Wall clock time and date at job start Wed Apr 1 2020 02:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.47296 * 2 1 4 4 C 1.46498 * 119.99795 * 274.42912 * 3 2 1 5 5 C 1.50698 * 109.47392 * 262.32338 * 4 3 2 6 6 H 1.07996 * 119.99623 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99748 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99657 * 179.97438 * 7 5 4 9 9 Si 1.86793 * 120.00100 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47178 * 90.00321 * 9 7 5 11 11 H 1.48507 * 109.46885 * 210.00097 * 9 7 5 12 12 H 1.48495 * 109.47316 * 329.99701 * 9 7 5 13 13 C 1.34780 * 119.99751 * 94.43227 * 3 2 1 14 14 O 1.21355 * 119.99866 * 1.52894 * 13 3 2 15 15 C 1.49336 * 119.99774 * 181.53363 * 13 3 2 16 16 O 1.21391 * 120.00109 * 355.83160 * 15 13 3 17 17 N 1.34776 * 120.00345 * 175.83835 * 15 13 3 18 18 C 1.39741 * 120.00102 * 185.91161 * 17 15 13 19 19 C 1.38819 * 120.10786 * 31.62105 * 18 17 15 20 20 C 1.38139 * 119.98448 * 179.97438 * 19 18 17 21 21 C 1.38342 * 120.20637 * 0.02562 * 20 19 18 22 22 C 1.38180 * 120.21679 * 359.97438 * 21 20 19 23 23 C 1.38702 * 120.00311 * 359.97438 * 22 21 20 24 24 N 1.40228 * 120.09592 * 179.97438 * 23 22 21 25 25 C 1.34704 * 126.84093 * 355.29037 * 24 23 22 26 26 N 1.30871 * 108.03347 * 179.83881 * 25 24 23 27 27 C 1.33247 * 109.84433 * 0.43768 * 26 25 24 28 28 N 1.30780 * 108.99419 * 359.72976 * 27 26 25 29 29 H 1.09004 * 109.46878 * 60.00142 * 1 2 3 30 30 H 1.09000 * 109.47170 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46995 * 300.00180 * 1 2 3 32 32 H 1.09007 * 109.47280 * 239.99844 * 2 1 3 33 33 H 1.09000 * 109.46942 * 120.00336 * 2 1 3 34 34 H 1.08998 * 109.47192 * 22.32771 * 4 3 2 35 35 H 1.09011 * 109.46807 * 142.32273 * 4 3 2 36 36 H 0.97002 * 120.00349 * 179.97438 * 8 7 5 37 37 H 0.97007 * 119.99407 * 5.90274 * 17 15 13 38 38 H 1.07995 * 120.00695 * 0.02562 * 19 18 17 39 39 H 1.08003 * 119.89730 * 180.27710 * 20 19 18 40 40 H 1.08004 * 119.89004 * 180.02562 * 21 20 19 41 41 H 1.07995 * 119.99298 * 179.97438 * 22 21 20 42 42 H 1.07997 * 125.98550 * 0.02562 * 25 24 23 43 43 H 1.07998 * 125.50769 * 179.72729 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1702 2.1044 -1.2650 5 6 3.6075 2.0370 -1.7129 6 1 4.3350 1.5079 -1.1153 7 6 3.9936 2.6507 -2.8856 8 7 5.2480 2.5923 -3.2762 9 14 2.7353 3.5664 -3.9188 10 1 2.6779 4.9858 -3.4859 11 1 3.1275 3.5007 -5.3496 12 1 1.4002 2.9406 -3.7423 13 6 2.3281 1.9865 1.1638 14 8 2.2288 1.3782 2.2092 15 6 2.7932 3.4055 1.1667 16 8 2.9650 3.9901 0.1168 17 7 3.0225 4.0372 2.3350 18 6 3.3377 5.3986 2.3431 19 6 2.8151 6.2402 1.3706 20 6 3.1279 7.5856 1.3814 21 6 3.9618 8.0985 2.3588 22 6 4.4868 7.2684 3.3308 23 6 4.1777 5.9163 3.3290 24 7 4.7097 5.0721 4.3142 25 6 5.5993 5.4055 5.2692 26 7 5.8385 4.3397 5.9900 27 6 5.1325 3.3104 5.5236 28 7 4.4258 3.7089 4.4979 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.5318 1.6496 -2.0224 35 1 1.8818 3.1463 -1.1247 36 1 5.5197 3.0237 -4.1015 37 1 2.9686 3.5467 3.1702 38 1 2.1634 5.8433 0.6064 39 1 2.7169 8.2399 0.6268 40 1 4.2027 9.1513 2.3626 41 1 5.1377 7.6726 4.0919 42 1 6.0362 6.3821 5.4163 43 1 5.1422 2.3088 5.9273 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615079142.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:47 Heat of formation + Delta-G solvation = 91.276047 kcal Electronic energy + Delta-G solvation = -30362.851097 eV Core-core repulsion = 26219.044957 eV Total energy + Delta-G solvation = -4143.806140 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.50028 -40.67544 -39.34252 -37.80559 -35.87522 -34.59797 -34.07282 -32.60187 -31.53347 -30.72019 -30.15411 -29.26505 -27.70856 -25.18945 -24.27173 -23.43149 -22.69717 -21.86613 -21.60936 -20.89899 -19.22301 -18.47183 -17.46243 -17.06984 -16.92694 -16.10481 -16.07928 -15.81395 -15.29250 -15.09253 -14.96910 -14.67092 -14.25915 -14.10499 -14.01651 -13.66760 -13.54729 -13.19238 -12.98949 -12.51616 -12.37991 -12.22300 -12.15343 -11.87164 -11.78228 -11.61004 -11.04417 -10.98746 -10.77733 -10.67189 -10.45080 -10.29993 -10.26050 -10.19545 -10.05263 -9.53237 -8.87691 -8.69180 -8.50962 -8.02876 -7.87556 -6.07321 -4.05034 0.55490 1.09103 1.85397 2.01536 2.07296 2.74796 2.76693 3.29163 3.33993 3.35796 3.53122 3.86107 3.96298 4.06653 4.19434 4.40697 4.63230 4.71416 4.82067 4.90378 5.15578 5.24410 5.26279 5.30636 5.43431 5.57938 5.58357 5.69307 5.88675 6.05413 6.08049 6.13826 6.17512 6.18360 6.33109 6.41838 6.44421 6.46092 6.59325 6.83649 6.97954 7.13538 7.49750 7.56848 7.82038 7.88728 8.21270 8.44944 8.59539 8.93766 9.52655 11.06225 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010380 B = 0.004333 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.771826 B = 6460.829923 C = 7892.131877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.109 3.891 3 N -0.555 5.555 4 C 0.196 3.804 5 C -0.517 4.517 6 H 0.071 0.929 7 C 0.079 3.921 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.267 1.267 13 C 0.512 3.488 14 O -0.549 6.549 15 C 0.495 3.505 16 O -0.445 6.445 17 N -0.650 5.650 18 C 0.178 3.822 19 C -0.108 4.108 20 C -0.093 4.093 21 C -0.119 4.119 22 C -0.111 4.111 23 C 0.104 3.896 24 N -0.320 5.320 25 C 0.258 3.742 26 N -0.538 5.538 27 C 0.213 3.787 28 N -0.319 5.319 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.030 0.970 35 H 0.060 0.940 36 H 0.264 0.736 37 H 0.429 0.571 38 H 0.149 0.851 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.222 0.778 43 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.464 8.971 13.817 17.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.014 4.014 3 N -0.285 5.285 4 C 0.075 3.925 5 C -0.556 4.556 6 H 0.089 0.911 7 C -0.123 4.123 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.192 1.192 13 C 0.294 3.706 14 O -0.429 6.429 15 C 0.277 3.723 16 O -0.313 6.313 17 N -0.303 5.303 18 C 0.079 3.921 19 C -0.129 4.129 20 C -0.112 4.112 21 C -0.139 4.139 22 C -0.132 4.132 23 C 0.009 3.991 24 N -0.103 5.103 25 C -0.037 4.037 26 N -0.265 5.265 27 C -0.089 4.089 28 N -0.146 5.146 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.275 0.725 38 H 0.166 0.834 39 H 0.152 0.848 40 H 0.153 0.847 41 H 0.152 0.848 42 H 0.238 0.762 43 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -5.584 8.490 13.263 16.708 hybrid contribution -0.213 0.424 -0.440 0.647 sum -5.797 8.914 12.823 16.658 Atomic orbital electron populations 1.22125 0.96197 1.01814 1.02113 1.21477 0.93761 0.82552 1.03610 1.47934 1.59733 1.13524 1.07353 1.20377 0.98782 0.93460 0.79847 1.21109 0.92307 1.34662 1.07474 0.91107 1.24743 0.95028 0.95337 0.97204 1.69897 1.15976 1.44393 1.23353 0.86858 0.82040 0.81274 0.79502 1.19782 1.21346 1.19199 1.19597 0.79507 0.86983 0.84492 1.90672 1.54759 1.66003 1.31453 1.20468 0.79511 0.88678 0.83638 1.90875 1.44147 1.66670 1.29652 1.43745 1.67687 1.07252 1.11636 1.17450 0.94992 0.84393 0.95291 1.21267 1.00296 0.92686 0.98646 1.21182 0.97238 0.94706 0.98079 1.20912 0.98559 0.99839 0.94586 1.20578 1.01954 0.89649 1.00987 1.17400 1.00030 0.89490 0.92174 1.47677 1.32121 1.07346 1.23188 1.26133 0.90868 1.00515 0.86151 1.70635 1.27307 0.98768 1.29746 1.26158 0.91703 1.00042 0.90998 1.77669 1.26235 0.89221 1.21457 0.92402 0.91748 0.92702 0.89707 0.90049 0.95173 0.92220 0.92657 0.72531 0.83370 0.84790 0.84719 0.84809 0.76158 0.75970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 10.24 37.16 0.38 -1.97 16 2 C 0.11 1.90 6.15 -4.04 -0.02 1.87 16 3 N -0.56 -11.71 2.48 -175.61 -0.44 -12.15 16 4 C 0.20 4.59 3.86 -5.20 -0.02 4.57 16 5 C -0.52 -14.50 8.64 -34.44 -0.30 -14.79 16 6 H 0.07 2.23 8.06 -52.49 -0.42 1.81 16 7 C 0.08 2.27 5.47 -17.82 -0.10 2.18 16 8 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 9 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 13 C 0.51 10.95 7.66 -11.64 -0.09 10.86 16 14 O -0.55 -11.80 15.99 5.49 0.09 -11.71 16 15 C 0.49 10.38 7.48 -11.64 -0.09 10.30 16 16 O -0.44 -10.28 9.86 5.46 0.05 -10.22 16 17 N -0.65 -11.85 4.84 -10.19 -0.05 -11.90 16 18 C 0.18 2.87 6.32 -83.57 -0.53 2.34 16 19 C -0.11 -1.62 8.66 -39.40 -0.34 -1.96 16 20 C -0.09 -1.06 10.04 -39.58 -0.40 -1.46 16 21 C -0.12 -1.11 10.04 -39.56 -0.40 -1.51 16 22 C -0.11 -1.09 9.47 -39.43 -0.37 -1.46 16 23 C 0.10 1.42 6.71 -83.38 -0.56 0.86 16 24 N -0.32 -4.36 3.82 -11.67 -0.04 -4.41 16 25 C 0.26 2.82 11.98 -90.37 -1.08 1.74 16 26 N -0.54 -6.79 11.19 -15.74 -0.18 -6.96 16 27 C 0.21 2.75 13.03 -91.75 -1.20 1.55 16 28 N -0.32 -4.88 9.42 29.30 0.28 -4.61 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 1.45 8.11 -51.93 -0.42 1.03 16 33 H 0.08 1.41 7.27 -51.93 -0.38 1.03 16 34 H 0.03 0.68 7.07 -51.93 -0.37 0.32 16 35 H 0.06 1.43 5.00 -51.92 -0.26 1.17 16 36 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 37 H 0.43 7.71 5.48 -40.82 -0.22 7.49 16 38 H 0.15 2.43 6.31 -52.49 -0.33 2.09 16 39 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 40 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 41 H 0.13 0.81 6.83 -52.49 -0.36 0.46 16 42 H 0.22 1.29 7.13 -52.49 -0.37 0.92 16 43 H 0.22 2.08 8.06 -52.49 -0.42 1.65 16 LS Contribution 363.68 15.07 5.48 5.48 Total: -1.00 -35.77 363.68 -8.65 -44.42 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -4.84 Total: 9.14 kcal Atomic # 6 Polarization: 18.23 SS G_CDS: -5.11 Total: 13.12 kcal Atomic # 7 Polarization: -67.15 SS G_CDS: 0.34 Total: -66.81 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: 0.14 Total: -21.93 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.77 -8.65 -44.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615079142.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.698 kcal (2) G-P(sol) polarization free energy of solvation -35.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds