Wall clock time and date at job start Wed Apr 1 2020 02:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.47296 * 2 1 4 4 C 1.46498 * 119.99795 * 274.42912 * 3 2 1 5 5 C 1.50698 * 109.47392 * 262.32338 * 4 3 2 6 6 H 1.07996 * 119.99623 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99748 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99657 * 179.97438 * 7 5 4 9 9 Si 1.86793 * 120.00100 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47178 * 90.00321 * 9 7 5 11 11 H 1.48507 * 109.46885 * 210.00097 * 9 7 5 12 12 H 1.48495 * 109.47316 * 329.99701 * 9 7 5 13 13 C 1.34780 * 119.99751 * 94.43227 * 3 2 1 14 14 O 1.21355 * 119.99866 * 1.52894 * 13 3 2 15 15 C 1.49336 * 119.99774 * 181.53363 * 13 3 2 16 16 O 1.21391 * 120.00109 * 355.83160 * 15 13 3 17 17 N 1.34776 * 120.00345 * 175.83835 * 15 13 3 18 18 C 1.39741 * 120.00102 * 185.91161 * 17 15 13 19 19 C 1.38819 * 120.10786 * 31.62105 * 18 17 15 20 20 C 1.38139 * 119.98448 * 179.97438 * 19 18 17 21 21 C 1.38342 * 120.20637 * 0.02562 * 20 19 18 22 22 C 1.38180 * 120.21679 * 359.97438 * 21 20 19 23 23 C 1.38702 * 120.00311 * 359.97438 * 22 21 20 24 24 N 1.40228 * 120.09592 * 179.97438 * 23 22 21 25 25 C 1.34704 * 126.84093 * 355.29037 * 24 23 22 26 26 N 1.30871 * 108.03347 * 179.83881 * 25 24 23 27 27 C 1.33247 * 109.84433 * 0.43768 * 26 25 24 28 28 N 1.30780 * 108.99419 * 359.72976 * 27 26 25 29 29 H 1.09004 * 109.46878 * 60.00142 * 1 2 3 30 30 H 1.09000 * 109.47170 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46995 * 300.00180 * 1 2 3 32 32 H 1.09007 * 109.47280 * 239.99844 * 2 1 3 33 33 H 1.09000 * 109.46942 * 120.00336 * 2 1 3 34 34 H 1.08998 * 109.47192 * 22.32771 * 4 3 2 35 35 H 1.09011 * 109.46807 * 142.32273 * 4 3 2 36 36 H 0.97002 * 120.00349 * 179.97438 * 8 7 5 37 37 H 0.97007 * 119.99407 * 5.90274 * 17 15 13 38 38 H 1.07995 * 120.00695 * 0.02562 * 19 18 17 39 39 H 1.08003 * 119.89730 * 180.27710 * 20 19 18 40 40 H 1.08004 * 119.89004 * 180.02562 * 21 20 19 41 41 H 1.07995 * 119.99298 * 179.97438 * 22 21 20 42 42 H 1.07997 * 125.98550 * 0.02562 * 25 24 23 43 43 H 1.07998 * 125.50769 * 179.72729 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1702 2.1044 -1.2650 5 6 3.6075 2.0370 -1.7129 6 1 4.3350 1.5079 -1.1153 7 6 3.9936 2.6507 -2.8856 8 7 5.2480 2.5923 -3.2762 9 14 2.7353 3.5664 -3.9188 10 1 2.6779 4.9858 -3.4859 11 1 3.1275 3.5007 -5.3496 12 1 1.4002 2.9406 -3.7423 13 6 2.3281 1.9865 1.1638 14 8 2.2288 1.3782 2.2092 15 6 2.7932 3.4055 1.1667 16 8 2.9650 3.9901 0.1168 17 7 3.0225 4.0372 2.3350 18 6 3.3377 5.3986 2.3431 19 6 2.8151 6.2402 1.3706 20 6 3.1279 7.5856 1.3814 21 6 3.9618 8.0985 2.3588 22 6 4.4868 7.2684 3.3308 23 6 4.1777 5.9163 3.3290 24 7 4.7097 5.0721 4.3142 25 6 5.5993 5.4055 5.2692 26 7 5.8385 4.3397 5.9900 27 6 5.1325 3.3104 5.5236 28 7 4.4258 3.7089 4.4979 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.5318 1.6496 -2.0224 35 1 1.8818 3.1463 -1.1247 36 1 5.5197 3.0237 -4.1015 37 1 2.9686 3.5467 3.1702 38 1 2.1634 5.8433 0.6064 39 1 2.7169 8.2399 0.6268 40 1 4.2027 9.1513 2.3626 41 1 5.1377 7.6726 4.0919 42 1 6.0362 6.3821 5.4163 43 1 5.1422 2.3088 5.9273 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615079142.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:46 Heat of formation + Delta-G solvation = 68.650457 kcal Electronic energy + Delta-G solvation = -30363.832217 eV Core-core repulsion = 26219.044957 eV Total energy + Delta-G solvation = -4144.787259 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.45586 -42.13189 -40.61288 -39.23985 -37.51169 -35.84428 -35.14957 -34.70038 -32.51188 -32.26310 -31.15971 -30.29992 -29.63084 -26.60387 -25.18848 -24.66282 -24.55891 -23.10910 -22.56655 -22.02718 -20.72616 -19.46069 -19.18315 -18.80629 -18.42356 -17.60724 -17.20369 -16.94797 -16.78552 -16.42791 -16.09337 -15.97802 -15.63217 -15.51309 -15.12273 -14.92282 -14.77129 -14.72906 -14.41746 -14.12612 -13.94338 -13.58309 -13.31642 -13.25959 -12.90608 -12.76922 -12.64475 -12.51362 -12.20257 -12.09060 -11.95786 -11.90232 -11.70363 -11.51387 -11.26502 -11.05658 -10.79121 -10.34822 -9.71862 -9.68441 -9.07384 -8.28496 -6.31531 -0.40740 0.03326 0.56696 0.93724 1.10540 1.29942 1.37146 1.40425 1.47180 1.82419 2.11581 2.35874 2.47910 2.70811 3.08697 3.21906 3.27832 3.35491 3.80251 3.88950 4.08501 4.11010 4.25037 4.28334 4.34262 4.37014 4.43904 4.63338 4.66142 4.85061 4.86287 4.94871 4.98219 5.11986 5.23724 5.24223 5.27068 5.36073 5.41203 5.45265 5.50543 5.66769 5.93623 6.02401 6.10714 6.33495 6.64998 6.68964 6.88374 6.95671 7.30480 8.89121 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010380 B = 0.004333 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.771826 B = 6460.829923 C = 7892.131877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.099 3.901 3 N -0.560 5.560 4 C 0.208 3.792 5 C -0.515 4.515 6 H 0.017 0.983 7 C 0.019 3.981 8 N -0.950 5.950 9 Si 0.945 3.055 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.237 1.237 13 C 0.504 3.496 14 O -0.556 6.556 15 C 0.490 3.510 16 O -0.479 6.479 17 N -0.641 5.641 18 C 0.127 3.873 19 C -0.131 4.131 20 C -0.096 4.096 21 C -0.098 4.098 22 C -0.099 4.099 23 C 0.095 3.905 24 N -0.333 5.333 25 C 0.271 3.729 26 N -0.557 5.557 27 C 0.212 3.788 28 N -0.369 5.369 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.048 0.952 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.266 0.734 37 H 0.428 0.572 38 H 0.122 0.878 39 H 0.157 0.843 40 H 0.183 0.817 41 H 0.183 0.817 42 H 0.274 0.726 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.290 11.811 14.680 19.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.022 4.022 3 N -0.291 5.291 4 C 0.087 3.913 5 C -0.553 4.553 6 H 0.035 0.965 7 C -0.178 4.178 8 N -0.591 5.591 9 Si 0.768 3.232 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.160 1.160 13 C 0.286 3.714 14 O -0.436 6.436 15 C 0.272 3.728 16 O -0.351 6.351 17 N -0.294 5.294 18 C 0.030 3.970 19 C -0.152 4.152 20 C -0.115 4.115 21 C -0.117 4.117 22 C -0.119 4.119 23 C 0.000 4.000 24 N -0.117 5.117 25 C -0.022 4.022 26 N -0.283 5.283 27 C -0.090 4.090 28 N -0.196 5.196 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.067 0.933 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.273 0.727 38 H 0.140 0.860 39 H 0.175 0.825 40 H 0.200 0.800 41 H 0.200 0.800 42 H 0.289 0.711 43 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -6.431 11.327 14.177 19.252 hybrid contribution 0.187 -0.395 -0.512 0.673 sum -6.243 10.931 13.666 18.580 Atomic orbital electron populations 1.22045 0.93187 1.03877 1.01950 1.21762 0.96211 0.80656 1.03575 1.48017 1.59807 1.14762 1.06482 1.20095 0.95940 0.94179 0.81097 1.21223 0.93669 1.33600 1.06812 0.96455 1.25689 0.97199 0.96263 0.98694 1.70063 1.18584 1.46166 1.24279 0.85756 0.80406 0.79707 0.77319 1.19583 1.20773 1.15971 1.19865 0.79393 0.87517 0.84591 1.90643 1.55112 1.66341 1.31538 1.20462 0.79591 0.88490 0.84244 1.90833 1.46452 1.67161 1.30641 1.43638 1.66856 1.08482 1.10424 1.17835 0.98019 0.83345 0.97779 1.21244 1.01087 0.94501 0.98320 1.21536 0.97394 0.93247 0.99320 1.21493 0.95852 1.01871 0.92477 1.21205 1.01304 0.87670 1.01748 1.17776 0.99726 0.90941 0.91511 1.47745 1.33075 1.06883 1.23986 1.27188 0.88992 1.01837 0.84203 1.70679 1.27841 0.99264 1.30518 1.26692 0.90847 1.01160 0.90260 1.77589 1.28113 0.90926 1.23003 0.92076 0.88546 0.93265 0.89542 0.90317 0.93285 0.92117 0.92549 0.72705 0.85982 0.82526 0.80017 0.79990 0.71100 0.73855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.15 10.24 71.98 0.74 -3.41 16 2 C 0.10 3.49 6.15 86.38 0.53 4.02 16 3 N -0.56 -24.40 2.48 -827.85 -2.05 -26.46 16 4 C 0.21 9.93 3.86 85.63 0.33 10.26 16 5 C -0.51 -30.11 8.64 25.60 0.22 -29.89 16 6 H 0.02 1.16 8.06 -2.91 -0.02 1.14 16 7 C 0.02 1.12 5.47 84.65 0.46 1.58 16 8 N -0.95 -60.61 13.96 21.45 0.30 -60.31 16 9 Si 0.95 44.06 27.47 68.60 1.88 45.94 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.24 -9.78 6.54 99.48 0.65 -9.13 16 13 C 0.50 22.67 7.66 87.23 0.67 23.34 16 14 O -0.56 -24.99 15.99 -3.26 -0.05 -25.04 16 15 C 0.49 21.91 7.48 87.23 0.65 22.56 16 16 O -0.48 -23.48 9.86 -3.37 -0.03 -23.51 16 17 N -0.64 -24.88 4.84 -304.49 -1.47 -26.35 16 18 C 0.13 4.24 6.32 38.32 0.24 4.48 16 19 C -0.13 -4.03 8.66 22.39 0.19 -3.83 16 20 C -0.10 -2.00 10.04 22.27 0.22 -1.78 16 21 C -0.10 -1.39 10.04 22.28 0.22 -1.17 16 22 C -0.10 -1.54 9.47 22.37 0.21 -1.33 16 23 C 0.10 2.48 6.71 38.21 0.26 2.73 16 24 N -0.33 -8.78 3.82 -190.85 -0.73 -9.51 16 25 C 0.27 5.22 11.98 180.26 2.16 7.38 16 26 N -0.56 -13.24 11.19 -203.72 -2.28 -15.51 16 27 C 0.21 5.48 13.03 180.74 2.35 7.83 16 28 N -0.37 -11.58 9.42 -61.21 -0.58 -12.16 16 29 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.09 2.97 8.11 -2.38 -0.02 2.95 16 33 H 0.08 2.78 7.27 -2.39 -0.02 2.77 16 34 H 0.05 2.16 7.07 -2.39 -0.02 2.15 16 35 H 0.06 2.96 5.00 -2.38 -0.01 2.95 16 36 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 37 H 0.43 16.41 5.48 -92.70 -0.51 15.90 16 38 H 0.12 4.31 6.31 -2.91 -0.02 4.29 16 39 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 40 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 41 H 0.18 1.00 6.83 -2.91 -0.02 0.98 16 42 H 0.27 1.75 7.13 -2.91 -0.02 1.73 16 43 H 0.25 4.62 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -85.29 363.68 4.96 -80.32 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: 0.51 Total: 29.80 kcal Atomic # 6 Polarization: 33.32 SS G_CDS: 9.47 Total: 42.79 kcal Atomic # 7 Polarization: -143.49 SS G_CDS: -6.81 Total: -150.31 kcal Atomic # 8 Polarization: -48.47 SS G_CDS: -0.09 Total: -48.56 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.88 Total: 45.94 kcal Total: -85.29 4.96 -80.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615079142.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.973 kcal (2) G-P(sol) polarization free energy of solvation -85.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds