Wall clock time and date at job start Wed Apr 1 2020 02:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46505 * 109.46901 * 2 1 4 4 C 1.46504 * 119.99879 * 264.99524 * 3 2 1 5 5 C 1.50692 * 109.46981 * 263.14897 * 4 3 2 6 6 H 1.08003 * 120.00422 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00073 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99787 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00370 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47198 * 59.99547 * 9 7 5 11 11 H 1.48495 * 109.47279 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46814 * 299.99779 * 9 7 5 13 13 C 1.34771 * 120.00094 * 84.99834 * 3 2 1 14 14 O 1.21369 * 119.99977 * 4.02331 * 13 3 2 15 15 C 1.49305 * 120.00019 * 184.02831 * 13 3 2 16 16 O 1.21389 * 119.99971 * 354.69813 * 15 13 3 17 17 N 1.34781 * 119.99721 * 174.69538 * 15 13 3 18 18 C 1.39131 * 119.99471 * 180.02562 * 17 15 13 19 19 C 1.36196 * 126.29716 * 0.02562 * 18 17 15 20 20 C 1.39758 * 107.87719 * 179.97438 * 19 18 17 21 21 N 1.30875 * 108.51715 * 359.72421 * 20 19 18 22 22 N 1.36222 * 126.29169 * 180.02562 * 18 17 15 23 23 C 1.39858 * 126.12288 * 0.02562 * 22 18 17 24 24 C 1.39348 * 120.85719 * 145.00524 * 23 22 18 25 25 C 1.37986 * 119.07841 * 180.02562 * 24 23 22 26 26 N 1.31948 * 120.83513 * 0.02562 * 25 24 23 27 27 C 1.31943 * 121.88531 * 359.97284 * 26 25 24 28 28 C 1.37987 * 120.83868 * 0.02562 * 27 26 25 29 29 H 1.08993 * 109.47066 * 59.99725 * 1 2 3 30 30 H 1.09000 * 109.47330 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47056 * 300.00279 * 1 2 3 32 32 H 1.08999 * 109.46714 * 240.00025 * 2 1 3 33 33 H 1.09001 * 109.46961 * 119.99936 * 2 1 3 34 34 H 1.09003 * 109.47161 * 23.14906 * 4 3 2 35 35 H 1.08998 * 109.46761 * 143.14903 * 4 3 2 36 36 H 0.96998 * 119.99782 * 180.02562 * 8 7 5 37 37 H 0.96994 * 120.00332 * 0.02562 * 17 15 13 38 38 H 1.07995 * 126.06040 * 359.97438 * 19 18 17 39 39 H 1.07997 * 125.74224 * 180.02562 * 20 19 18 40 40 H 1.08002 * 120.46041 * 359.97438 * 24 23 22 41 41 H 1.08000 * 119.58197 * 179.97438 * 25 24 23 42 42 H 1.08002 * 119.58019 * 179.97438 * 27 26 25 43 43 H 1.07990 * 120.46377 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3668 2.0350 -1.2639 5 6 3.8531 1.9316 -1.4898 6 1 4.4760 1.4296 -0.7642 7 6 4.4181 2.4788 -2.6222 8 7 3.6597 3.0906 -3.5055 9 14 6.2606 2.3514 -2.9019 10 1 6.6547 0.9208 -2.9598 11 1 6.6138 3.0139 -4.1831 12 1 6.9780 3.0176 -1.7853 13 6 2.1470 2.0505 1.1627 14 8 1.9285 1.4865 2.2149 15 6 2.5583 3.4858 1.1563 16 8 2.8698 4.0233 0.1135 17 7 2.5835 4.1846 2.3086 18 6 2.9663 5.5223 2.3025 19 6 3.3381 6.2495 1.2127 20 6 3.6419 7.5438 1.6439 21 7 3.4576 7.6047 2.9381 22 7 3.0380 6.3453 3.3856 23 6 2.7400 5.9970 4.7070 24 6 3.4569 6.5440 5.7693 25 6 3.1323 6.1742 7.0585 26 7 2.1583 5.3149 7.2906 27 6 1.4568 4.7755 6.3119 28 6 1.7192 5.0933 4.9950 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.8399 1.5460 -2.0833 35 1 2.0779 3.0851 -1.2215 36 1 4.0571 3.4753 -4.3024 37 1 2.3349 3.7551 3.1419 38 1 3.3891 5.8899 0.1957 39 1 3.9687 8.3581 1.0142 40 1 4.2561 7.2470 5.5862 41 1 3.6829 6.5928 7.8879 42 1 0.6677 4.0757 6.5444 43 1 1.1409 4.6486 4.1988 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615080195.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:19:03 Heat of formation + Delta-G solvation = 65.513458 kcal Electronic energy + Delta-G solvation = -29947.184001 eV Core-core repulsion = 25802.260711 eV Total energy + Delta-G solvation = -4144.923290 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.13075 -41.76731 -40.93971 -39.67330 -37.54555 -36.13799 -35.25601 -34.69913 -32.44429 -32.09776 -31.17768 -30.46092 -29.02979 -26.66256 -25.18188 -24.97426 -24.94038 -23.80143 -22.51222 -21.78017 -20.73609 -19.89742 -18.78939 -18.42404 -17.91070 -17.67847 -17.24061 -17.12227 -16.87292 -16.59827 -16.26815 -16.20797 -15.63459 -15.49225 -15.07626 -14.91586 -14.78467 -14.72573 -14.51294 -14.29955 -14.24132 -13.65962 -13.45725 -13.16981 -12.95288 -12.73493 -12.71894 -12.44763 -12.31779 -12.13768 -12.02390 -11.77763 -11.73594 -11.67236 -10.78633 -10.69205 -10.38663 -10.24529 -9.88771 -9.67060 -9.41209 -8.14716 -6.24319 -0.48551 -0.05887 0.18509 0.57377 0.91586 1.40218 1.42084 1.44405 1.49207 1.64789 2.13656 2.33946 2.47159 2.62308 3.16804 3.19064 3.32727 3.40366 3.61002 3.81415 3.94962 4.05433 4.14433 4.17269 4.34205 4.38913 4.50325 4.50814 4.62923 4.69737 4.76097 4.85178 4.93428 4.99507 5.02416 5.26366 5.36774 5.41798 5.48444 5.54203 5.67014 5.76551 5.90730 6.09833 6.23513 6.40624 6.56969 6.77968 6.80912 6.93575 7.42584 8.92867 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011332 B = 0.003730 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.325519 B = 7503.978921 C = 9178.540230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.103 3.897 3 N -0.558 5.558 4 C 0.237 3.763 5 C -0.531 4.531 6 H 0.044 0.956 7 C 0.028 3.972 8 N -0.915 5.915 9 Si 0.948 3.052 10 H -0.269 1.269 11 H -0.280 1.280 12 H -0.281 1.281 13 C 0.512 3.488 14 O -0.555 6.555 15 C 0.497 3.503 16 O -0.447 6.447 17 N -0.624 5.624 18 C 0.306 3.694 19 C -0.285 4.285 20 C 0.089 3.911 21 N -0.295 5.295 22 N -0.351 5.351 23 C 0.181 3.819 24 C -0.172 4.172 25 C 0.130 3.870 26 N -0.503 5.503 27 C 0.135 3.865 28 C -0.209 4.209 29 H 0.053 0.947 30 H 0.095 0.905 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.024 0.976 35 H 0.058 0.942 36 H 0.265 0.735 37 H 0.425 0.575 38 H 0.164 0.836 39 H 0.231 0.769 40 H 0.152 0.848 41 H 0.199 0.801 42 H 0.196 0.804 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.358 3.872 15.560 16.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.018 4.018 3 N -0.288 5.288 4 C 0.117 3.883 5 C -0.569 4.569 6 H 0.062 0.938 7 C -0.172 4.172 8 N -0.554 5.554 9 Si 0.774 3.226 10 H -0.194 1.194 11 H -0.205 1.205 12 H -0.207 1.207 13 C 0.294 3.706 14 O -0.436 6.436 15 C 0.278 3.722 16 O -0.315 6.315 17 N -0.277 5.277 18 C 0.090 3.910 19 C -0.316 4.316 20 C -0.098 4.098 21 N -0.114 5.114 22 N -0.133 5.133 23 C 0.081 3.919 24 C -0.194 4.194 25 C -0.026 4.026 26 N -0.213 5.213 27 C -0.022 4.022 28 C -0.232 4.232 29 H 0.072 0.928 30 H 0.113 0.887 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.042 0.958 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.266 0.734 38 H 0.182 0.818 39 H 0.247 0.753 40 H 0.170 0.830 41 H 0.216 0.784 42 H 0.213 0.787 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.428 4.420 17.000 18.114 hybrid contribution 1.120 -0.403 -1.982 2.312 sum -3.307 4.017 15.017 15.893 Atomic orbital electron populations 1.22048 0.93826 1.03733 1.01680 1.21741 0.95755 0.80628 1.03678 1.48299 1.58849 1.14375 1.07240 1.19707 0.95046 0.94658 0.78937 1.21378 0.93237 1.36443 1.05863 0.93765 1.25466 1.01581 0.94517 0.95676 1.69992 1.36830 1.37391 1.11222 0.85779 0.81085 0.78482 0.77281 1.19412 1.20481 1.20709 1.19400 0.79955 0.86442 0.84824 1.90663 1.53004 1.69332 1.30618 1.20553 0.79885 0.88549 0.83200 1.90885 1.40838 1.69669 1.30084 1.42719 1.65649 1.07095 1.12229 1.18256 1.00383 0.83379 0.89000 1.21906 1.15181 0.94756 0.99734 1.24504 0.95720 0.97851 0.91771 1.77533 1.23511 0.96584 1.13818 1.46026 1.55790 1.07911 1.03594 1.18163 0.95388 0.97086 0.81253 1.22203 1.01498 1.03215 0.92487 1.23289 0.92419 0.91380 0.95553 1.67838 1.07046 1.09651 1.36769 1.23146 0.97029 0.95822 0.86153 1.22223 0.98265 1.02076 1.00663 0.92836 0.88654 0.93112 0.89304 0.90048 0.95768 0.92486 0.92608 0.73431 0.81848 0.75296 0.83018 0.78433 0.78750 0.84201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.07 10.20 71.98 0.73 -3.33 16 2 C 0.10 3.34 6.08 86.38 0.53 3.87 16 3 N -0.56 -22.48 2.49 -827.89 -2.06 -24.54 16 4 C 0.24 11.38 4.75 85.63 0.41 11.79 16 5 C -0.53 -28.19 8.36 25.60 0.21 -27.98 16 6 H 0.04 2.39 7.81 -2.91 -0.02 2.37 16 7 C 0.03 1.51 5.46 84.65 0.46 1.98 16 8 N -0.92 -51.65 13.29 21.45 0.28 -51.36 16 9 Si 0.95 43.26 29.54 68.60 2.03 45.29 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 C 0.51 20.19 7.63 87.23 0.67 20.86 16 14 O -0.55 -21.13 16.12 -3.31 -0.05 -21.18 16 15 C 0.50 19.59 7.73 87.22 0.67 20.26 16 16 O -0.45 -20.44 9.52 -3.37 -0.03 -20.47 16 17 N -0.62 -20.61 5.04 -309.38 -1.56 -22.17 16 18 C 0.31 10.17 7.43 131.15 0.97 11.15 16 19 C -0.28 -9.72 9.65 22.16 0.21 -9.51 16 20 C 0.09 2.43 12.00 85.20 1.02 3.45 16 21 N -0.30 -8.58 12.36 -57.08 -0.71 -9.29 16 22 N -0.35 -10.38 3.77 -184.24 -0.69 -11.08 16 23 C 0.18 4.53 6.43 38.39 0.25 4.78 16 24 C -0.17 -3.52 9.89 22.48 0.22 -3.30 16 25 C 0.13 2.18 11.17 84.62 0.95 3.13 16 26 N -0.50 -9.72 10.36 -196.08 -2.03 -11.75 16 27 C 0.14 2.43 11.17 84.62 0.95 3.38 16 28 C -0.21 -4.51 8.54 22.48 0.19 -4.31 16 29 H 0.05 1.46 8.14 -2.39 -0.02 1.45 16 30 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.09 2.82 8.03 -2.39 -0.02 2.80 16 33 H 0.08 2.53 7.52 -2.39 -0.02 2.51 16 34 H 0.02 1.21 8.02 -2.39 -0.02 1.19 16 35 H 0.06 3.00 5.37 -2.45 -0.01 2.99 16 36 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 37 H 0.42 12.24 5.59 -92.71 -0.52 11.72 16 38 H 0.16 6.47 5.83 -2.91 -0.02 6.45 16 39 H 0.23 4.26 8.06 -2.91 -0.02 4.23 16 40 H 0.15 2.88 8.06 -2.91 -0.02 2.85 16 41 H 0.20 1.85 8.06 -2.91 -0.02 1.82 16 42 H 0.20 2.26 8.06 -2.91 -0.02 2.24 16 43 H 0.14 2.94 6.41 -2.92 -0.02 2.93 16 Total: -1.00 -67.30 369.84 4.17 -63.13 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 0.55 Total: 27.21 kcal Atomic # 6 Polarization: 27.76 SS G_CDS: 8.45 Total: 36.20 kcal Atomic # 7 Polarization: -123.42 SS G_CDS: -6.76 Total: -130.18 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -0.09 Total: -41.65 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -67.30 4.17 -63.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615080195.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.640 kcal (2) G-P(sol) polarization free energy of solvation -67.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds