30 30 H 1.09002 * 109.47312 * 29.96220 * 1 2 3 31 31 H 1.09005 * 109.47405 * 149.96073 * 1 2 3 32 32 H 1.07999 * 125.76439 * 179.97438 * 4 3 2 33 33 H 1.08997 * 109.46990 * 329.99295 * 9 8 7 34 34 H 1.09004 * 109.47194 * 210.00161 * 9 8 7 35 35 H 1.08998 * 109.46967 * 183.41774 * 11 10 9 36 36 H 1.08993 * 109.47462 * 303.42202 * 11 10 9 37 37 H 0.97002 * 120.00399 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.47453 * 283.66244 * 20 10 9 39 39 H 1.08999 * 109.47340 * 43.66830 * 20 10 9 40 40 H 1.08005 * 126.57763 * 0.02562 * 22 21 20 41 41 H 1.07995 * 126.58092 * 180.16569 * 23 22 21 42 42 H 1.08003 * 125.78646 * 179.74792 * 24 23 22 43 43 H 0.96701 * 114.00456 * 270.34803 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2855 1.1350 0.0000 4 6 3.5365 0.7728 -0.0005 5 6 3.5937 -0.6383 -0.0015 6 6 2.2636 -1.1047 -0.0005 7 7 2.0441 -2.4179 -0.0006 8 6 3.0496 -3.2653 -0.0006 9 6 2.7508 -4.7424 -0.0013 10 7 2.6540 -5.2218 -1.3865 11 6 3.9519 -5.1275 -2.0680 12 6 4.9447 -6.0329 -1.3856 13 1 4.6240 -6.6748 -0.5784 14 6 6.2623 -6.0417 -1.7915 15 7 6.6528 -5.2595 -2.7740 16 14 7.4930 -7.1633 -0.9451 17 1 6.8066 -7.9362 0.1212 18 1 8.0738 -8.1009 -1.9395 19 1 8.5768 -6.3451 -0.3443 20 6 2.1333 -6.5946 -1.4332 21 6 1.6719 -6.9095 -2.8329 22 6 2.4072 -7.5065 -3.7880 23 6 1.5862 -7.6061 -4.9347 24 6 0.4009 -7.0565 -4.6142 25 8 0.4587 -6.6363 -3.3399 26 7 4.3117 -2.8733 0.0047 27 6 4.6321 -1.5860 -0.0013 28 8 5.9278 -1.1942 -0.0013 29 1 -0.3634 -0.0007 1.0276 30 1 -0.3634 0.8903 -0.5132 31 1 -0.3634 -0.8897 -0.5145 32 1 4.3865 1.4391 -0.0011 33 1 1.8064 -4.9222 0.5123 34 1 3.5509 -5.2752 0.5126 35 1 3.8387 -5.4314 -3.1087 36 1 4.3101 -4.0989 -2.0268 37 1 7.5799 -5.2654 -3.0594 38 1 2.9201 -7.2917 -1.1447 39 1 1.2940 -6.6885 -0.7442 40 1 3.4281 -7.8467 -3.6958 41 1 1.8594 -8.0374 -5.8863 42 1 -0.4522 -6.9679 -5.2706 43 1 6.3046 -1.0810 0.8821 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610485300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:33:37 Heat of formation + Delta-G solvation = 121.878282 kcal Electronic energy + Delta-G solvation = -30045.108364 eV Core-core repulsion = 25902.629236 eV Total energy + Delta-G solvation = -4142.479127 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.95322 -41.90776 -39.18780 -37.65905 -36.50303 -33.61449 -32.43719 -32.39107 -32.21872 -31.02428 -29.51128 -27.45317 -27.00564 -26.30145 -24.22360 -23.64399 -22.52704 -21.15539 -21.06963 -20.49628 -19.55427 -18.42537 -18.28083 -17.14352 -16.84942 -16.22494 -16.16751 -15.62938 -15.46989 -14.95136 -14.61815 -14.45767 -14.23426 -14.14490 -13.75215 -13.24617 -13.21071 -12.74916 -12.49009 -12.32517 -12.22948 -12.21372 -12.03114 -11.81202 -11.44710 -11.20720 -11.01681 -10.84325 -10.74462 -10.63804 -10.39476 -10.20418 -9.97902 -9.62633 -9.29510 -9.01685 -8.88518 -8.59086 -8.32054 -7.90214 -7.31914 -5.93556 -4.00718 0.63980 1.46400 2.07836 2.29572 2.41808 3.21516 3.31767 3.40168 3.41191 3.55108 3.59172 3.90121 4.09743 4.21443 4.47441 4.74912 4.83974 5.03503 5.12333 5.14898 5.29426 5.34349 5.39647 5.41015 5.45783 5.60269 5.69696 5.82351 5.90164 6.16774 6.21804 6.34615 6.39549 6.42127 6.62700 6.68569 6.70317 7.10795 7.16957 7.27497 7.36987 7.58135 7.61098 7.73700 7.91514 7.99015 8.13037 8.30861 8.50150 9.04042 9.64312 11.13189 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.008657 B = 0.004587 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3233.528049 B = 6102.424997 C = 8590.064961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.387 5.387 3 N -0.254 5.254 4 C 0.109 3.891 5 C -0.310 4.310 6 C 0.354 3.646 7 N -0.532 5.532 8 C 0.420 3.580 9 C 0.126 3.874 10 N -0.534 5.534 11 C 0.182 3.818 12 C -0.540 4.540 13 H 0.056 0.944 14 C 0.074 3.926 15 N -0.883 5.883 16 Si 0.884 3.116 17 H -0.274 1.274 18 H -0.287 1.287 19 H -0.285 1.285 20 C 0.137 3.863 21 C 0.018 3.982 22 C -0.197 4.197 23 C -0.214 4.214 24 C -0.063 4.063 25 O -0.176 6.176 26 N -0.518 5.518 27 C 0.448 3.552 28 O -0.466 6.466 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.199 0.801 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.032 0.968 36 H 0.042 0.958 37 H 0.259 0.741 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.151 0.849 41 H 0.140 0.860 42 H 0.193 0.807 43 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.932 6.444 5.900 13.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.178 5.178 3 N -0.067 5.067 4 C -0.088 4.088 5 C -0.325 4.325 6 C 0.107 3.893 7 N -0.256 5.256 8 C 0.150 3.850 9 C -0.003 4.003 10 N -0.259 5.259 11 C 0.057 3.943 12 C -0.579 4.579 13 H 0.074 0.926 14 C -0.129 4.129 15 N -0.521 5.521 16 Si 0.712 3.288 17 H -0.199 1.199 18 H -0.213 1.213 19 H -0.211 1.211 20 C 0.009 3.991 21 C -0.033 4.033 22 C -0.217 4.217 23 C -0.233 4.233 24 C -0.131 4.131 25 O -0.072 6.072 26 N -0.244 5.244 27 C 0.249 3.751 28 O -0.273 6.273 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.216 0.784 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.169 0.831 41 H 0.158 0.842 42 H 0.210 0.790 43 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -11.650 7.048 5.130 14.550 hybrid contribution 2.480 -0.785 0.747 2.706 sum -9.170 6.263 5.876 12.564 Atomic orbital electron populations 1.21828 0.73104 1.04646 1.03207 1.48178 1.06301 1.00115 1.63222 1.76894 1.02062 1.07333 1.20416 1.23722 0.95069 0.92898 0.97139 1.20366 0.95509 0.96003 1.20620 1.19058 0.87974 0.88477 0.93805 1.67429 1.37419 0.98843 1.21862 1.22837 0.81138 0.96235 0.84838 1.20704 1.01672 0.85273 0.92689 1.62466 1.31351 1.19596 1.12463 1.19932 0.81892 0.98305 0.94167 1.21478 0.94310 1.23600 1.18492 0.92613 1.24822 0.98075 0.95234 0.94760 1.69955 1.16770 1.37944 1.27466 0.86682 0.81850 0.80700 0.79536 1.19915 1.21297 1.21087 1.20393 0.98700 0.92076 0.87930 1.22381 0.82809 1.00745 0.97328 1.21699 1.01297 1.06004 0.92675 1.21787 0.94547 1.06612 1.00350 1.23792 1.00647 1.04111 0.84504 1.83987 1.33999 1.64128 1.25103 1.68165 1.22145 1.16173 1.17874 1.19031 0.83910 0.86253 0.85941 1.84697 1.21440 1.87517 1.33670 0.91058 0.89413 0.88883 0.78393 0.89701 0.90037 0.94951 0.93997 0.93075 0.89601 0.90987 0.83149 0.84246 0.79038 0.73411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.17 11.47 59.84 0.69 1.86 16 2 N -0.39 -5.68 4.05 -67.24 -0.27 -5.95 16 3 N -0.25 -3.57 12.45 30.81 0.38 -3.18 16 4 C 0.11 1.43 12.05 -17.10 -0.21 1.23 16 5 C -0.31 -5.05 6.19 -106.85 -0.66 -5.71 16 6 C 0.35 6.10 8.04 -156.24 -1.26 4.84 16 7 N -0.53 -9.88 10.35 -10.10 -0.10 -9.98 16 8 C 0.42 8.29 6.41 -157.14 -1.01 7.28 16 9 C 0.13 2.39 5.19 -4.98 -0.03 2.36 16 10 N -0.53 -11.25 4.64 -238.97 -1.11 -12.36 16 11 C 0.18 4.61 4.73 -4.98 -0.02 4.59 16 12 C -0.54 -14.00 7.34 -34.44 -0.25 -14.25 16 13 H 0.06 1.40 5.95 -52.49 -0.31 1.08 16 14 C 0.07 2.03 5.46 -17.82 -0.10 1.93 16 15 N -0.88 -25.84 13.29 55.43 0.74 -25.11 16 16 Si 0.88 21.01 29.54 -169.99 -5.02 15.99 16 17 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 20 C 0.14 2.55 5.34 -4.97 -0.03 2.52 16 21 C 0.02 0.35 6.31 -35.62 -0.22 0.12 16 22 C -0.20 -3.81 9.81 -39.71 -0.39 -4.20 16 23 C -0.21 -3.55 10.91 -39.70 -0.43 -3.98 16 24 C -0.06 -0.97 12.09 29.42 0.36 -0.61 16 25 O -0.18 -3.22 10.65 5.71 0.06 -3.16 16 26 N -0.52 -10.68 9.14 -10.53 -0.10 -10.78 16 27 C 0.45 7.95 7.90 -16.31 -0.13 7.82 16 28 O -0.47 -7.07 13.58 -17.80 -0.24 -7.31 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.20 1.76 8.06 -52.49 -0.42 1.34 16 33 H 0.08 1.36 7.86 -51.93 -0.41 0.95 16 34 H 0.08 1.61 6.62 -51.93 -0.34 1.26 16 35 H 0.03 0.91 6.72 -51.93 -0.35 0.56 16 36 H 0.04 1.20 6.36 -51.93 -0.33 0.87 16 37 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.09 1.66 6.12 -51.93 -0.32 1.34 16 39 H 0.07 1.14 7.80 -51.93 -0.41 0.73 16 40 H 0.15 3.07 8.06 -52.48 -0.42 2.65 16 41 H 0.14 1.96 8.06 -52.49 -0.42 1.54 16 42 H 0.19 2.09 8.06 -52.48 -0.42 1.67 16 43 H 0.41 3.62 9.06 45.56 0.41 4.03 16 LS Contribution 369.70 15.07 5.57 5.57 Total: -1.00 -35.35 369.70 -7.93 -43.28 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -4.15 Total: 7.21 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: -3.69 Total: 5.78 kcal Atomic # 7 Polarization: -66.90 SS G_CDS: -0.46 Total: -67.36 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -0.18 Total: -10.47 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.35 -7.93 -43.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610485300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.159 kcal (2) G-P(sol) polarization free energy of solvation -35.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds