Wall clock time and date at job start Wed Apr 1 2020 01:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47358 * 2 1 4 4 C 1.50701 * 109.47484 * 239.99090 * 2 1 3 5 5 H 1.07996 * 120.00004 * 245.29762 * 4 2 1 6 6 C 1.37883 * 119.99358 * 65.29858 * 4 2 1 7 7 N 1.31514 * 119.99708 * 185.72747 * 6 4 2 8 8 Si 1.86799 * 120.00233 * 6.00955 * 6 4 2 9 9 H 1.48501 * 109.46848 * 269.71883 * 8 6 4 10 10 H 1.48496 * 109.47267 * 29.72114 * 8 6 4 11 11 H 1.48506 * 109.46968 * 149.72273 * 8 6 4 12 12 N 1.46498 * 109.46927 * 119.99345 * 2 1 3 13 13 C 1.46502 * 120.00215 * 59.99927 * 12 2 1 14 14 C 1.34780 * 120.00423 * 240.00251 * 12 2 1 15 15 O 1.21360 * 119.99709 * 5.51089 * 14 12 2 16 16 C 1.49335 * 120.00234 * 185.50997 * 14 12 2 17 17 O 1.21386 * 119.99931 * 5.75890 * 16 14 12 18 18 N 1.34776 * 120.00222 * 185.74958 * 16 14 12 19 19 C 1.39827 * 120.00186 * 184.57960 * 18 16 14 20 20 C 1.39434 * 120.42762 * 324.62343 * 19 18 16 21 21 C 1.38301 * 118.41901 * 179.75739 * 20 19 18 22 22 C 1.38979 * 119.18335 * 0.52343 * 21 20 19 23 23 N 1.39915 * 119.60087 * 179.74548 * 22 21 20 24 24 C 1.37146 * 126.48316 * 184.69223 * 23 22 21 25 25 C 1.34632 * 106.83034 * 179.83979 * 24 23 22 26 26 N 1.34143 * 108.21056 * 0.42143 * 25 24 23 27 27 C 1.30497 * 109.36541 * 359.73251 * 26 25 24 28 28 N 1.32275 * 120.79433 * 359.72021 * 22 21 20 29 29 C 1.31849 * 121.72713 * 0.02562 * 28 22 21 30 30 H 1.09010 * 109.46512 * 54.45385 * 1 2 3 31 31 H 1.08997 * 109.47339 * 174.45129 * 1 2 3 32 32 H 1.08995 * 109.47514 * 294.45813 * 1 2 3 33 33 H 0.97006 * 119.99649 * 355.25723 * 7 6 4 34 34 H 1.09002 * 109.47116 * 95.58848 * 13 12 2 35 35 H 1.09001 * 109.47569 * 215.59351 * 13 12 2 36 36 H 1.09003 * 109.46825 * 335.59342 * 13 12 2 37 37 H 0.96996 * 119.99679 * 4.58576 * 18 16 14 38 38 H 1.07993 * 120.79170 * 0.02562 * 20 19 18 39 39 H 1.08000 * 120.41010 * 180.25967 * 21 20 19 40 40 H 1.08006 * 126.58579 * 359.95465 * 24 23 22 41 41 H 1.08003 * 125.89277 * 180.14845 * 25 24 23 42 42 H 1.07994 * 125.72037 * 179.97438 * 27 26 25 43 43 H 1.08000 * 119.63786 * 180.02562 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.5809 -1.6358 -1.1334 6 6 1.7917 -0.1793 -2.4797 7 7 2.1301 -0.8534 -3.5571 8 14 0.9924 1.5012 -2.6420 9 1 -0.4829 1.3435 -2.7045 10 1 1.3517 2.3358 -1.4675 11 1 1.4728 2.1600 -3.8832 12 7 2.0183 -0.6905 1.1962 13 6 1.6643 -2.0930 1.4283 14 6 2.7931 -0.0354 2.0835 15 8 3.0041 1.1516 1.9445 16 6 3.3919 -0.7702 3.2374 17 8 3.2683 -1.9750 3.3198 18 7 4.0697 -0.0958 4.1873 19 6 4.7116 -0.7924 5.2158 20 6 4.1482 -1.9553 5.7399 21 6 4.8211 -2.6139 6.7529 22 6 6.0221 -2.0927 7.2193 23 7 6.7073 -2.7490 8.2475 24 6 7.8483 -2.3158 8.8732 25 6 8.1628 -3.2438 9.7966 26 7 7.2484 -4.2234 9.7348 27 6 6.3715 -3.9391 8.8112 28 7 6.5253 -0.9840 6.7024 29 6 5.9149 -0.3319 5.7325 30 1 -0.3633 0.5975 -0.8363 31 1 -0.3634 -1.0228 -0.0994 32 1 -0.3634 0.4255 0.9354 33 1 2.6105 -1.6920 -3.4736 34 1 2.4642 -2.7354 1.0597 35 1 1.5264 -2.2611 2.4964 36 1 0.7391 -2.3262 0.9013 37 1 4.1122 0.8727 4.1574 38 1 3.2111 -2.3350 5.3607 39 1 4.4160 -3.5197 7.1793 40 1 8.3895 -1.4043 8.6664 41 1 9.0080 -3.2079 10.4680 42 1 5.5216 -4.5478 8.5400 43 1 6.3564 0.5700 5.3350 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784445580.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:39 Heat of formation + Delta-G solvation = 64.528047 kcal Electronic energy + Delta-G solvation = -28684.751167 eV Core-core repulsion = 24539.785147 eV Total energy + Delta-G solvation = -4144.966020 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.70219 -41.36125 -40.13535 -38.46614 -36.38828 -35.49178 -33.88663 -32.89084 -32.85024 -30.48038 -30.05949 -29.37588 -26.62413 -25.58452 -24.83746 -24.60900 -23.60744 -21.74195 -21.34158 -20.85992 -19.51993 -19.17941 -18.10664 -17.75532 -17.39864 -16.71238 -16.32672 -16.07726 -15.94003 -15.61511 -15.34056 -14.51365 -14.42369 -14.24400 -14.14166 -14.07409 -13.87970 -13.62112 -13.32763 -13.16097 -12.97331 -12.74978 -12.23560 -11.95408 -11.83573 -11.68380 -11.48013 -11.12120 -10.69716 -10.67621 -10.52647 -10.40097 -10.17646 -10.04718 -9.86237 -9.23194 -9.06918 -9.01369 -8.63125 -8.50869 -8.11047 -6.60614 -4.30679 0.13132 0.64741 1.41866 1.86337 1.99505 2.31291 2.75172 3.19542 3.25366 3.36435 3.37053 3.48417 3.59818 3.79904 4.10091 4.23239 4.30902 4.32744 4.36998 4.46104 4.69810 4.98657 5.07432 5.12328 5.19298 5.31005 5.45705 5.57750 5.68414 5.77864 5.93392 6.08205 6.09832 6.18698 6.27201 6.30558 6.35904 6.64642 6.68220 6.71517 6.88038 7.04221 7.24459 7.47212 7.60015 7.60674 7.92330 8.17760 8.25327 8.70418 9.40354 10.77867 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.030561 B = 0.002025 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.992877 B =13822.995184 C =14061.212867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.225 3.775 3 H 0.066 0.934 4 C -0.608 4.608 5 H 0.063 0.937 6 C 0.034 3.966 7 N -0.902 5.902 8 Si 1.049 2.951 9 H -0.281 1.281 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.544 5.544 13 C 0.086 3.914 14 C 0.496 3.504 15 O -0.534 6.534 16 C 0.512 3.488 17 O -0.496 6.496 18 N -0.646 5.646 19 C 0.095 3.905 20 C -0.051 4.051 21 C -0.155 4.155 22 C 0.321 3.679 23 N -0.407 5.407 24 C -0.026 4.026 25 C -0.033 4.033 26 N -0.480 5.480 27 C 0.192 3.808 28 N -0.476 5.476 29 C 0.116 3.884 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.033 0.967 33 H 0.269 0.731 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.428 0.572 38 H 0.163 0.837 39 H 0.148 0.852 40 H 0.182 0.818 41 H 0.176 0.824 42 H 0.212 0.788 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.334 -1.014 22.704 23.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.124 3.876 3 H 0.084 0.916 4 C -0.646 4.646 5 H 0.082 0.918 6 C -0.172 4.172 7 N -0.536 5.536 8 Si 0.877 3.123 9 H -0.207 1.207 10 H -0.200 1.200 11 H -0.212 1.212 12 N -0.274 5.274 13 C -0.057 4.057 14 C 0.277 3.723 15 O -0.413 6.413 16 C 0.295 3.705 17 O -0.369 6.369 18 N -0.294 5.294 19 C -0.003 4.003 20 C -0.079 4.079 21 C -0.178 4.178 22 C 0.093 3.907 23 N -0.089 5.089 24 C -0.156 4.156 25 C -0.178 4.178 26 N -0.197 5.197 27 C -0.090 4.090 28 N -0.187 5.187 29 C -0.045 4.045 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.266 0.734 38 H 0.181 0.819 39 H 0.166 0.834 40 H 0.199 0.801 41 H 0.193 0.807 42 H 0.228 0.772 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 4.493 -0.526 22.230 22.685 hybrid contribution 0.000 -0.438 0.114 0.452 sum 4.493 -0.964 22.344 22.811 Atomic orbital electron populations 1.22418 0.98235 1.01612 0.99513 1.19661 0.90801 0.95301 0.81799 0.91630 1.22211 1.40782 1.10942 0.90665 0.91834 1.25729 0.96250 1.03571 0.91614 1.70821 1.36350 1.16245 1.30152 0.83951 0.76390 0.75580 0.76354 1.20739 1.19982 1.21191 1.47995 1.45280 1.12788 1.21364 1.21934 1.01370 0.81127 1.01295 1.19497 0.81945 0.87201 0.83700 1.90734 1.60931 1.14369 1.75248 1.20944 0.78714 0.87664 0.83149 1.90720 1.55801 1.14144 1.76218 1.43156 1.50964 1.11765 1.23517 1.18814 0.93918 0.95908 0.91638 1.21689 1.00386 0.93505 0.92307 1.21497 0.94544 1.02525 0.99184 1.18160 0.90580 0.91513 0.90434 1.43098 1.21221 1.18037 1.26515 1.22947 0.90840 1.03287 0.98507 1.22404 1.01275 0.92203 1.01887 1.70340 1.04325 1.27073 1.17944 1.25344 1.02230 0.86616 0.94800 1.66945 1.33619 1.06944 1.11233 1.22462 0.89635 0.99803 0.92604 0.92387 0.92455 0.94775 0.92064 0.92381 0.90802 0.90882 0.73352 0.81943 0.83418 0.80113 0.80702 0.77194 0.80935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 8.66 37.16 0.32 -2.85 16 2 C 0.23 5.10 2.20 -69.08 -0.15 4.95 16 3 H 0.07 1.60 5.40 -51.93 -0.28 1.32 16 4 C -0.61 -16.02 8.76 -34.44 -0.30 -16.32 16 5 H 0.06 1.81 7.79 -52.49 -0.41 1.40 16 6 C 0.03 0.94 5.43 -17.82 -0.10 0.85 16 7 N -0.90 -26.53 13.70 55.43 0.76 -25.77 16 8 Si 1.05 24.18 25.32 -169.99 -4.30 19.87 16 9 H -0.28 -6.03 6.81 56.52 0.38 -5.64 16 10 H -0.27 -6.01 6.35 56.52 0.36 -5.65 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 N -0.54 -10.68 2.75 -175.81 -0.48 -11.16 16 13 C 0.09 1.44 8.37 59.85 0.50 1.94 16 14 C 0.50 8.97 7.72 -11.64 -0.09 8.88 16 15 O -0.53 -10.63 15.84 5.49 0.09 -10.54 16 16 C 0.51 7.33 7.55 -11.64 -0.09 7.24 16 17 O -0.50 -7.38 10.88 5.47 0.06 -7.32 16 18 N -0.65 -7.00 5.33 -10.18 -0.05 -7.06 16 19 C 0.10 0.94 6.31 -83.55 -0.53 0.41 16 20 C -0.05 -0.49 8.80 -39.11 -0.34 -0.83 16 21 C -0.15 -1.29 9.50 -39.28 -0.37 -1.67 16 22 C 0.32 3.18 7.50 -154.29 -1.16 2.02 16 23 N -0.41 -3.98 2.98 -63.80 -0.19 -4.17 16 24 C -0.03 -0.24 11.17 -16.45 -0.18 -0.42 16 25 C -0.03 -0.31 11.85 -17.82 -0.21 -0.52 16 26 N -0.48 -5.27 11.24 -14.47 -0.16 -5.43 16 27 C 0.19 1.74 11.89 -89.59 -1.07 0.67 16 28 N -0.48 -4.88 9.88 -12.10 -0.12 -5.00 16 29 C 0.12 1.04 11.12 -17.33 -0.19 0.85 16 30 H 0.06 1.17 4.46 -51.92 -0.23 0.94 16 31 H 0.06 1.09 6.89 -51.93 -0.36 0.73 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.27 7.90 8.72 -40.82 -0.36 7.54 16 34 H 0.06 1.03 8.09 -51.93 -0.42 0.61 16 35 H 0.07 1.07 5.98 -51.93 -0.31 0.76 16 36 H 0.07 1.20 6.55 -51.93 -0.34 0.86 16 37 H 0.43 3.92 8.32 -40.82 -0.34 3.58 16 38 H 0.16 1.58 6.35 -52.49 -0.33 1.25 16 39 H 0.15 0.80 6.77 -52.49 -0.36 0.45 16 40 H 0.18 1.40 8.06 -52.48 -0.42 0.98 16 41 H 0.18 1.18 8.06 -52.48 -0.42 0.76 16 42 H 0.21 1.11 7.06 -52.49 -0.37 0.74 16 43 H 0.17 1.11 8.06 -52.49 -0.42 0.68 16 LS Contribution 359.73 15.07 5.42 5.42 Total: -1.00 -33.11 359.73 -7.60 -40.71 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -4.65 Total: 5.24 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: -3.96 Total: 5.20 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: -0.25 Total: -58.59 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: 0.15 Total: -17.86 kcal Atomic # 14 Polarization: 24.18 SS G_CDS: -4.30 Total: 19.87 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.11 -7.60 -40.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784445580.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.237 kcal (2) G-P(sol) polarization free energy of solvation -33.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds