Wall clock time and date at job start Wed Apr 1 2020 02:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81406 * 109.46959 * 2 1 4 4 O 1.42098 * 110.54428 * 68.37605 * 3 2 1 5 5 O 1.42099 * 110.53858 * 291.61913 * 3 2 1 6 6 N 1.65598 * 104.44607 * 179.97438 * 3 2 1 7 7 C 1.34784 * 119.99936 * 64.99980 * 6 3 2 8 8 O 1.21281 * 120.00093 * 359.97438 * 7 6 3 9 9 C 1.50696 * 119.99865 * 179.97438 * 7 6 3 10 10 C 1.53000 * 109.47110 * 179.97438 * 9 7 6 11 11 C 1.50706 * 109.47116 * 179.97438 * 10 9 7 12 12 C 1.39862 * 126.04094 * 269.68901 * 11 10 9 13 13 C 1.50702 * 125.90180 * 0.02562 * 12 11 10 14 14 N 1.30842 * 108.19992 * 179.81747 * 12 11 10 15 15 N 1.40084 * 108.20663 * 0.44091 * 14 12 11 16 16 C 1.46495 * 126.04013 * 179.73793 * 15 14 12 17 17 C 1.50699 * 109.47131 * 269.98016 * 16 15 14 18 18 H 1.08002 * 119.99767 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00208 * 179.97438 * 17 16 15 20 20 N 1.31511 * 119.99755 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00053 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47367 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47238 * 119.99996 * 21 19 17 24 24 H 1.48507 * 109.47262 * 239.99788 * 21 19 17 25 25 C 1.34950 * 107.92381 * 359.71898 * 15 14 12 26 26 C 1.50694 * 126.12576 * 179.97438 * 25 15 14 27 27 H 1.08999 * 109.47471 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47112 * 300.00319 * 1 2 3 29 29 H 1.08997 * 109.47251 * 60.00238 * 1 2 3 30 30 H 1.08997 * 109.47308 * 239.99637 * 2 1 3 31 31 H 1.08998 * 109.46689 * 119.99254 * 2 1 3 32 32 H 0.96998 * 120.00486 * 244.99386 * 6 3 2 33 33 H 1.09000 * 109.47543 * 59.99570 * 9 7 6 34 34 H 1.09008 * 109.47338 * 300.00084 * 9 7 6 35 35 H 1.09000 * 109.46884 * 60.00335 * 10 9 7 36 36 H 1.09000 * 109.46955 * 299.99651 * 10 9 7 37 37 H 1.08998 * 109.47393 * 89.99256 * 13 12 11 38 38 H 1.09001 * 109.46747 * 209.99996 * 13 12 11 39 39 H 1.08998 * 109.46776 * 329.99757 * 13 12 11 40 40 H 1.09001 * 109.47188 * 29.97306 * 16 15 14 41 41 H 1.08997 * 109.47530 * 149.97532 * 16 15 14 42 42 H 0.96999 * 120.00262 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.47170 * 270.02464 * 26 25 15 44 44 H 1.09004 * 109.47112 * 30.02444 * 26 25 15 45 45 H 1.09003 * 109.46820 * 150.02019 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8385 2.3439 1.2370 5 8 1.8386 2.3438 -1.2371 6 7 3.7842 1.5653 0.0007 7 6 4.4128 1.0147 -1.0568 8 8 3.7702 0.6251 -2.0088 9 6 5.9140 0.8833 -1.0564 10 6 6.3692 0.2305 -2.3631 11 6 7.8706 0.0996 -2.3630 12 6 8.7791 1.0462 -2.8474 13 6 8.4263 2.3768 -3.4607 14 7 9.9886 0.5789 -2.6719 15 7 9.8873 -0.6861 -2.0787 16 6 11.0056 -1.5602 -1.7165 17 6 11.3372 -2.4598 -2.8792 18 1 10.7711 -2.3878 -3.7961 19 6 12.3632 -3.3747 -2.7724 20 7 13.0528 -3.4619 -1.6560 21 14 12.7737 -4.4901 -4.2134 22 1 11.8567 -4.1962 -5.3439 23 1 14.1765 -4.2532 -4.6388 24 1 12.6138 -5.9084 -3.8029 25 6 8.5775 -0.9571 -1.8995 26 6 8.0048 -2.2119 -1.2926 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5137 0.8901 32 1 4.2982 1.8767 0.7621 33 1 6.2244 0.2648 -0.2143 34 1 6.3653 1.8716 -0.9671 35 1 6.0589 0.8487 -3.2055 36 1 5.9180 -0.7578 -2.4519 37 1 8.3795 3.1359 -2.6799 38 1 9.1866 2.6531 -4.1912 39 1 7.4574 2.3036 -3.9546 40 1 11.8758 -0.9528 -1.4675 41 1 10.7280 -2.1675 -0.8549 42 1 13.7744 -4.1058 -1.5806 43 1 7.8293 -2.9477 -2.0774 44 1 8.7080 -2.6173 -0.5650 45 1 7.0628 -1.9782 -0.7963 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732606488.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:33:03 Heat of formation + Delta-G solvation = -60.308227 kcal Electronic energy + Delta-G solvation = -27694.391885 eV Core-core repulsion = 23647.163758 eV Total energy + Delta-G solvation = -4047.228127 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.78637 -40.25782 -37.53023 -36.44010 -34.82500 -34.53807 -33.64199 -33.48904 -32.54507 -30.42304 -29.02091 -27.06994 -25.93668 -24.68154 -24.19612 -22.48558 -21.37855 -19.99807 -18.89971 -18.73883 -18.43499 -17.78652 -16.95494 -16.76017 -16.07869 -15.92989 -15.51142 -14.98489 -14.73687 -14.49428 -14.19522 -13.97746 -13.68080 -13.35878 -13.08294 -13.02715 -12.96568 -12.74020 -12.57286 -12.55132 -12.42899 -12.40024 -12.23683 -12.04531 -11.87695 -11.73364 -11.43204 -11.41471 -11.36438 -11.01646 -10.88414 -10.86445 -10.82985 -10.48862 -10.29339 -9.76306 -9.68337 -8.69780 -8.25289 -7.56636 -6.31305 -4.38599 -0.35810 1.77958 2.02877 2.69298 3.16439 3.20929 3.24762 3.28506 3.30153 3.54328 3.70237 4.00130 4.18941 4.25573 4.34687 4.56372 4.72171 4.99761 5.02248 5.04544 5.08643 5.23972 5.24412 5.30131 5.43816 5.55088 5.56034 5.72841 5.84107 5.90021 5.93347 5.96451 6.17176 6.23092 6.28106 6.31698 6.46386 6.75817 6.96850 7.05214 7.18087 7.44687 7.61707 7.83146 7.98688 8.60611 8.70307 9.28175 10.76384 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.020666 B = 0.002191 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.582985 B =12778.580972 C =13366.185676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.621 4.621 3 S 2.589 3.411 4 O -0.949 6.949 5 O -0.928 6.928 6 N -1.058 6.058 7 C 0.535 3.465 8 O -0.495 6.495 9 C -0.137 4.137 10 C -0.016 4.016 11 C -0.272 4.272 12 C 0.052 3.948 13 C -0.066 4.066 14 N -0.296 5.296 15 N -0.324 5.324 16 C 0.256 3.744 17 C -0.535 4.535 18 H 0.064 0.936 19 C 0.065 3.935 20 N -0.892 5.892 21 Si 0.906 3.094 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.281 1.281 25 C 0.095 3.905 26 C -0.087 4.087 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.144 0.856 31 H 0.134 0.866 32 H 0.435 0.565 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.052 0.948 41 H 0.051 0.949 42 H 0.268 0.732 43 H 0.078 0.922 44 H 0.073 0.927 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.498 6.725 7.013 23.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.752 4.752 3 S 2.684 3.316 4 O -0.939 6.939 5 O -0.919 6.919 6 N -0.823 5.823 7 C 0.323 3.677 8 O -0.366 6.366 9 C -0.179 4.179 10 C -0.055 4.055 11 C -0.284 4.284 12 C -0.112 4.112 13 C -0.125 4.125 14 N -0.120 5.120 15 N -0.103 5.103 16 C 0.139 3.861 17 C -0.574 4.574 18 H 0.083 0.917 19 C -0.138 4.138 20 N -0.530 5.530 21 Si 0.733 3.267 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.037 4.037 26 C -0.145 4.145 27 H 0.104 0.896 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.163 0.837 31 H 0.152 0.848 32 H 0.271 0.729 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.096 0.904 44 H 0.091 0.909 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.854 7.271 6.269 22.958 hybrid contribution 0.151 -1.430 -0.071 1.440 sum -20.704 5.841 6.198 22.387 Atomic orbital electron populations 1.21514 0.89957 1.05442 1.03559 1.30364 1.07686 1.24592 1.12543 1.05894 0.73206 0.77891 0.74600 1.93645 1.82238 1.72951 1.45101 1.93662 1.81872 1.71866 1.44458 1.55216 1.29693 1.69416 1.27954 1.21199 0.92813 0.73758 0.79921 1.90857 1.68060 1.45330 1.32367 1.21958 0.88228 1.04884 1.02834 1.19475 0.90440 1.00934 0.94646 1.19270 0.94938 0.97101 1.17109 1.21962 0.90786 0.97335 1.01127 1.20050 1.01552 0.91076 0.99828 1.77302 1.21116 0.95326 1.18221 1.49269 1.05812 1.12543 1.42702 1.19670 0.82253 0.87344 0.96870 1.21334 1.17625 1.18728 0.99674 0.91747 1.24932 0.95302 0.97083 0.96504 1.69922 1.21350 1.36076 1.25610 0.86301 0.78499 0.79906 0.81987 1.19556 1.20604 1.20641 1.20779 0.85466 0.96969 1.00490 1.20358 1.00124 0.93188 1.00813 0.89570 0.90923 0.90671 0.83747 0.84790 0.72874 0.87807 0.87678 0.90789 0.91076 0.91507 0.91494 0.91138 0.93035 0.93081 0.92282 0.90377 0.90862 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.92 37.16 0.37 -0.42 16 2 C -0.62 -3.71 6.60 37.16 0.25 -3.46 16 3 S 2.59 22.19 5.11 -107.50 -0.55 21.64 16 4 O -0.95 -9.80 18.08 -57.54 -1.04 -10.84 16 5 O -0.93 -11.97 17.04 -64.78 -1.10 -13.08 16 6 N -1.06 -7.32 5.60 31.22 0.17 -7.15 16 7 C 0.53 5.00 7.57 -10.98 -0.08 4.92 16 8 O -0.49 -6.14 14.09 -11.55 -0.16 -6.31 16 9 C -0.14 -1.24 5.68 -27.89 -0.16 -1.40 16 10 C -0.02 -0.20 4.41 -27.88 -0.12 -0.32 16 11 C -0.27 -4.45 5.35 -105.05 -0.56 -5.02 16 12 C 0.05 0.94 7.22 -82.41 -0.59 0.35 16 13 C -0.07 -0.89 10.26 36.01 0.37 -0.52 16 14 N -0.30 -6.54 12.58 33.67 0.42 -6.12 16 15 N -0.32 -7.24 3.60 -58.32 -0.21 -7.45 16 16 C 0.26 6.36 6.00 -5.20 -0.03 6.33 16 17 C -0.54 -14.45 9.39 -34.44 -0.32 -14.77 16 18 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 19 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -24.65 13.29 55.43 0.74 -23.91 16 21 Si 0.91 20.83 29.54 -169.99 -5.02 15.80 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 25 C 0.09 1.75 6.93 -82.26 -0.57 1.18 16 26 C -0.09 -1.28 9.72 36.00 0.35 -0.93 16 27 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.14 0.94 7.19 -51.93 -0.37 0.56 16 31 H 0.13 0.47 8.14 -51.92 -0.42 0.05 16 32 H 0.43 1.61 8.79 -34.47 -0.30 1.30 16 33 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.11 0.84 8.14 -51.92 -0.42 0.42 16 35 H 0.07 0.93 7.20 -51.93 -0.37 0.56 16 36 H 0.07 0.87 7.73 -51.93 -0.40 0.47 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.07 0.82 7.25 -51.93 -0.38 0.44 16 40 H 0.05 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.05 1.25 7.05 -51.93 -0.37 0.88 16 42 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.07 1.13 7.08 -51.93 -0.37 0.76 16 45 H 0.07 0.78 7.77 -51.93 -0.40 0.38 16 LS Contribution 392.35 15.07 5.91 5.91 Total: -1.00 -36.36 392.35 -8.79 -45.14 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -6.74 Total: -1.24 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -1.21 Total: -12.42 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: 1.13 Total: -44.62 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -2.31 Total: -30.22 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 22.19 SS G_CDS: -0.55 Total: 21.64 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.36 -8.79 -45.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732606488.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.164 kcal (2) G-P(sol) polarization free energy of solvation -36.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds