Wall clock time and date at job start Wed Apr 1 2020 02:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46505 * 109.46901 * 2 1 4 4 C 1.46504 * 119.99879 * 264.99524 * 3 2 1 5 5 C 1.50692 * 109.46981 * 263.14897 * 4 3 2 6 6 H 1.08003 * 120.00422 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00073 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99787 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00370 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47198 * 59.99547 * 9 7 5 11 11 H 1.48495 * 109.47279 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46814 * 299.99779 * 9 7 5 13 13 C 1.34771 * 120.00094 * 84.99834 * 3 2 1 14 14 O 1.21369 * 119.99977 * 4.02331 * 13 3 2 15 15 C 1.49305 * 120.00019 * 184.02831 * 13 3 2 16 16 O 1.21389 * 119.99971 * 354.69813 * 15 13 3 17 17 N 1.34781 * 119.99721 * 174.69538 * 15 13 3 18 18 C 1.39131 * 119.99471 * 180.02562 * 17 15 13 19 19 C 1.36196 * 126.29716 * 0.02562 * 18 17 15 20 20 C 1.39758 * 107.87719 * 179.97438 * 19 18 17 21 21 N 1.30875 * 108.51715 * 359.72421 * 20 19 18 22 22 N 1.36222 * 126.29169 * 180.02562 * 18 17 15 23 23 C 1.39858 * 126.12288 * 0.02562 * 22 18 17 24 24 C 1.39348 * 120.85719 * 145.00524 * 23 22 18 25 25 C 1.37986 * 119.07841 * 180.02562 * 24 23 22 26 26 N 1.31948 * 120.83513 * 0.02562 * 25 24 23 27 27 C 1.31943 * 121.88531 * 359.97284 * 26 25 24 28 28 C 1.37987 * 120.83868 * 0.02562 * 27 26 25 29 29 H 1.08993 * 109.47066 * 59.99725 * 1 2 3 30 30 H 1.09000 * 109.47330 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47056 * 300.00279 * 1 2 3 32 32 H 1.08999 * 109.46714 * 240.00025 * 2 1 3 33 33 H 1.09001 * 109.46961 * 119.99936 * 2 1 3 34 34 H 1.09003 * 109.47161 * 23.14906 * 4 3 2 35 35 H 1.08998 * 109.46761 * 143.14903 * 4 3 2 36 36 H 0.96998 * 119.99782 * 180.02562 * 8 7 5 37 37 H 0.96994 * 120.00332 * 0.02562 * 17 15 13 38 38 H 1.07995 * 126.06040 * 359.97438 * 19 18 17 39 39 H 1.07997 * 125.74224 * 180.02562 * 20 19 18 40 40 H 1.08002 * 120.46041 * 359.97438 * 24 23 22 41 41 H 1.08000 * 119.58197 * 179.97438 * 25 24 23 42 42 H 1.08002 * 119.58019 * 179.97438 * 27 26 25 43 43 H 1.07990 * 120.46377 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3668 2.0350 -1.2639 5 6 3.8531 1.9316 -1.4898 6 1 4.4760 1.4296 -0.7642 7 6 4.4181 2.4788 -2.6222 8 7 3.6597 3.0906 -3.5055 9 14 6.2606 2.3514 -2.9019 10 1 6.6547 0.9208 -2.9598 11 1 6.6138 3.0139 -4.1831 12 1 6.9780 3.0176 -1.7853 13 6 2.1470 2.0505 1.1627 14 8 1.9285 1.4865 2.2149 15 6 2.5583 3.4858 1.1563 16 8 2.8698 4.0233 0.1135 17 7 2.5835 4.1846 2.3086 18 6 2.9663 5.5223 2.3025 19 6 3.3381 6.2495 1.2127 20 6 3.6419 7.5438 1.6439 21 7 3.4576 7.6047 2.9381 22 7 3.0380 6.3453 3.3856 23 6 2.7400 5.9970 4.7070 24 6 3.4569 6.5440 5.7693 25 6 3.1323 6.1742 7.0585 26 7 2.1583 5.3149 7.2906 27 6 1.4568 4.7755 6.3119 28 6 1.7192 5.0933 4.9950 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.8399 1.5460 -2.0833 35 1 2.0779 3.0851 -1.2215 36 1 4.0571 3.4753 -4.3024 37 1 2.3349 3.7551 3.1419 38 1 3.3891 5.8899 0.1957 39 1 3.9687 8.3581 1.0142 40 1 4.2561 7.2470 5.5862 41 1 3.6829 6.5928 7.8879 42 1 0.6677 4.0757 6.5444 43 1 1.1409 4.6486 4.1988 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615080195.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:19:04 Heat of formation + Delta-G solvation = 84.237322 kcal Electronic energy + Delta-G solvation = -29946.372073 eV Core-core repulsion = 25802.260711 eV Total energy + Delta-G solvation = -4144.111362 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.93350 -40.37588 -39.95779 -38.16002 -35.98694 -34.82234 -34.13730 -32.75777 -31.62460 -30.65030 -30.14024 -29.20701 -27.16393 -25.23116 -24.17478 -24.07017 -23.10150 -22.48430 -21.38744 -20.55279 -19.37801 -18.63394 -17.12821 -16.83868 -16.66025 -16.41145 -16.14461 -15.78780 -15.57336 -15.20470 -15.02688 -14.63437 -14.34635 -14.16797 -13.96586 -13.85361 -13.71507 -13.53440 -13.14892 -13.01708 -12.46281 -12.18228 -12.07279 -11.80337 -11.69926 -11.09920 -11.01910 -10.98454 -10.86919 -10.74806 -10.65118 -10.49652 -10.05213 -9.92877 -9.78355 -9.58405 -8.93184 -8.81523 -8.38848 -8.16782 -7.95187 -6.10995 -4.14918 0.51922 0.74444 1.57460 1.80866 2.17372 2.70846 2.87883 3.27993 3.32578 3.35474 3.44005 3.67618 3.82092 4.11650 4.27061 4.37773 4.48117 4.68561 4.73510 4.85131 5.03904 5.25032 5.26150 5.32556 5.41582 5.43030 5.57839 5.58477 5.69282 5.72738 5.93435 6.06623 6.11389 6.17707 6.22460 6.44094 6.56224 6.72667 6.85748 7.11609 7.27842 7.31301 7.59179 7.61072 7.76482 7.95129 8.04837 8.12273 8.44445 8.86287 9.49044 10.97441 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011332 B = 0.003730 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.325519 B = 7503.978921 C = 9178.540230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.111 3.889 3 N -0.552 5.552 4 C 0.219 3.781 5 C -0.525 4.525 6 H 0.054 0.946 7 C 0.072 3.928 8 N -0.887 5.887 9 Si 0.893 3.107 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.513 3.487 14 O -0.558 6.558 15 C 0.496 3.504 16 O -0.414 6.414 17 N -0.640 5.640 18 C 0.320 3.680 19 C -0.266 4.266 20 C 0.081 3.919 21 N -0.291 5.291 22 N -0.354 5.354 23 C 0.213 3.787 24 C -0.170 4.170 25 C 0.123 3.877 26 N -0.492 5.492 27 C 0.132 3.868 28 C -0.204 4.204 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.035 0.965 35 H 0.076 0.924 36 H 0.264 0.736 37 H 0.416 0.584 38 H 0.188 0.812 39 H 0.195 0.805 40 H 0.147 0.853 41 H 0.165 0.835 42 H 0.168 0.832 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.519 4.061 13.711 14.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.012 4.012 3 N -0.282 5.282 4 C 0.100 3.900 5 C -0.564 4.564 6 H 0.072 0.928 7 C -0.131 4.131 8 N -0.525 5.525 9 Si 0.721 3.279 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.295 3.705 14 O -0.440 6.440 15 C 0.278 3.722 16 O -0.279 6.279 17 N -0.292 5.292 18 C 0.104 3.896 19 C -0.297 4.297 20 C -0.106 4.106 21 N -0.110 5.110 22 N -0.137 5.137 23 C 0.112 3.888 24 C -0.192 4.192 25 C -0.034 4.034 26 N -0.202 5.202 27 C -0.025 4.025 28 C -0.227 4.227 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.053 0.947 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.255 0.745 38 H 0.205 0.795 39 H 0.212 0.788 40 H 0.164 0.836 41 H 0.182 0.818 42 H 0.185 0.815 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.572 4.628 15.085 16.428 hybrid contribution 1.208 -0.472 -1.559 2.028 sum -3.363 4.157 13.526 14.544 Atomic orbital electron populations 1.22121 0.96111 1.01827 1.02247 1.21478 0.93874 0.82504 1.03331 1.48324 1.58513 1.13104 1.08278 1.20173 0.96531 0.95427 0.77822 1.21182 0.91985 1.36995 1.06241 0.92781 1.24797 0.97949 0.94657 0.95708 1.69900 1.35360 1.36488 1.10785 0.86637 0.85500 0.78217 0.77533 1.20332 1.21103 1.20229 1.19338 0.80054 0.86261 0.84877 1.90674 1.53054 1.69269 1.30981 1.20546 0.80256 0.88542 0.82904 1.90879 1.39039 1.69158 1.28848 1.42974 1.66486 1.07012 1.12725 1.18230 0.99735 0.83414 0.88172 1.21987 1.14048 0.93207 1.00473 1.24022 0.96681 0.98045 0.91876 1.77577 1.23543 0.96381 1.13489 1.45932 1.56183 1.08383 1.03172 1.17743 0.93828 0.95485 0.81778 1.22041 1.01524 1.03241 0.92403 1.22759 0.93032 0.92401 0.95226 1.67736 1.06615 1.09279 1.36537 1.22694 0.96883 0.96023 0.86944 1.22126 0.98418 1.02226 0.99946 0.92247 0.91819 0.92641 0.89447 0.90643 0.94722 0.90710 0.92636 0.74457 0.79526 0.78800 0.83568 0.81758 0.81487 0.84180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 10.20 37.16 0.38 -1.90 16 2 C 0.11 1.83 6.08 -4.04 -0.02 1.81 16 3 N -0.55 -11.04 2.49 -175.62 -0.44 -11.48 16 4 C 0.22 5.14 4.75 -5.20 -0.02 5.11 16 5 C -0.53 -13.72 8.36 -34.44 -0.29 -14.01 16 6 H 0.05 1.44 7.81 -52.48 -0.41 1.03 16 7 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 8 N -0.89 -24.61 13.29 55.43 0.74 -23.87 16 9 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 C 0.51 10.07 7.63 -11.66 -0.09 9.98 16 14 O -0.56 -10.84 16.12 5.48 0.09 -10.75 16 15 C 0.50 9.54 7.73 -11.65 -0.09 9.45 16 16 O -0.41 -9.07 9.52 5.46 0.05 -9.02 16 17 N -0.64 -10.41 5.04 -11.73 -0.06 -10.47 16 18 C 0.32 5.25 7.43 -152.59 -1.13 4.11 16 19 C -0.27 -4.43 9.65 -39.75 -0.38 -4.82 16 20 C 0.08 1.13 12.00 -17.39 -0.21 0.92 16 21 N -0.29 -4.33 12.36 30.61 0.38 -3.95 16 22 N -0.35 -5.30 3.77 -9.59 -0.04 -5.33 16 23 C 0.21 2.76 6.43 -83.37 -0.54 2.22 16 24 C -0.17 -1.87 9.89 -39.26 -0.39 -2.26 16 25 C 0.12 1.18 11.17 -17.59 -0.20 0.98 16 26 N -0.49 -5.35 10.36 -13.33 -0.14 -5.49 16 27 C 0.13 1.32 11.17 -17.60 -0.20 1.12 16 28 C -0.20 -2.31 8.54 -39.26 -0.34 -2.64 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 1.41 8.03 -51.93 -0.42 0.99 16 33 H 0.08 1.22 7.52 -51.93 -0.39 0.83 16 34 H 0.03 0.84 8.02 -51.93 -0.42 0.42 16 35 H 0.08 1.89 5.37 -51.93 -0.28 1.61 16 36 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.42 6.02 5.59 -40.82 -0.23 5.79 16 38 H 0.19 3.49 5.83 -52.49 -0.31 3.18 16 39 H 0.20 1.95 8.06 -52.49 -0.42 1.53 16 40 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 41 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 43 H 0.14 1.51 6.41 -52.49 -0.34 1.18 16 LS Contribution 369.84 15.07 5.57 5.57 Total: -1.00 -31.19 369.84 -7.35 -38.54 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -4.88 Total: 8.38 kcal Atomic # 6 Polarization: 15.52 SS G_CDS: -3.61 Total: 11.91 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: 0.44 Total: -60.60 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: 0.14 Total: -19.77 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.19 -7.35 -38.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615080195.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.778 kcal (2) G-P(sol) polarization free energy of solvation -31.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds