Wall clock time and date at job start Wed Apr 1 2020 02:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.46705 * 2 1 4 4 C 1.35903 * 116.99534 * 179.97438 * 3 2 1 5 5 C 1.38752 * 120.05880 * 0.02562 * 4 3 2 6 6 C 1.38119 * 119.94743 * 179.97438 * 5 4 3 7 7 C 1.38292 * 120.05381 * 359.97438 * 6 5 4 8 8 C 1.38248 * 120.10997 * 359.97438 * 7 6 5 9 9 C 1.38160 * 120.05884 * 0.02562 * 8 7 6 10 10 C 1.50700 * 120.02934 * 179.97438 * 9 8 7 11 11 F 1.39901 * 109.46757 * 144.03061 * 10 9 8 12 12 F 1.39902 * 109.46893 * 264.02788 * 10 9 8 13 13 C 1.50691 * 109.47019 * 24.02983 * 10 9 8 14 14 O 1.21295 * 120.00000 * 245.43536 * 13 10 9 15 15 N 1.34774 * 120.00224 * 65.44266 * 13 10 9 16 16 C 1.37096 * 120.00292 * 4.29274 * 15 13 10 17 17 H 1.08007 * 119.99462 * 326.17763 * 16 15 13 18 18 C 1.38943 * 120.00310 * 146.17379 * 16 15 13 19 19 N 1.31412 * 119.99974 * 335.54566 * 18 16 15 20 20 Si 1.86800 * 120.00070 * 155.54660 * 18 16 15 21 21 H 1.48495 * 109.47203 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47355 * 120.00044 * 20 18 16 23 23 H 1.48499 * 109.47141 * 239.99989 * 20 18 16 24 24 C 1.46506 * 120.00236 * 184.29869 * 15 13 10 25 25 C 1.53004 * 109.47096 * 89.99348 * 24 15 13 26 26 O 1.42902 * 109.46899 * 65.00227 * 25 24 15 27 27 C 1.42901 * 113.99572 * 179.97438 * 26 25 24 28 28 H 1.09000 * 109.47464 * 60.00416 * 1 2 3 29 29 H 1.09007 * 109.46843 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47392 * 299.99552 * 1 2 3 31 31 H 1.09001 * 109.46655 * 240.00508 * 2 1 3 32 32 H 1.08996 * 109.46963 * 120.00357 * 2 1 3 33 33 H 1.07996 * 120.02692 * 359.95329 * 5 4 3 34 34 H 1.08000 * 119.97768 * 179.72368 * 6 5 4 35 35 H 1.08000 * 119.94275 * 179.97438 * 7 6 5 36 36 H 1.07998 * 119.96845 * 180.02562 * 8 7 6 37 37 H 0.97004 * 120.00087 * 185.03662 * 19 18 16 38 38 H 1.08997 * 109.47354 * 209.99723 * 24 15 13 39 39 H 1.08999 * 109.46695 * 329.99681 * 24 15 13 40 40 H 1.08995 * 109.46960 * 185.00281 * 25 24 15 41 41 H 1.09000 * 109.47013 * 305.00122 * 25 24 15 42 42 H 1.08997 * 109.47256 * 300.00116 * 27 26 25 43 43 H 1.09005 * 109.46854 * 60.00623 * 27 26 25 44 44 H 1.08998 * 109.46962 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3535 1.5254 0.0005 5 6 4.1999 0.4259 0.0005 6 6 5.5688 0.6095 0.0005 7 6 6.0961 1.8879 0.0000 8 6 5.2550 2.9851 -0.0010 9 6 3.8849 2.8067 -0.0010 10 6 2.9687 4.0032 -0.0016 11 9 1.8377 3.7239 -0.7763 12 9 2.5761 4.2905 1.3101 13 6 3.6935 5.1907 -0.5806 14 8 3.9381 6.1516 0.1180 15 7 4.0698 5.1851 -1.8747 16 6 3.7167 4.1386 -2.6869 17 1 3.6508 3.1394 -2.2821 18 6 3.4437 4.3634 -4.0306 19 7 3.0514 5.5517 -4.4315 20 14 3.6342 2.9762 -5.2671 21 1 4.0855 1.7471 -4.5666 22 1 2.3293 2.7193 -5.9278 23 1 4.6400 3.3598 -6.2901 24 6 4.8564 6.2975 -2.4136 25 6 6.3471 5.9971 -2.2443 26 8 6.6983 4.8645 -3.0417 27 6 8.0769 4.4982 -2.9557 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.7886 -0.5727 0.0008 34 1 6.2280 -0.2460 0.0050 35 1 7.1668 2.0294 0.0005 36 1 5.6692 3.9824 -0.0018 37 1 2.7907 5.6903 -5.3555 38 1 4.6292 6.4239 -3.4721 39 1 4.6069 7.2126 -1.8766 40 1 6.9303 6.8609 -2.5632 41 1 6.5579 5.7833 -1.1965 42 1 8.6957 5.3310 -3.2896 43 1 8.3240 4.2533 -1.9226 44 1 8.2625 3.6305 -3.5887 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837236665.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:00 Heat of formation + Delta-G solvation = -166.829290 kcal Electronic energy + Delta-G solvation = -33184.137227 eV Core-core repulsion = 28546.156863 eV Total energy + Delta-G solvation = -4637.980365 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.06511 -46.04312 -39.97369 -38.71254 -37.27046 -36.93438 -34.79852 -32.23845 -31.68741 -31.39386 -29.55632 -29.20805 -26.33059 -25.76051 -24.61980 -24.02426 -22.37155 -21.57887 -21.18688 -19.27986 -18.23974 -17.84274 -16.94925 -16.60536 -15.99136 -15.86496 -15.57145 -15.41226 -15.26395 -14.82177 -14.55441 -14.38246 -14.24317 -14.01424 -13.56233 -13.36757 -13.25681 -12.94381 -12.74603 -12.52780 -12.36856 -12.18772 -12.05218 -11.95291 -11.83590 -11.60932 -11.49240 -11.21739 -11.18831 -11.10496 -11.02954 -10.66618 -10.61527 -10.52341 -10.29506 -10.12525 -9.21804 -9.03465 -8.78096 -8.49248 -7.96524 -7.60878 -6.38186 -3.96826 1.45383 1.68237 3.11257 3.27182 3.32515 3.35089 3.48364 3.90588 3.94398 4.26075 4.45990 4.53707 4.93612 4.95818 4.98069 5.01529 5.16776 5.26633 5.37446 5.49005 5.52130 5.59367 5.62108 5.67228 5.69611 5.85522 5.87272 5.90413 5.94117 5.99918 6.06775 6.11002 6.13553 6.23458 6.45285 6.55561 6.59742 6.72713 6.98009 7.19302 7.51525 7.59560 7.67743 7.88445 8.31766 9.01262 9.28560 9.70090 10.65128 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010105 B = 0.005941 C = 0.005615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.298852 B = 4711.801580 C = 4985.742790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.298 6.298 4 C 0.166 3.834 5 C -0.219 4.219 6 C -0.067 4.067 7 C -0.159 4.159 8 C -0.026 4.026 9 C -0.162 4.162 10 C 0.354 3.646 11 F -0.165 7.165 12 F -0.188 7.188 13 C 0.420 3.580 14 O -0.585 6.585 15 N -0.394 5.394 16 C -0.326 4.326 17 H 0.098 0.902 18 C 0.060 3.940 19 N -0.856 5.856 20 Si 0.915 3.085 21 H -0.267 1.267 22 H -0.284 1.284 23 H -0.278 1.278 24 C 0.105 3.895 25 C 0.054 3.946 26 O -0.359 6.359 27 C 0.030 3.970 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.129 0.871 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.130 0.870 37 H 0.271 0.729 38 H 0.124 0.876 39 H 0.077 0.923 40 H 0.044 0.956 41 H 0.038 0.962 42 H 0.030 0.970 43 H 0.032 0.968 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.615 -10.377 4.355 12.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.211 6.211 4 C 0.120 3.880 5 C -0.238 4.238 6 C -0.085 4.085 7 C -0.178 4.178 8 C -0.044 4.044 9 C -0.164 4.164 10 C 0.314 3.686 11 F -0.145 7.145 12 F -0.169 7.169 13 C 0.205 3.795 14 O -0.471 6.471 15 N -0.109 5.109 16 C -0.453 4.453 17 H 0.115 0.885 18 C -0.147 4.147 19 N -0.492 5.492 20 Si 0.742 3.258 21 H -0.191 1.191 22 H -0.210 1.210 23 H -0.204 1.204 24 C -0.018 4.018 25 C -0.023 4.023 26 O -0.277 6.277 27 C -0.067 4.067 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.146 0.854 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.148 0.852 37 H 0.081 0.919 38 H 0.141 0.859 39 H 0.095 0.905 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.048 0.952 43 H 0.050 0.950 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.395 -9.734 4.356 11.534 hybrid contribution 0.283 -0.839 -0.584 1.061 sum 4.678 -10.573 3.771 12.161 Atomic orbital electron populations 1.21756 0.92766 1.02356 1.03982 1.22778 0.96077 0.82264 1.01020 1.86255 1.18312 1.28764 1.87746 1.18646 0.82792 0.92941 0.93660 1.21093 0.94338 0.97493 1.10830 1.20922 0.94194 0.97165 0.96221 1.20889 0.99625 0.92051 1.05191 1.20778 0.90986 0.99796 0.92871 1.19484 0.94684 0.91247 1.11020 1.18889 0.82519 0.92384 0.74793 1.93085 1.52705 1.94370 1.74371 1.92983 1.91856 1.94583 1.37454 1.20287 0.85261 0.88141 0.85772 1.90597 1.60956 1.34644 1.60930 1.43360 1.41756 1.19462 1.06311 1.19523 1.47370 0.87967 0.90482 0.88486 1.25163 0.94257 0.96979 0.98313 1.69847 1.38323 1.22887 1.18151 0.86056 0.77778 0.81552 0.80399 1.19136 1.21038 1.20365 1.21687 0.86300 0.89393 1.04422 1.22978 0.97679 0.87927 0.93750 1.88182 1.23546 1.48384 1.67621 1.22651 0.84448 0.99479 1.00112 0.91109 0.90716 0.91515 0.92028 0.92333 0.85361 0.85811 0.85775 0.85237 0.91890 0.85886 0.90499 0.93827 0.94364 0.95167 0.94962 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 10.28 37.16 0.38 -1.30 16 2 C 0.05 0.69 5.46 37.16 0.20 0.90 16 3 O -0.30 -5.43 8.30 -19.43 -0.16 -5.59 16 4 C 0.17 3.10 6.56 -39.21 -0.26 2.84 16 5 C -0.22 -3.29 9.04 -39.43 -0.36 -3.65 16 6 C -0.07 -0.93 10.04 -39.60 -0.40 -1.33 16 7 C -0.16 -2.46 10.04 -39.56 -0.40 -2.86 16 8 C -0.03 -0.50 8.82 -39.61 -0.35 -0.85 16 9 C -0.16 -3.41 3.29 -104.47 -0.34 -3.75 16 10 C 0.35 8.52 1.74 -29.04 -0.05 8.47 16 11 F -0.16 -4.16 13.82 2.25 0.03 -4.13 16 12 F -0.19 -4.55 16.66 2.25 0.04 -4.51 16 13 C 0.42 10.79 5.09 -10.99 -0.06 10.74 16 14 O -0.58 -15.98 16.18 5.54 0.09 -15.89 16 15 N -0.39 -9.91 2.42 -114.81 -0.28 -10.19 16 16 C -0.33 -8.39 6.97 -14.94 -0.10 -8.50 16 17 H 0.10 2.54 5.49 -52.48 -0.29 2.25 16 18 C 0.06 1.53 4.91 -17.47 -0.09 1.44 16 19 N -0.86 -22.62 11.39 55.50 0.63 -21.99 16 20 Si 0.92 20.49 29.62 -169.99 -5.04 15.46 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 C 0.11 2.45 5.47 -4.04 -0.02 2.43 16 25 C 0.05 1.07 6.28 37.16 0.23 1.30 16 26 O -0.36 -7.21 10.18 -35.23 -0.36 -7.57 16 27 C 0.03 0.45 11.01 101.05 1.11 1.56 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.73 7.66 -51.93 -0.40 0.33 16 32 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 33 H 0.13 1.53 6.30 -52.49 -0.33 1.20 16 34 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 36 H 0.13 2.61 6.59 -52.49 -0.35 2.27 16 37 H 0.27 6.75 8.32 -40.82 -0.34 6.41 16 38 H 0.12 3.07 5.37 -51.93 -0.28 2.79 16 39 H 0.08 1.80 7.37 -51.93 -0.38 1.41 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.04 0.74 7.90 -51.93 -0.41 0.33 16 42 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 370.67 15.07 5.59 5.59 Total: -1.00 -31.76 370.67 -5.72 -37.48 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -5.77 Total: 3.89 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: -0.49 Total: 7.45 kcal Atomic # 7 Polarization: -32.53 SS G_CDS: 0.35 Total: -32.17 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -0.43 Total: -29.04 kcal Atomic # 9 Polarization: -8.72 SS G_CDS: 0.07 Total: -8.65 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.04 Total: 15.46 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.76 -5.72 -37.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837236665.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.354 kcal (2) G-P(sol) polarization free energy of solvation -31.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds