Wall clock time and date at job start Wed Apr 1 2020 01:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35676 * 116.99916 * 2 1 4 4 C 1.38917 * 119.68428 * 180.02562 * 3 2 1 5 5 C 1.38381 * 119.11568 * 179.97438 * 4 3 2 6 6 C 1.38827 * 118.47953 * 0.02562 * 5 4 3 7 7 C 1.50709 * 120.35299 * 179.97438 * 6 5 4 8 8 N 1.46498 * 109.47113 * 89.99670 * 7 6 5 9 9 C 1.46498 * 119.99874 * 274.99977 * 8 7 6 10 10 S 1.65595 * 119.99850 * 95.00266 * 8 7 6 11 11 O 1.42105 * 106.40149 * 203.53728 * 10 8 7 12 12 O 1.42098 * 106.40317 * 336.45602 * 10 8 7 13 13 N 1.65606 * 107.22013 * 89.99911 * 10 8 7 14 14 C 1.46504 * 119.99819 * 269.99910 * 13 10 8 15 15 C 1.46489 * 120.00129 * 89.99663 * 13 10 8 16 16 H 1.09006 * 109.47494 * 0.02562 * 15 13 10 17 17 C 1.53001 * 109.47367 * 239.99892 * 15 13 10 18 18 C 1.50706 * 109.47403 * 120.00178 * 15 13 10 19 19 H 1.07999 * 119.99433 * 359.97438 * 18 15 13 20 20 C 1.37871 * 120.00236 * 179.97438 * 18 15 13 21 21 N 1.31509 * 120.00376 * 0.02562 * 20 18 15 22 22 Si 1.86802 * 119.99846 * 179.97438 * 20 18 15 23 23 H 1.48508 * 109.47019 * 90.00103 * 22 20 18 24 24 H 1.48501 * 109.47000 * 210.00061 * 22 20 18 25 25 H 1.48501 * 109.47230 * 330.00284 * 22 20 18 26 26 C 1.38049 * 119.29441 * 0.24757 * 6 5 4 27 27 N 1.31960 * 120.82916 * 359.45893 * 26 6 5 28 28 H 1.09000 * 109.47083 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46964 * 299.99810 * 1 2 3 30 30 H 1.08994 * 109.47144 * 59.99768 * 1 2 3 31 31 H 1.08002 * 120.44387 * 0.02562 * 4 3 2 32 32 H 1.08000 * 120.76301 * 180.02562 * 5 4 3 33 33 H 1.08996 * 109.46757 * 329.99113 * 7 6 5 34 34 H 1.09003 * 109.46750 * 209.99729 * 7 6 5 35 35 H 1.09009 * 109.46956 * 270.00331 * 9 8 7 36 36 H 1.08994 * 109.47112 * 30.00030 * 9 8 7 37 37 H 1.09001 * 109.47155 * 150.00738 * 9 8 7 38 38 H 1.08999 * 109.47095 * 89.99844 * 14 13 10 39 39 H 1.08991 * 109.46942 * 210.00257 * 14 13 10 40 40 H 1.09009 * 109.46796 * 329.99896 * 14 13 10 41 41 H 1.09010 * 109.46956 * 60.00176 * 17 15 13 42 42 H 1.09001 * 109.47294 * 179.97438 * 17 15 13 43 43 H 1.08997 * 109.47095 * 300.00351 * 17 15 13 44 44 H 0.96998 * 120.00587 * 179.97438 * 21 20 18 45 45 H 1.08000 * 119.58293 * 179.72708 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2740 -0.0005 5 6 4.0486 2.5131 -0.0011 6 6 3.2505 3.6491 -0.0005 7 6 3.8768 5.0199 -0.0005 8 7 4.0793 5.4643 -1.3817 9 6 5.2867 5.0664 -2.1096 10 16 2.9433 6.4164 -2.1200 11 8 3.1067 6.2248 -3.5185 12 8 1.7179 6.1788 -1.4409 13 7 3.3501 7.9922 -1.8133 14 6 2.8250 8.6659 -0.6230 15 6 4.2349 8.7124 -2.7321 16 1 4.5210 8.0538 -3.5523 17 6 5.4882 9.1673 -1.9818 18 6 3.5147 9.9162 -3.2831 19 1 2.4993 10.1236 -2.9794 20 6 4.1522 10.7525 -4.1747 21 7 5.3885 10.4997 -4.5449 22 14 3.2592 12.2442 -4.8581 23 1 3.4987 13.4127 -3.9735 24 1 3.7665 12.5431 -6.2214 25 1 1.8026 11.9625 -4.9227 26 6 1.8771 3.5097 0.0058 27 7 1.3186 2.3141 0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 4.0229 0.3695 -0.0014 32 1 5.1255 2.5947 -0.0019 33 1 4.8374 4.9803 0.5131 34 1 3.2185 5.7201 0.5138 35 1 6.0690 5.8084 -1.9488 36 1 5.6263 4.0962 -1.7472 37 1 5.0634 4.9988 -3.1743 38 1 3.5110 8.5174 0.2109 39 1 2.7231 9.7322 -0.8243 40 1 1.8500 8.2491 -0.3701 41 1 6.0092 8.2966 -1.5833 42 1 6.1468 9.7028 -2.6656 43 1 5.2019 9.8260 -1.1619 44 1 5.8369 11.0878 -5.1725 45 1 1.2518 4.3903 0.0107 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619750836.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:37 Heat of formation + Delta-G solvation = -65.382679 kcal Electronic energy + Delta-G solvation = -29073.256819 eV Core-core repulsion = 25025.808647 eV Total energy + Delta-G solvation = -4047.448172 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.75201 -38.31779 -36.76619 -36.17983 -36.07957 -35.24453 -32.60113 -32.58951 -31.33998 -29.12755 -28.02068 -26.75332 -25.53357 -25.20847 -24.72328 -23.41982 -22.02049 -20.73882 -18.52431 -18.41455 -17.56786 -17.00871 -16.90761 -16.33466 -16.16153 -15.92253 -15.51920 -14.88905 -14.65288 -14.41536 -14.26559 -13.76062 -13.44802 -13.35982 -13.29448 -13.18789 -12.74442 -12.66389 -12.26292 -12.07060 -12.03161 -11.89471 -11.81543 -11.43017 -11.37143 -11.26497 -11.24278 -11.13271 -10.93246 -10.82940 -10.46616 -10.24878 -10.07840 -10.01428 -9.75238 -9.29917 -8.96293 -8.55272 -8.47033 -7.98420 -6.09446 -4.16009 0.92538 1.10398 1.26568 2.93881 3.26977 3.34238 3.36539 3.39726 3.70601 4.04701 4.27186 4.38580 4.63892 4.69432 4.83061 4.90523 5.01858 5.10123 5.14151 5.15399 5.22390 5.36027 5.45154 5.50953 5.65494 5.68640 5.74066 5.83912 5.96860 6.01574 6.08803 6.21207 6.33129 6.33827 6.60128 6.66601 6.80923 6.81949 7.01380 7.07785 7.44385 7.60598 7.76447 7.77010 8.02596 8.25330 8.85919 9.49814 10.96275 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.025390 B = 0.002888 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.545848 B = 9693.339671 C =10054.674144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.311 6.311 3 C 0.316 3.684 4 C -0.197 4.197 5 C -0.026 4.026 6 C -0.198 4.198 7 C 0.178 3.822 8 N -1.011 6.011 9 C 0.087 3.913 10 S 2.776 3.224 11 O -0.971 6.971 12 O -0.993 6.993 13 N -0.988 5.988 14 C 0.096 3.904 15 C 0.268 3.732 16 H 0.058 0.942 17 C -0.146 4.146 18 C -0.521 4.521 19 H 0.063 0.937 20 C 0.064 3.936 21 N -0.890 5.890 22 Si 0.898 3.102 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.273 1.273 26 C 0.160 3.840 27 N -0.540 5.540 28 H 0.094 0.906 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.037 0.963 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.010 0.990 42 H 0.092 0.908 43 H 0.032 0.968 44 H 0.263 0.737 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.879 -15.537 12.129 19.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.218 6.218 3 C 0.137 3.863 4 C -0.217 4.217 5 C -0.052 4.052 6 C -0.203 4.203 7 C 0.051 3.949 8 N -0.848 5.848 9 C -0.058 4.058 10 S 2.786 3.214 11 O -0.955 6.955 12 O -0.977 6.977 13 N -0.831 5.831 14 C -0.051 4.051 15 C 0.165 3.835 16 H 0.075 0.925 17 C -0.206 4.206 18 C -0.561 4.561 19 H 0.081 0.919 20 C -0.138 4.138 21 N -0.529 5.529 22 Si 0.725 3.275 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.198 1.198 26 C 0.004 3.996 27 N -0.263 5.263 28 H 0.112 0.888 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.158 0.842 32 H 0.159 0.841 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.055 0.945 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.029 0.971 42 H 0.110 0.890 43 H 0.052 0.948 44 H 0.073 0.927 45 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -2.269 -16.133 11.481 19.931 hybrid contribution 0.633 1.113 -0.214 1.298 sum -1.636 -15.021 11.267 18.848 Atomic orbital electron populations 1.22854 0.77246 1.02750 1.02690 1.86213 1.22959 1.24768 1.87907 1.19943 0.89504 0.84852 0.92014 1.21014 0.91979 0.99441 1.09293 1.21317 1.00356 0.90700 0.92845 1.21212 0.95200 0.97197 1.06665 1.19884 1.01000 0.91042 0.82967 1.58212 1.37272 1.66574 1.22736 1.21520 0.86608 1.00345 0.97372 1.02124 0.73129 0.72872 0.73301 1.93588 1.86233 1.85572 1.30117 1.93478 1.42272 1.85582 1.76337 1.57727 1.63213 1.27773 1.34372 1.21317 0.97089 1.00650 0.86045 1.18725 0.86267 0.92394 0.86124 0.92482 1.22109 0.99683 0.98588 1.00176 1.21333 0.99931 1.08928 1.25866 0.91924 1.24900 0.94971 0.97986 0.95987 1.69849 1.11349 1.38241 1.33419 0.86504 0.80062 0.82560 0.78342 1.20630 1.21096 1.19807 1.22823 0.92749 0.93955 0.90075 1.67420 1.40807 0.98779 1.19312 0.88764 0.92261 0.92171 0.84229 0.84119 0.89477 0.89127 0.92332 0.91576 0.90058 0.94482 0.89837 0.91861 0.97123 0.88966 0.94845 0.92676 0.80700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.38 101.05 1.05 1.42 16 2 O -0.31 -3.72 10.48 -18.73 -0.20 -3.92 16 3 C 0.32 4.11 7.49 -17.12 -0.13 3.98 16 4 C -0.20 -2.14 10.04 -39.28 -0.39 -2.53 16 5 C -0.03 -0.27 9.58 -39.31 -0.38 -0.64 16 6 C -0.20 -2.39 5.48 -104.47 -0.57 -2.97 16 7 C 0.18 2.03 5.47 -5.19 -0.03 2.00 16 8 N -1.01 -14.66 3.23 -123.05 -0.40 -15.06 16 9 C 0.09 1.13 10.68 59.85 0.64 1.77 16 10 S 2.78 53.17 6.06 -107.50 -0.65 52.52 16 11 O -0.97 -22.56 15.30 -57.17 -0.88 -23.43 16 12 O -0.99 -19.00 13.90 -57.17 -0.79 -19.79 16 13 N -0.99 -19.89 3.12 -115.85 -0.36 -20.25 16 14 C 0.10 1.62 9.65 59.85 0.58 2.20 16 15 C 0.27 6.40 2.62 -69.08 -0.18 6.22 16 16 H 0.06 1.52 6.91 -51.93 -0.36 1.16 16 17 C -0.15 -3.21 8.97 37.16 0.33 -2.88 16 18 C -0.52 -13.82 7.99 -34.44 -0.28 -14.09 16 19 H 0.06 1.65 7.33 -52.49 -0.38 1.27 16 20 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 21 N -0.89 -24.42 11.32 55.43 0.63 -23.79 16 22 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 26 C 0.16 2.24 10.45 -17.57 -0.18 2.05 16 27 N -0.54 -7.72 9.22 -13.33 -0.12 -7.84 16 28 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 30 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 31 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.14 1.01 7.90 -52.49 -0.41 0.60 16 33 H 0.09 0.75 8.06 -51.93 -0.42 0.33 16 34 H 0.09 0.99 7.56 -51.93 -0.39 0.60 16 35 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 36 H 0.07 0.64 7.64 -51.93 -0.40 0.25 16 37 H 0.08 1.20 7.02 -51.93 -0.36 0.84 16 38 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 1.50 7.02 -51.93 -0.36 1.14 16 40 H 0.06 0.99 7.02 -51.92 -0.36 0.62 16 41 H 0.01 0.19 8.14 -51.92 -0.42 -0.23 16 42 H 0.09 2.26 6.07 -51.93 -0.32 1.95 16 43 H 0.03 0.70 7.67 -51.93 -0.40 0.30 16 44 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 45 H 0.18 2.53 6.64 -52.49 -0.35 2.18 16 LS Contribution 379.57 15.07 5.72 5.72 Total: -1.00 -32.49 379.57 -8.32 -40.81 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -6.61 Total: 1.01 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: 0.37 Total: -1.85 kcal Atomic # 7 Polarization: -66.69 SS G_CDS: -0.25 Total: -66.95 kcal Atomic # 8 Polarization: -45.28 SS G_CDS: -1.87 Total: -47.14 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 53.17 SS G_CDS: -0.65 Total: 52.52 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.49 -8.32 -40.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619750836.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.572 kcal (2) G-P(sol) polarization free energy of solvation -32.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds