Wall clock time and date at job start Wed Apr 1 2020 01:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35676 * 116.99916 * 2 1 4 4 C 1.38917 * 119.68428 * 180.02562 * 3 2 1 5 5 C 1.38381 * 119.11568 * 179.97438 * 4 3 2 6 6 C 1.38827 * 118.47953 * 0.02562 * 5 4 3 7 7 C 1.50709 * 120.35299 * 179.97438 * 6 5 4 8 8 N 1.46498 * 109.47113 * 89.99670 * 7 6 5 9 9 C 1.46498 * 119.99874 * 274.99977 * 8 7 6 10 10 S 1.65595 * 119.99850 * 95.00266 * 8 7 6 11 11 O 1.42105 * 106.40149 * 203.53728 * 10 8 7 12 12 O 1.42098 * 106.40317 * 336.45602 * 10 8 7 13 13 N 1.65606 * 107.22013 * 89.99911 * 10 8 7 14 14 C 1.46504 * 119.99819 * 269.99910 * 13 10 8 15 15 C 1.46489 * 120.00129 * 89.99663 * 13 10 8 16 16 H 1.09006 * 109.47494 * 0.02562 * 15 13 10 17 17 C 1.53001 * 109.47367 * 239.99892 * 15 13 10 18 18 C 1.50706 * 109.47403 * 120.00178 * 15 13 10 19 19 H 1.07999 * 119.99433 * 359.97438 * 18 15 13 20 20 C 1.37871 * 120.00236 * 179.97438 * 18 15 13 21 21 N 1.31509 * 120.00376 * 0.02562 * 20 18 15 22 22 Si 1.86802 * 119.99846 * 179.97438 * 20 18 15 23 23 H 1.48508 * 109.47019 * 90.00103 * 22 20 18 24 24 H 1.48501 * 109.47000 * 210.00061 * 22 20 18 25 25 H 1.48501 * 109.47230 * 330.00284 * 22 20 18 26 26 C 1.38049 * 119.29441 * 0.24757 * 6 5 4 27 27 N 1.31960 * 120.82916 * 359.45893 * 26 6 5 28 28 H 1.09000 * 109.47083 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46964 * 299.99810 * 1 2 3 30 30 H 1.08994 * 109.47144 * 59.99768 * 1 2 3 31 31 H 1.08002 * 120.44387 * 0.02562 * 4 3 2 32 32 H 1.08000 * 120.76301 * 180.02562 * 5 4 3 33 33 H 1.08996 * 109.46757 * 329.99113 * 7 6 5 34 34 H 1.09003 * 109.46750 * 209.99729 * 7 6 5 35 35 H 1.09009 * 109.46956 * 270.00331 * 9 8 7 36 36 H 1.08994 * 109.47112 * 30.00030 * 9 8 7 37 37 H 1.09001 * 109.47155 * 150.00738 * 9 8 7 38 38 H 1.08999 * 109.47095 * 89.99844 * 14 13 10 39 39 H 1.08991 * 109.46942 * 210.00257 * 14 13 10 40 40 H 1.09009 * 109.46796 * 329.99896 * 14 13 10 41 41 H 1.09010 * 109.46956 * 60.00176 * 17 15 13 42 42 H 1.09001 * 109.47294 * 179.97438 * 17 15 13 43 43 H 1.08997 * 109.47095 * 300.00351 * 17 15 13 44 44 H 0.96998 * 120.00587 * 179.97438 * 21 20 18 45 45 H 1.08000 * 119.58293 * 179.72708 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2740 -0.0005 5 6 4.0486 2.5131 -0.0011 6 6 3.2505 3.6491 -0.0005 7 6 3.8768 5.0199 -0.0005 8 7 4.0793 5.4643 -1.3817 9 6 5.2867 5.0664 -2.1096 10 16 2.9433 6.4164 -2.1200 11 8 3.1067 6.2248 -3.5185 12 8 1.7179 6.1788 -1.4409 13 7 3.3501 7.9922 -1.8133 14 6 2.8250 8.6659 -0.6230 15 6 4.2349 8.7124 -2.7321 16 1 4.5210 8.0538 -3.5523 17 6 5.4882 9.1673 -1.9818 18 6 3.5147 9.9162 -3.2831 19 1 2.4993 10.1236 -2.9794 20 6 4.1522 10.7525 -4.1747 21 7 5.3885 10.4997 -4.5449 22 14 3.2592 12.2442 -4.8581 23 1 3.4987 13.4127 -3.9735 24 1 3.7665 12.5431 -6.2214 25 1 1.8026 11.9625 -4.9227 26 6 1.8771 3.5097 0.0058 27 7 1.3186 2.3141 0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 4.0229 0.3695 -0.0014 32 1 5.1255 2.5947 -0.0019 33 1 4.8374 4.9803 0.5131 34 1 3.2185 5.7201 0.5138 35 1 6.0690 5.8084 -1.9488 36 1 5.6263 4.0962 -1.7472 37 1 5.0634 4.9988 -3.1743 38 1 3.5110 8.5174 0.2109 39 1 2.7231 9.7322 -0.8243 40 1 1.8500 8.2491 -0.3701 41 1 6.0092 8.2966 -1.5833 42 1 6.1468 9.7028 -2.6656 43 1 5.2019 9.8260 -1.1619 44 1 5.8369 11.0878 -5.1725 45 1 1.2518 4.3903 0.0107 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619750836.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:36 Heat of formation + Delta-G solvation = -89.679736 kcal Electronic energy + Delta-G solvation = -29074.310419 eV Core-core repulsion = 25025.808647 eV Total energy + Delta-G solvation = -4048.501771 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.64642 -39.20548 -38.34893 -37.84869 -37.15793 -36.83875 -34.50722 -33.50415 -32.26430 -30.89264 -28.86668 -27.66571 -27.22106 -26.96952 -25.78040 -24.29733 -22.97074 -22.49500 -19.82406 -19.38744 -18.88805 -18.61812 -18.19263 -17.83759 -17.34319 -17.00519 -16.78186 -16.36709 -15.75460 -15.51089 -15.26692 -15.14201 -14.89946 -14.61392 -14.34196 -14.29107 -14.07963 -13.90527 -13.72040 -13.43147 -13.34030 -13.14475 -13.06435 -12.98035 -12.71857 -12.68047 -12.62543 -12.59637 -12.41820 -12.19740 -12.12409 -12.08910 -11.87744 -11.14836 -10.88733 -10.69920 -10.49576 -10.06141 -9.63862 -9.44274 -8.11369 -6.24490 -0.38925 0.14028 0.29314 1.41638 1.44129 1.53178 2.06404 2.13266 2.42498 2.55047 2.81173 3.16914 3.31918 3.44507 3.77601 3.81260 4.06481 4.10006 4.21345 4.25026 4.39058 4.43365 4.49955 4.64230 4.73172 4.75755 4.77784 4.80498 4.83243 4.93118 4.97606 5.01410 5.07405 5.10654 5.18215 5.29712 5.32405 5.47239 5.56283 5.62635 5.82243 5.91711 6.17747 6.19676 6.32292 6.83032 6.83131 7.44232 8.92614 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.025390 B = 0.002888 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.545848 B = 9693.339671 C =10054.674144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.319 6.319 3 C 0.295 3.705 4 C -0.194 4.194 5 C -0.016 4.016 6 C -0.201 4.201 7 C 0.172 3.828 8 N -1.001 6.001 9 C 0.081 3.919 10 S 2.785 3.215 11 O -1.020 7.020 12 O -0.999 6.999 13 N -0.997 5.997 14 C 0.091 3.909 15 C 0.274 3.726 16 H 0.022 0.978 17 C -0.132 4.132 18 C -0.540 4.540 19 H 0.055 0.945 20 C 0.019 3.981 21 N -0.912 5.912 22 Si 0.952 3.048 23 H -0.268 1.268 24 H -0.284 1.284 25 H -0.276 1.276 26 C 0.135 3.865 27 N -0.565 5.565 28 H 0.126 0.874 29 H 0.055 0.945 30 H 0.047 0.953 31 H 0.166 0.834 32 H 0.182 0.818 33 H 0.130 0.870 34 H 0.094 0.906 35 H 0.066 0.934 36 H 0.108 0.892 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.039 0.961 42 H 0.065 0.935 43 H 0.040 0.960 44 H 0.264 0.736 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.553 -16.541 13.956 21.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.226 6.226 3 C 0.116 3.884 4 C -0.214 4.214 5 C -0.042 4.042 6 C -0.205 4.205 7 C 0.047 3.953 8 N -0.841 5.841 9 C -0.064 4.064 10 S 2.795 3.205 11 O -1.004 7.004 12 O -0.983 6.983 13 N -0.838 5.838 14 C -0.055 4.055 15 C 0.170 3.830 16 H 0.040 0.960 17 C -0.192 4.192 18 C -0.580 4.580 19 H 0.073 0.927 20 C -0.181 4.181 21 N -0.551 5.551 22 Si 0.778 3.222 23 H -0.193 1.193 24 H -0.209 1.209 25 H -0.201 1.201 26 C -0.021 4.021 27 N -0.289 5.289 28 H 0.144 0.856 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.184 0.816 32 H 0.199 0.801 33 H 0.148 0.852 34 H 0.112 0.888 35 H 0.084 0.916 36 H 0.126 0.874 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.058 0.942 42 H 0.083 0.917 43 H 0.059 0.941 44 H 0.074 0.926 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.858 -17.123 13.329 21.716 hybrid contribution 0.146 1.286 -0.725 1.483 sum -0.713 -15.837 12.604 20.253 Atomic orbital electron populations 1.23016 0.76244 1.04587 1.01918 1.86206 1.24048 1.24445 1.87929 1.20362 0.90656 0.84747 0.92666 1.21417 0.91223 1.00950 1.07792 1.21757 1.02112 0.89460 0.90850 1.21296 0.94457 0.98256 1.06517 1.20247 1.03316 0.90647 0.81117 1.57826 1.36837 1.65361 1.24102 1.21707 0.85802 1.02821 0.96026 1.01596 0.73541 0.72959 0.72374 1.93523 1.87035 1.86203 1.33665 1.93469 1.43190 1.85583 1.76036 1.57616 1.63003 1.28427 1.34803 1.21497 0.98548 0.99571 0.85847 1.18371 0.87408 0.90967 0.86288 0.95982 1.21889 0.98335 0.99501 0.99457 1.21674 0.99892 1.10104 1.26302 0.92690 1.25602 0.95701 1.00444 0.96375 1.69960 1.12283 1.39081 1.33810 0.85649 0.78683 0.80009 0.77857 1.19348 1.20926 1.20122 1.22761 0.93898 0.93544 0.91920 1.67312 1.41951 0.99356 1.20270 0.85626 0.92597 0.93387 0.81624 0.80071 0.85224 0.88814 0.91573 0.87360 0.92688 0.91044 0.91303 0.90844 0.94219 0.91674 0.94070 0.92625 0.82329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 10.38 113.37 1.18 1.85 16 2 O -0.32 -7.32 10.48 -89.94 -0.94 -8.26 16 3 C 0.29 7.35 7.49 84.79 0.63 7.99 16 4 C -0.19 -3.64 10.04 22.47 0.23 -3.41 16 5 C -0.02 -0.27 9.58 22.44 0.21 -0.05 16 6 C -0.20 -4.34 5.48 -19.77 -0.11 -4.45 16 7 C 0.17 3.35 5.47 85.64 0.47 3.82 16 8 N -1.00 -26.94 3.23 -543.22 -1.75 -28.69 16 9 C 0.08 1.91 10.68 127.77 1.36 3.27 16 10 S 2.78 106.67 6.06 -56.49 -0.34 106.33 16 11 O -1.02 -49.00 15.30 -128.00 -1.96 -50.96 16 12 O -1.00 -38.41 13.90 -128.00 -1.78 -40.18 16 13 N -1.00 -39.81 3.12 -520.44 -1.62 -41.43 16 14 C 0.09 2.97 9.65 127.77 1.23 4.20 16 15 C 0.27 13.22 2.62 44.25 0.12 13.34 16 16 H 0.02 1.23 6.91 -2.38 -0.02 1.21 16 17 C -0.13 -5.71 8.97 71.98 0.65 -5.06 16 18 C -0.54 -29.12 7.99 25.60 0.20 -28.92 16 19 H 0.05 2.96 7.33 -2.91 -0.02 2.94 16 20 C 0.02 1.01 5.30 84.65 0.45 1.46 16 21 N -0.91 -50.75 11.32 21.44 0.24 -50.50 16 22 Si 0.95 43.14 29.54 68.60 2.03 45.17 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 24 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 26 C 0.13 3.72 10.45 84.63 0.88 4.60 16 27 N -0.57 -16.18 9.22 -308.95 -2.85 -19.02 16 28 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.06 1.03 8.10 -2.39 -0.02 1.01 16 30 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 31 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 32 H 0.18 1.46 7.90 -2.91 -0.02 1.43 16 33 H 0.13 1.51 8.06 -2.39 -0.02 1.49 16 34 H 0.09 1.80 7.56 -2.39 -0.02 1.78 16 35 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.11 1.61 7.64 -2.39 -0.02 1.59 16 37 H 0.05 1.60 7.02 -2.39 -0.02 1.59 16 38 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.07 2.44 7.02 -2.39 -0.02 2.43 16 40 H 0.07 2.22 7.02 -2.38 -0.02 2.20 16 41 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 42 H 0.06 3.19 6.07 -2.39 -0.01 3.18 16 43 H 0.04 1.66 7.67 -2.39 -0.02 1.65 16 44 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 45 H 0.16 4.73 6.64 -2.91 -0.02 4.71 16 Total: -1.00 -73.53 379.57 -0.47 -74.01 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.99 Total: 14.91 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: 7.51 Total: -1.36 kcal Atomic # 7 Polarization: -133.67 SS G_CDS: -5.98 Total: -139.65 kcal Atomic # 8 Polarization: -94.72 SS G_CDS: -4.68 Total: -99.40 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: 106.67 SS G_CDS: -0.34 Total: 106.33 kcal Total: -73.53 -0.47 -74.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619750836.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.672 kcal (2) G-P(sol) polarization free energy of solvation -73.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds