Wall clock time and date at job start Wed Apr 1 2020 01:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08991 * 109.47747 * 2 1 4 4 C 1.50707 * 109.47040 * 120.00418 * 2 1 3 5 5 H 1.07998 * 120.00274 * 119.99965 * 4 2 1 6 6 C 1.37876 * 119.99775 * 299.99319 * 4 2 1 7 7 N 1.31513 * 119.99816 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99899 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46914 * 90.00234 * 8 6 4 10 10 H 1.48500 * 109.46948 * 210.00077 * 8 6 4 11 11 H 1.48500 * 109.47286 * 330.00683 * 8 6 4 12 12 N 1.46498 * 109.46903 * 239.99671 * 2 1 3 13 13 C 1.46501 * 120.00466 * 300.00349 * 12 2 1 14 14 C 1.34781 * 120.00014 * 120.00134 * 12 2 1 15 15 O 1.21368 * 119.99527 * 3.63701 * 14 12 2 16 16 C 1.49304 * 120.00418 * 183.63372 * 14 12 2 17 17 O 1.21397 * 119.99537 * 354.16649 * 16 14 12 18 18 N 1.34774 * 120.00218 * 174.16578 * 16 14 12 19 19 C 1.39129 * 120.00232 * 179.97438 * 18 16 14 20 20 C 1.36189 * 126.29102 * 0.02949 * 19 18 16 21 21 C 1.39756 * 107.87777 * 179.97438 * 20 19 18 22 22 N 1.30872 * 108.51651 * 359.74225 * 21 20 19 23 23 N 1.36218 * 126.29768 * 180.02562 * 19 18 16 24 24 C 1.39863 * 126.12122 * 359.97438 * 23 19 18 25 25 C 1.39341 * 120.85681 * 145.00187 * 24 23 19 26 26 C 1.37986 * 119.08104 * 180.02562 * 25 24 23 27 27 N 1.31947 * 120.83115 * 0.02562 * 26 25 24 28 28 C 1.31944 * 121.89322 * 359.97438 * 27 26 25 29 29 C 1.37999 * 120.82744 * 359.97438 * 28 27 26 30 30 H 1.08999 * 109.47578 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46713 * 300.00000 * 1 2 3 32 32 H 1.08995 * 109.47241 * 59.99745 * 1 2 3 33 33 H 0.97001 * 119.99635 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.47218 * 263.99070 * 13 12 2 35 35 H 1.08999 * 109.46875 * 23.98835 * 13 12 2 36 36 H 1.08996 * 109.47331 * 143.98403 * 13 12 2 37 37 H 0.97002 * 119.99762 * 0.02562 * 18 16 14 38 38 H 1.08002 * 126.06574 * 359.97438 * 20 19 18 39 39 H 1.07995 * 125.74122 * 179.97438 * 21 20 19 40 40 H 1.08008 * 120.46132 * 0.02562 * 25 24 23 41 41 H 1.07997 * 119.58441 * 179.97438 * 26 25 24 42 42 H 1.07998 * 119.58654 * 179.97438 * 28 27 26 43 43 H 1.07994 * 120.45591 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3213 -1.1205 4.0079 9 1 3.6297 -0.5462 4.4123 10 1 1.3431 -0.9494 5.1120 11 1 2.4858 -2.5664 3.7119 12 7 2.0182 -0.6907 -1.1961 13 6 1.6643 -2.0932 -1.4280 14 6 2.7931 -0.0357 -2.0834 15 8 3.1409 1.1052 -1.8591 16 6 3.2238 -0.7138 -3.3420 17 8 2.9661 -1.8869 -3.5181 18 7 3.8985 -0.0234 -4.2824 19 6 4.3003 -0.6553 -5.4550 20 6 4.0810 -1.9585 -5.7843 21 6 4.6452 -2.1838 -7.0429 22 7 5.1797 -1.0663 -7.4648 23 7 4.9852 -0.0845 -6.4848 24 6 5.4118 1.2457 -6.5543 25 6 6.6146 1.5791 -7.1737 26 6 7.0003 2.9031 -7.2209 27 7 6.2467 3.8464 -6.6887 28 6 5.1016 3.5710 -6.0938 29 6 4.6450 2.2717 -6.0057 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 0.7083 1.1608 3.4844 34 1 2.4674 -2.7353 -1.0661 35 1 0.7430 -2.3283 -0.8950 36 1 1.5190 -2.2597 -2.4954 37 1 4.1047 0.9139 -4.1415 38 1 3.5629 -2.6885 -5.1800 39 1 4.6377 -3.1214 -7.5789 40 1 7.2364 0.8118 -7.6109 41 1 7.9312 3.1706 -7.6986 42 1 4.5144 4.3724 -5.6703 43 1 3.7067 2.0532 -5.5178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615253207.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:53 Heat of formation + Delta-G solvation = 85.834765 kcal Electronic energy + Delta-G solvation = -29445.001296 eV Core-core repulsion = 25300.959204 eV Total energy + Delta-G solvation = -4144.042092 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.20227 -40.59067 -40.11084 -38.31179 -36.18260 -35.12689 -34.42595 -32.87613 -31.72675 -30.33829 -29.79535 -29.35577 -26.48210 -25.42423 -25.03153 -24.28377 -24.13544 -22.04738 -21.42909 -20.43008 -19.58851 -18.74783 -17.32679 -16.99834 -16.66790 -16.55012 -16.22458 -16.03085 -15.88158 -15.40415 -15.20714 -14.80456 -14.57906 -14.18322 -14.08691 -13.99823 -13.75293 -13.49046 -13.24687 -12.73548 -12.55235 -12.28385 -11.96811 -11.68023 -11.42143 -11.20233 -11.16561 -10.94407 -10.91865 -10.87156 -10.73268 -10.33271 -10.27579 -10.00824 -9.67624 -9.34903 -9.05884 -9.01543 -8.55286 -8.47797 -7.89832 -6.19539 -4.28236 0.35741 0.64945 1.26261 1.56853 1.94798 2.48460 2.59907 3.21677 3.28503 3.30515 3.34174 3.45822 3.69382 4.03649 4.11298 4.29515 4.35683 4.51446 4.55290 4.69912 4.87579 5.01207 5.12722 5.17100 5.31006 5.35610 5.49162 5.63587 5.80827 5.89512 6.09746 6.14515 6.39391 6.41282 6.57112 6.61212 6.63059 6.78973 6.85808 7.07949 7.21737 7.33392 7.52963 7.55734 7.57777 7.83950 7.97097 8.19912 8.39609 8.75869 9.38503 10.85948 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.015160 B = 0.002752 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.542905 B =10173.028153 C =11254.591720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.255 3.745 3 H 0.068 0.932 4 C -0.530 4.530 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.887 5.887 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.545 5.545 13 C 0.069 3.931 14 C 0.497 3.503 15 O -0.532 6.532 16 C 0.516 3.484 17 O -0.479 6.479 18 N -0.632 5.632 19 C 0.316 3.684 20 C -0.268 4.268 21 C 0.078 3.922 22 N -0.284 5.284 23 N -0.349 5.349 24 C 0.206 3.794 25 C -0.168 4.168 26 C 0.124 3.876 27 N -0.488 5.488 28 C 0.134 3.866 29 C -0.202 4.202 30 H 0.035 0.965 31 H 0.098 0.902 32 H 0.014 0.986 33 H 0.265 0.735 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.423 0.577 38 H 0.184 0.816 39 H 0.196 0.804 40 H 0.147 0.853 41 H 0.167 0.833 42 H 0.171 0.829 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.332 -1.425 -18.734 19.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.156 3.844 3 H 0.086 0.914 4 C -0.568 4.568 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.275 5.275 13 C -0.074 4.074 14 C 0.277 3.723 15 O -0.411 6.411 16 C 0.299 3.701 17 O -0.350 6.350 18 N -0.283 5.283 19 C 0.100 3.900 20 C -0.299 4.299 21 C -0.110 4.110 22 N -0.103 5.103 23 N -0.132 5.132 24 C 0.105 3.895 25 C -0.190 4.190 26 C -0.033 4.033 27 N -0.198 5.198 28 C -0.023 4.023 29 C -0.225 4.225 30 H 0.054 0.946 31 H 0.117 0.883 32 H 0.033 0.967 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.263 0.737 38 H 0.201 0.799 39 H 0.213 0.787 40 H 0.165 0.835 41 H 0.184 0.816 42 H 0.188 0.812 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.080 -0.075 -19.423 20.673 hybrid contribution -0.307 -1.412 1.632 2.180 sum 6.773 -1.487 -17.791 19.095 Atomic orbital electron populations 1.22128 0.97382 0.99951 1.01240 1.19236 0.91373 0.94594 0.79242 0.91445 1.21258 1.32376 1.13287 0.89910 0.91957 1.24879 0.94751 0.94943 0.99028 1.69863 1.35994 1.22523 1.24058 0.86435 0.78678 0.79936 0.82036 1.20508 1.21004 1.19781 1.48311 1.44889 1.12661 1.21617 1.22204 1.01398 0.81103 1.02714 1.19289 0.82344 0.86766 0.83912 1.90750 1.55911 1.17603 1.76864 1.21101 0.77651 0.86822 0.84527 1.90604 1.51037 1.15504 1.77830 1.42980 1.54603 1.15956 1.14736 1.18267 0.96028 0.91981 0.83698 1.21841 1.13523 0.94701 0.99811 1.24018 0.95005 0.97047 0.94910 1.77610 1.25856 0.96909 1.09882 1.45942 1.45916 1.07629 1.13698 1.17741 0.93499 0.80471 0.97791 1.22032 0.95325 0.99171 1.02466 1.22797 0.98641 0.87590 0.94285 1.67755 1.05595 1.37264 1.09181 1.22762 0.91946 0.94487 0.93074 1.22139 1.01486 0.93537 1.05379 0.94607 0.88309 0.96704 0.92479 0.92630 0.90773 0.89403 0.73706 0.79947 0.78715 0.83531 0.81634 0.81233 0.84157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 8.96 37.16 0.33 -3.00 16 2 C 0.25 6.14 2.63 -69.08 -0.18 5.96 16 3 H 0.07 1.85 6.90 -51.93 -0.36 1.49 16 4 C -0.53 -13.77 8.37 -34.44 -0.29 -14.05 16 5 H 0.06 1.61 7.65 -52.49 -0.40 1.21 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -23.99 11.32 55.43 0.63 -23.36 16 8 Si 0.90 20.43 29.54 -169.99 -5.02 15.40 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 12 N -0.54 -11.18 2.75 -175.83 -0.48 -11.67 16 13 C 0.07 1.19 8.76 59.85 0.52 1.71 16 14 C 0.50 9.65 7.73 -11.65 -0.09 9.56 16 15 O -0.53 -11.47 15.82 5.48 0.09 -11.38 16 16 C 0.52 8.26 7.73 -11.65 -0.09 8.17 16 17 O -0.48 -7.60 10.26 5.46 0.06 -7.54 16 18 N -0.63 -8.80 5.04 -11.74 -0.06 -8.86 16 19 C 0.32 4.27 7.43 -152.60 -1.13 3.14 16 20 C -0.27 -3.37 9.65 -39.75 -0.38 -3.76 16 21 C 0.08 0.83 12.00 -17.39 -0.21 0.62 16 22 N -0.28 -3.51 12.36 30.61 0.38 -3.14 16 23 N -0.35 -4.46 3.77 -9.59 -0.04 -4.50 16 24 C 0.21 2.37 6.43 -83.37 -0.54 1.83 16 25 C -0.17 -1.63 9.89 -39.26 -0.39 -2.02 16 26 C 0.12 1.08 11.17 -17.59 -0.20 0.89 16 27 N -0.49 -5.04 10.36 -13.33 -0.14 -5.18 16 28 C 0.13 1.28 11.17 -17.59 -0.20 1.09 16 29 C -0.20 -2.10 8.54 -39.26 -0.34 -2.44 16 30 H 0.03 0.74 6.67 -51.93 -0.35 0.40 16 31 H 0.10 2.44 6.07 -51.93 -0.32 2.13 16 32 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.07 1.27 6.44 -51.93 -0.33 0.93 16 36 H 0.09 1.38 5.35 -51.94 -0.28 1.10 16 37 H 0.42 5.53 5.61 -40.82 -0.23 5.30 16 38 H 0.18 2.35 5.83 -52.49 -0.31 2.04 16 39 H 0.20 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.15 1.28 8.06 -52.48 -0.42 0.86 16 41 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 43 H 0.14 1.39 6.42 -52.49 -0.34 1.05 16 LS Contribution 362.05 15.07 5.46 5.46 Total: -1.00 -30.54 362.05 -6.98 -37.52 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -4.58 Total: 7.89 kcal Atomic # 6 Polarization: 12.62 SS G_CDS: -3.27 Total: 9.35 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: 0.29 Total: -56.71 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: 0.14 Total: -18.92 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.54 -6.98 -37.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615253207.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.357 kcal (2) G-P(sol) polarization free energy of solvation -30.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds