Wall clock time and date at job start Wed Apr 1 2020 01:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08991 * 109.47747 * 2 1 4 4 C 1.50707 * 109.47040 * 120.00418 * 2 1 3 5 5 H 1.07998 * 120.00274 * 119.99965 * 4 2 1 6 6 C 1.37876 * 119.99775 * 299.99319 * 4 2 1 7 7 N 1.31513 * 119.99816 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99899 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46914 * 90.00234 * 8 6 4 10 10 H 1.48500 * 109.46948 * 210.00077 * 8 6 4 11 11 H 1.48500 * 109.47286 * 330.00683 * 8 6 4 12 12 N 1.46498 * 109.46903 * 239.99671 * 2 1 3 13 13 C 1.46501 * 120.00466 * 300.00349 * 12 2 1 14 14 C 1.34781 * 120.00014 * 120.00134 * 12 2 1 15 15 O 1.21368 * 119.99527 * 3.63701 * 14 12 2 16 16 C 1.49304 * 120.00418 * 183.63372 * 14 12 2 17 17 O 1.21397 * 119.99537 * 354.16649 * 16 14 12 18 18 N 1.34774 * 120.00218 * 174.16578 * 16 14 12 19 19 C 1.39129 * 120.00232 * 179.97438 * 18 16 14 20 20 C 1.36189 * 126.29102 * 0.02949 * 19 18 16 21 21 C 1.39756 * 107.87777 * 179.97438 * 20 19 18 22 22 N 1.30872 * 108.51651 * 359.74225 * 21 20 19 23 23 N 1.36218 * 126.29768 * 180.02562 * 19 18 16 24 24 C 1.39863 * 126.12122 * 359.97438 * 23 19 18 25 25 C 1.39341 * 120.85681 * 145.00187 * 24 23 19 26 26 C 1.37986 * 119.08104 * 180.02562 * 25 24 23 27 27 N 1.31947 * 120.83115 * 0.02562 * 26 25 24 28 28 C 1.31944 * 121.89322 * 359.97438 * 27 26 25 29 29 C 1.37999 * 120.82744 * 359.97438 * 28 27 26 30 30 H 1.08999 * 109.47578 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46713 * 300.00000 * 1 2 3 32 32 H 1.08995 * 109.47241 * 59.99745 * 1 2 3 33 33 H 0.97001 * 119.99635 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.47218 * 263.99070 * 13 12 2 35 35 H 1.08999 * 109.46875 * 23.98835 * 13 12 2 36 36 H 1.08996 * 109.47331 * 143.98403 * 13 12 2 37 37 H 0.97002 * 119.99762 * 0.02562 * 18 16 14 38 38 H 1.08002 * 126.06574 * 359.97438 * 20 19 18 39 39 H 1.07995 * 125.74122 * 179.97438 * 21 20 19 40 40 H 1.08008 * 120.46132 * 0.02562 * 25 24 23 41 41 H 1.07997 * 119.58441 * 179.97438 * 26 25 24 42 42 H 1.07998 * 119.58654 * 179.97438 * 28 27 26 43 43 H 1.07994 * 120.45591 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3213 -1.1205 4.0079 9 1 3.6297 -0.5462 4.4123 10 1 1.3431 -0.9494 5.1120 11 1 2.4858 -2.5664 3.7119 12 7 2.0182 -0.6907 -1.1961 13 6 1.6643 -2.0932 -1.4280 14 6 2.7931 -0.0357 -2.0834 15 8 3.1409 1.1052 -1.8591 16 6 3.2238 -0.7138 -3.3420 17 8 2.9661 -1.8869 -3.5181 18 7 3.8985 -0.0234 -4.2824 19 6 4.3003 -0.6553 -5.4550 20 6 4.0810 -1.9585 -5.7843 21 6 4.6452 -2.1838 -7.0429 22 7 5.1797 -1.0663 -7.4648 23 7 4.9852 -0.0845 -6.4848 24 6 5.4118 1.2457 -6.5543 25 6 6.6146 1.5791 -7.1737 26 6 7.0003 2.9031 -7.2209 27 7 6.2467 3.8464 -6.6887 28 6 5.1016 3.5710 -6.0938 29 6 4.6450 2.2717 -6.0057 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 0.7083 1.1608 3.4844 34 1 2.4674 -2.7353 -1.0661 35 1 0.7430 -2.3283 -0.8950 36 1 1.5190 -2.2597 -2.4954 37 1 4.1047 0.9139 -4.1415 38 1 3.5629 -2.6885 -5.1800 39 1 4.6377 -3.1214 -7.5789 40 1 7.2364 0.8118 -7.6109 41 1 7.9312 3.1706 -7.6986 42 1 4.5144 4.3724 -5.6703 43 1 3.7067 2.0532 -5.5178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615253207.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:52 Heat of formation + Delta-G solvation = 67.286564 kcal Electronic energy + Delta-G solvation = -29445.805606 eV Core-core repulsion = 25300.959204 eV Total energy + Delta-G solvation = -4144.846402 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.18736 -41.84749 -40.95970 -39.76810 -37.70988 -36.40570 -35.35827 -34.71424 -32.46409 -31.53438 -31.19190 -30.46869 -27.94141 -27.34352 -26.43398 -25.15136 -24.96278 -23.32068 -22.44635 -21.68153 -20.82866 -19.94077 -18.75931 -18.30982 -18.08840 -17.73372 -17.35296 -17.19280 -17.13726 -16.65098 -16.28751 -16.20841 -15.74559 -15.33268 -15.04062 -14.91390 -14.81288 -14.74728 -14.51159 -14.27845 -14.09980 -13.58215 -13.39569 -13.00452 -12.93497 -12.77126 -12.73994 -12.55943 -12.32922 -12.20510 -12.11676 -11.97254 -11.74314 -11.24143 -10.78078 -10.59365 -10.46310 -10.39058 -9.92448 -9.61744 -9.44579 -8.18343 -6.34434 -0.52556 -0.08096 0.05348 0.51127 0.90295 1.36349 1.42371 1.44496 1.53742 1.65857 2.02648 2.29587 2.44062 2.60305 3.05854 3.11383 3.32177 3.38202 3.58938 3.80258 3.92454 4.01868 4.11178 4.33937 4.40617 4.47525 4.54412 4.67375 4.71751 4.76361 4.83560 4.86825 4.96014 4.98270 5.08689 5.36014 5.36073 5.38942 5.49322 5.60368 5.62635 5.77233 5.92425 6.07804 6.27532 6.41850 6.50880 6.68202 6.79967 6.87883 7.36285 8.86143 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.015160 B = 0.002752 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.542905 B =10173.028153 C =11254.591720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.259 3.741 3 H 0.026 0.974 4 C -0.544 4.544 5 H 0.059 0.941 6 C 0.022 3.978 7 N -0.912 5.912 8 Si 0.962 3.038 9 H -0.281 1.281 10 H -0.279 1.279 11 H -0.265 1.265 12 N -0.554 5.554 13 C 0.072 3.928 14 C 0.493 3.507 15 O -0.560 6.560 16 C 0.528 3.472 17 O -0.476 6.476 18 N -0.621 5.621 19 C 0.295 3.705 20 C -0.270 4.270 21 C 0.088 3.912 22 N -0.296 5.296 23 N -0.352 5.352 24 C 0.181 3.819 25 C -0.169 4.169 26 C 0.128 3.872 27 N -0.505 5.505 28 C 0.132 3.868 29 C -0.210 4.210 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.027 0.973 33 H 0.267 0.733 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.425 0.575 38 H 0.182 0.818 39 H 0.237 0.763 40 H 0.156 0.844 41 H 0.199 0.801 42 H 0.190 0.810 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.146 -2.739 -20.045 21.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.158 3.842 3 H 0.044 0.956 4 C -0.582 4.582 5 H 0.078 0.922 6 C -0.179 4.179 7 N -0.551 5.551 8 Si 0.787 3.213 9 H -0.207 1.207 10 H -0.204 1.204 11 H -0.189 1.189 12 N -0.284 5.284 13 C -0.069 4.069 14 C 0.274 3.726 15 O -0.441 6.441 16 C 0.310 3.690 17 O -0.348 6.348 18 N -0.272 5.272 19 C 0.079 3.921 20 C -0.301 4.301 21 C -0.099 4.099 22 N -0.115 5.115 23 N -0.134 5.134 24 C 0.081 3.919 25 C -0.190 4.190 26 C -0.028 4.028 27 N -0.215 5.215 28 C -0.025 4.025 29 C -0.233 4.233 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.126 0.874 37 H 0.266 0.734 38 H 0.199 0.801 39 H 0.253 0.747 40 H 0.174 0.826 41 H 0.216 0.784 42 H 0.207 0.793 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.905 -1.396 -20.775 22.272 hybrid contribution -0.498 -0.963 1.933 2.217 sum 7.407 -2.359 -18.842 20.382 Atomic orbital electron populations 1.21929 0.96216 1.00626 1.00689 1.18862 0.92216 0.92678 0.80396 0.95605 1.21506 1.32446 1.13295 0.90955 0.92230 1.25637 0.94904 0.95578 1.01734 1.69984 1.36797 1.23603 1.24670 0.85492 0.77895 0.79168 0.78708 1.20746 1.20422 1.18888 1.48244 1.45339 1.13804 1.21027 1.22330 1.01419 0.79174 1.04020 1.19790 0.81517 0.86490 0.84801 1.90728 1.56678 1.18951 1.77737 1.20145 0.78396 0.86599 0.83816 1.90597 1.51430 1.15089 1.77690 1.42690 1.53908 1.15914 1.14645 1.18379 0.97336 0.92599 0.83773 1.21987 1.13290 0.94241 1.00604 1.24639 0.93274 0.97896 0.94080 1.77593 1.26360 0.97407 1.10152 1.46039 1.45846 1.08119 1.13418 1.18085 0.94560 0.80254 0.98995 1.22203 0.94817 0.99889 1.02130 1.23322 0.99281 0.86931 0.93297 1.67828 1.06012 1.37924 1.09711 1.23110 0.92002 0.94722 0.92672 1.22199 1.01587 0.93820 1.05664 0.93204 0.90696 0.95345 0.92403 0.92526 0.90579 0.87444 0.73394 0.80127 0.74732 0.82624 0.78449 0.79304 0.84286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.16 8.96 71.98 0.64 -5.52 16 2 C 0.26 12.76 2.63 44.25 0.12 12.88 16 3 H 0.03 1.48 6.90 -2.39 -0.02 1.47 16 4 C -0.54 -28.53 8.37 25.60 0.21 -28.31 16 5 H 0.06 3.09 7.65 -2.91 -0.02 3.06 16 6 C 0.02 1.16 5.30 84.65 0.45 1.60 16 7 N -0.91 -50.16 11.32 21.45 0.24 -49.92 16 8 Si 0.96 41.81 29.54 68.60 2.03 43.83 16 9 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 10 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 11 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 12 N -0.55 -22.86 2.75 -828.56 -2.28 -25.14 16 13 C 0.07 2.43 8.76 127.77 1.12 3.55 16 14 C 0.49 19.34 7.73 87.22 0.67 20.02 16 15 O -0.56 -24.89 15.82 -3.30 -0.05 -24.94 16 16 C 0.53 16.67 7.73 87.22 0.67 17.35 16 17 O -0.48 -14.51 10.26 -3.39 -0.03 -14.54 16 18 N -0.62 -17.11 5.04 -309.39 -1.56 -18.67 16 19 C 0.29 7.69 7.43 131.15 0.97 8.66 16 20 C -0.27 -6.34 9.65 22.16 0.21 -6.12 16 21 C 0.09 1.65 12.00 85.20 1.02 2.68 16 22 N -0.30 -6.80 12.36 -57.08 -0.71 -7.51 16 23 N -0.35 -8.64 3.77 -184.26 -0.69 -9.33 16 24 C 0.18 4.04 6.43 38.39 0.25 4.29 16 25 C -0.17 -3.06 9.89 22.48 0.22 -2.84 16 26 C 0.13 2.03 11.17 84.62 0.95 2.97 16 27 N -0.51 -9.80 10.36 -196.08 -2.03 -11.83 16 28 C 0.13 2.43 11.17 84.62 0.95 3.37 16 29 C -0.21 -4.30 8.54 22.48 0.19 -4.11 16 30 H 0.05 2.06 6.67 -2.39 -0.02 2.05 16 31 H 0.07 3.77 6.07 -2.39 -0.01 3.76 16 32 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 34 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.08 2.51 6.44 -2.39 -0.02 2.50 16 36 H 0.11 3.20 5.35 -2.51 -0.01 3.18 16 37 H 0.43 11.24 5.61 -92.71 -0.52 10.72 16 38 H 0.18 4.31 5.83 -2.91 -0.02 4.29 16 39 H 0.24 2.15 8.06 -2.91 -0.02 2.13 16 40 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 41 H 0.20 1.67 8.06 -2.91 -0.02 1.64 16 42 H 0.19 2.52 8.06 -2.91 -0.02 2.50 16 43 H 0.14 2.80 6.42 -2.91 -0.02 2.78 16 Total: -1.00 -66.03 362.05 4.13 -61.90 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: 0.56 Total: 25.68 kcal Atomic # 6 Polarization: 21.81 SS G_CDS: 8.65 Total: 30.46 kcal Atomic # 7 Polarization: -115.37 SS G_CDS: -7.03 Total: -122.40 kcal Atomic # 8 Polarization: -39.40 SS G_CDS: -0.09 Total: -39.48 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Total: -66.03 4.13 -61.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615253207.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.189 kcal (2) G-P(sol) polarization free energy of solvation -66.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds