Wall clock time and date at job start Wed Apr 1 2020 01:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47358 * 2 1 4 4 C 1.50701 * 109.47484 * 239.99090 * 2 1 3 5 5 H 1.07996 * 120.00004 * 245.29762 * 4 2 1 6 6 C 1.37883 * 119.99358 * 65.29858 * 4 2 1 7 7 N 1.31514 * 119.99708 * 185.72747 * 6 4 2 8 8 Si 1.86799 * 120.00233 * 6.00955 * 6 4 2 9 9 H 1.48501 * 109.46848 * 269.71883 * 8 6 4 10 10 H 1.48496 * 109.47267 * 29.72114 * 8 6 4 11 11 H 1.48506 * 109.46968 * 149.72273 * 8 6 4 12 12 N 1.46498 * 109.46927 * 119.99345 * 2 1 3 13 13 C 1.46502 * 120.00215 * 59.99927 * 12 2 1 14 14 C 1.34780 * 120.00423 * 240.00251 * 12 2 1 15 15 O 1.21360 * 119.99709 * 5.51089 * 14 12 2 16 16 C 1.49335 * 120.00234 * 185.50997 * 14 12 2 17 17 O 1.21386 * 119.99931 * 5.75890 * 16 14 12 18 18 N 1.34776 * 120.00222 * 185.74958 * 16 14 12 19 19 C 1.39827 * 120.00186 * 184.57960 * 18 16 14 20 20 C 1.39434 * 120.42762 * 324.62343 * 19 18 16 21 21 C 1.38301 * 118.41901 * 179.75739 * 20 19 18 22 22 C 1.38979 * 119.18335 * 0.52343 * 21 20 19 23 23 N 1.39915 * 119.60087 * 179.74548 * 22 21 20 24 24 C 1.37146 * 126.48316 * 184.69223 * 23 22 21 25 25 C 1.34632 * 106.83034 * 179.83979 * 24 23 22 26 26 N 1.34143 * 108.21056 * 0.42143 * 25 24 23 27 27 C 1.30497 * 109.36541 * 359.73251 * 26 25 24 28 28 N 1.32275 * 120.79433 * 359.72021 * 22 21 20 29 29 C 1.31849 * 121.72713 * 0.02562 * 28 22 21 30 30 H 1.09010 * 109.46512 * 54.45385 * 1 2 3 31 31 H 1.08997 * 109.47339 * 174.45129 * 1 2 3 32 32 H 1.08995 * 109.47514 * 294.45813 * 1 2 3 33 33 H 0.97006 * 119.99649 * 355.25723 * 7 6 4 34 34 H 1.09002 * 109.47116 * 95.58848 * 13 12 2 35 35 H 1.09001 * 109.47569 * 215.59351 * 13 12 2 36 36 H 1.09003 * 109.46825 * 335.59342 * 13 12 2 37 37 H 0.96996 * 119.99679 * 4.58576 * 18 16 14 38 38 H 1.07993 * 120.79170 * 0.02562 * 20 19 18 39 39 H 1.08000 * 120.41010 * 180.25967 * 21 20 19 40 40 H 1.08006 * 126.58579 * 359.95465 * 24 23 22 41 41 H 1.08003 * 125.89277 * 180.14845 * 25 24 23 42 42 H 1.07994 * 125.72037 * 179.97438 * 27 26 25 43 43 H 1.08000 * 119.63786 * 180.02562 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.5809 -1.6358 -1.1334 6 6 1.7917 -0.1793 -2.4797 7 7 2.1301 -0.8534 -3.5571 8 14 0.9924 1.5012 -2.6420 9 1 -0.4829 1.3435 -2.7045 10 1 1.3517 2.3358 -1.4675 11 1 1.4728 2.1600 -3.8832 12 7 2.0183 -0.6905 1.1962 13 6 1.6643 -2.0930 1.4283 14 6 2.7931 -0.0354 2.0835 15 8 3.0041 1.1516 1.9445 16 6 3.3919 -0.7702 3.2374 17 8 3.2683 -1.9750 3.3198 18 7 4.0697 -0.0958 4.1873 19 6 4.7116 -0.7924 5.2158 20 6 4.1482 -1.9553 5.7399 21 6 4.8211 -2.6139 6.7529 22 6 6.0221 -2.0927 7.2193 23 7 6.7073 -2.7490 8.2475 24 6 7.8483 -2.3158 8.8732 25 6 8.1628 -3.2438 9.7966 26 7 7.2484 -4.2234 9.7348 27 6 6.3715 -3.9391 8.8112 28 7 6.5253 -0.9840 6.7024 29 6 5.9149 -0.3319 5.7325 30 1 -0.3633 0.5975 -0.8363 31 1 -0.3634 -1.0228 -0.0994 32 1 -0.3634 0.4255 0.9354 33 1 2.6105 -1.6920 -3.4736 34 1 2.4642 -2.7354 1.0597 35 1 1.5264 -2.2611 2.4964 36 1 0.7391 -2.3262 0.9013 37 1 4.1122 0.8727 4.1574 38 1 3.2111 -2.3350 5.3607 39 1 4.4160 -3.5197 7.1793 40 1 8.3895 -1.4043 8.6664 41 1 9.0080 -3.2079 10.4680 42 1 5.5216 -4.5478 8.5400 43 1 6.3564 0.5700 5.3350 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784445580.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:39 Heat of formation + Delta-G solvation = 43.149331 kcal Electronic energy + Delta-G solvation = -28685.678218 eV Core-core repulsion = 24539.785147 eV Total energy + Delta-G solvation = -4145.893071 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.39687 -42.38495 -41.14577 -39.72916 -37.76469 -36.64673 -34.88334 -34.58607 -33.59036 -32.20909 -30.80367 -30.13615 -28.00501 -26.97160 -26.45251 -25.33649 -24.63225 -22.74018 -22.05021 -21.97765 -20.84720 -19.89739 -19.64692 -19.24162 -18.58713 -17.82967 -17.53604 -17.13644 -16.82085 -16.61977 -16.31258 -15.80860 -15.58280 -15.10719 -15.03310 -14.92383 -14.86331 -14.78935 -14.61680 -14.35288 -14.30066 -13.91947 -13.79063 -13.50001 -13.33525 -13.23543 -12.60111 -12.46855 -12.34412 -11.87898 -11.64860 -11.47695 -11.25124 -11.13255 -11.04658 -10.85819 -10.69480 -10.47057 -9.76978 -9.70950 -9.26621 -8.75519 -6.47939 -0.63964 -0.04156 0.25208 1.03158 1.16590 1.41317 1.42102 1.54044 1.68648 1.98681 2.05809 2.38741 2.42607 2.56472 3.02105 3.08427 3.18422 3.45581 3.59569 3.64220 3.78181 3.98237 4.28307 4.38031 4.43711 4.45025 4.49744 4.52397 4.59106 4.66462 4.70090 4.77754 4.82627 4.95376 5.01936 5.08638 5.23305 5.32023 5.44287 5.64112 5.67529 5.78519 5.96496 6.03986 6.28555 6.45450 6.51252 6.57742 6.83969 6.91718 7.31569 8.59588 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.030561 B = 0.002025 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.992877 B =13822.995184 C =14061.212867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.225 3.775 3 H 0.050 0.950 4 C -0.601 4.601 5 H 0.028 0.972 6 C -0.016 4.016 7 N -0.936 5.936 8 Si 1.083 2.917 9 H -0.251 1.251 10 H -0.257 1.257 11 H -0.291 1.291 12 N -0.559 5.559 13 C 0.092 3.908 14 C 0.492 3.508 15 O -0.554 6.554 16 C 0.522 3.478 17 O -0.503 6.503 18 N -0.627 5.627 19 C 0.080 3.920 20 C -0.054 4.054 21 C -0.148 4.148 22 C 0.313 3.687 23 N -0.414 5.414 24 C -0.038 4.038 25 C -0.041 4.041 26 N -0.513 5.513 27 C 0.194 3.806 28 N -0.493 5.493 29 C 0.123 3.877 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.253 0.747 34 H 0.041 0.959 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.436 0.564 38 H 0.163 0.837 39 H 0.178 0.822 40 H 0.191 0.809 41 H 0.194 0.806 42 H 0.244 0.756 43 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.500 -0.423 24.838 25.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.123 3.877 3 H 0.068 0.932 4 C -0.640 4.640 5 H 0.047 0.953 6 C -0.215 4.215 7 N -0.572 5.572 8 Si 0.905 3.095 9 H -0.176 1.176 10 H -0.182 1.182 11 H -0.218 1.218 12 N -0.289 5.289 13 C -0.050 4.050 14 C 0.274 3.726 15 O -0.434 6.434 16 C 0.304 3.696 17 O -0.378 6.378 18 N -0.275 5.275 19 C -0.017 4.017 20 C -0.082 4.082 21 C -0.170 4.170 22 C 0.085 3.915 23 N -0.096 5.096 24 C -0.168 4.168 25 C -0.186 4.186 26 N -0.231 5.231 27 C -0.088 4.088 28 N -0.204 5.204 29 C -0.038 4.038 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.119 0.881 36 H 0.092 0.908 37 H 0.276 0.724 38 H 0.180 0.820 39 H 0.195 0.805 40 H 0.208 0.792 41 H 0.211 0.789 42 H 0.260 0.740 43 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 3.682 0.054 24.434 24.710 hybrid contribution 0.397 -0.687 -0.414 0.895 sum 4.079 -0.634 24.020 24.372 Atomic orbital electron populations 1.22282 0.95624 1.02248 1.00981 1.19388 0.92735 0.94009 0.81578 0.93220 1.22365 1.39401 1.09550 0.92655 0.95327 1.27068 0.96563 1.06307 0.91547 1.70945 1.38559 1.16359 1.31318 0.83546 0.77496 0.71837 0.76616 1.17564 1.18192 1.21826 1.47982 1.46171 1.13738 1.21057 1.21985 1.00667 0.79454 1.02943 1.20095 0.81008 0.87132 0.84376 1.90711 1.61227 1.15443 1.76050 1.20089 0.79412 0.87234 0.82837 1.90719 1.56629 1.14097 1.76325 1.42894 1.49782 1.12115 1.22712 1.18907 0.94545 0.96486 0.91775 1.21778 1.00481 0.93364 0.92564 1.21742 0.93677 1.03148 0.98407 1.18416 0.91055 0.91569 0.90448 1.43225 1.21392 1.18335 1.26624 1.23201 0.91098 1.03796 0.98662 1.22793 1.01638 0.91913 1.02208 1.70348 1.05420 1.28062 1.19229 1.26035 1.02472 0.86417 0.93845 1.66984 1.34143 1.07500 1.11775 1.22779 0.89091 1.00132 0.91819 0.92549 0.91993 0.91927 0.93737 0.94023 0.88094 0.90779 0.72359 0.81970 0.80474 0.79168 0.78909 0.74019 0.78713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.75 8.66 71.98 0.62 -5.13 16 2 C 0.23 10.03 2.20 44.25 0.10 10.13 16 3 H 0.05 2.39 5.40 -2.39 -0.01 2.38 16 4 C -0.60 -32.27 8.76 25.60 0.22 -32.04 16 5 H 0.03 1.69 7.79 -2.91 -0.02 1.67 16 6 C -0.02 -0.89 5.43 84.66 0.46 -0.43 16 7 N -0.94 -56.64 13.70 21.45 0.29 -56.34 16 8 Si 1.08 48.03 25.32 68.60 1.74 49.77 16 9 H -0.25 -9.89 6.81 99.48 0.68 -9.21 16 10 H -0.26 -10.63 6.35 99.48 0.63 -10.00 16 11 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 12 N -0.56 -21.52 2.75 -828.50 -2.28 -23.80 16 13 C 0.09 3.01 8.37 127.77 1.07 4.08 16 14 C 0.49 17.27 7.72 87.23 0.67 17.94 16 15 O -0.55 -21.52 15.84 -3.28 -0.05 -21.57 16 16 C 0.52 14.10 7.55 87.23 0.66 14.76 16 17 O -0.50 -14.11 10.88 -3.36 -0.04 -14.14 16 18 N -0.63 -12.35 5.33 -304.47 -1.62 -13.97 16 19 C 0.08 1.41 6.31 38.29 0.24 1.65 16 20 C -0.05 -0.90 8.80 22.57 0.20 -0.70 16 21 C -0.15 -2.06 9.50 22.46 0.21 -1.85 16 22 C 0.31 5.51 7.50 132.75 1.00 6.51 16 23 N -0.41 -7.33 2.98 -355.76 -1.06 -8.40 16 24 C -0.04 -0.66 11.17 83.04 0.93 0.26 16 25 C -0.04 -0.74 11.85 83.51 0.99 0.25 16 26 N -0.51 -10.58 11.24 -199.68 -2.25 -12.82 16 27 C 0.19 3.12 11.89 179.99 2.14 5.26 16 28 N -0.49 -9.15 9.88 -192.20 -1.90 -11.05 16 29 C 0.12 1.94 11.12 84.83 0.94 2.88 16 30 H 0.06 2.12 4.46 -2.38 -0.01 2.11 16 31 H 0.06 2.24 6.89 -2.39 -0.02 2.22 16 32 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.25 15.59 8.72 -92.70 -0.81 14.79 16 34 H 0.04 1.48 8.09 -2.39 -0.02 1.46 16 35 H 0.10 2.75 5.98 -2.39 -0.01 2.73 16 36 H 0.07 2.38 6.55 -2.39 -0.02 2.36 16 37 H 0.44 7.13 8.32 -92.71 -0.77 6.36 16 38 H 0.16 2.75 6.35 -2.91 -0.02 2.73 16 39 H 0.18 1.29 6.77 -2.91 -0.02 1.27 16 40 H 0.19 2.76 8.06 -2.91 -0.02 2.73 16 41 H 0.19 2.40 8.06 -2.91 -0.02 2.38 16 42 H 0.24 1.82 7.06 -2.91 -0.02 1.80 16 43 H 0.20 2.02 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -72.92 359.73 3.47 -69.45 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.18 Total: 19.31 kcal Atomic # 6 Polarization: 13.11 SS G_CDS: 10.46 Total: 23.56 kcal Atomic # 7 Polarization: -117.57 SS G_CDS: -8.81 Total: -126.38 kcal Atomic # 8 Polarization: -35.63 SS G_CDS: -0.09 Total: -35.71 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 1.74 Total: 49.77 kcal Total: -72.92 3.47 -69.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784445580.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.604 kcal (2) G-P(sol) polarization free energy of solvation -72.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds