Wall clock time and date at job start Wed Apr 1 2020 02:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.46705 * 2 1 4 4 C 1.35903 * 116.99534 * 179.97438 * 3 2 1 5 5 C 1.38752 * 120.05880 * 0.02562 * 4 3 2 6 6 C 1.38119 * 119.94743 * 179.97438 * 5 4 3 7 7 C 1.38292 * 120.05381 * 359.97438 * 6 5 4 8 8 C 1.38248 * 120.10997 * 359.97438 * 7 6 5 9 9 C 1.38160 * 120.05884 * 0.02562 * 8 7 6 10 10 C 1.50700 * 120.02934 * 179.97438 * 9 8 7 11 11 F 1.39901 * 109.46757 * 144.03061 * 10 9 8 12 12 F 1.39902 * 109.46893 * 264.02788 * 10 9 8 13 13 C 1.50691 * 109.47019 * 24.02983 * 10 9 8 14 14 O 1.21295 * 120.00000 * 245.43536 * 13 10 9 15 15 N 1.34774 * 120.00224 * 65.44266 * 13 10 9 16 16 C 1.37096 * 120.00292 * 4.29274 * 15 13 10 17 17 H 1.08007 * 119.99462 * 326.17763 * 16 15 13 18 18 C 1.38943 * 120.00310 * 146.17379 * 16 15 13 19 19 N 1.31412 * 119.99974 * 335.54566 * 18 16 15 20 20 Si 1.86800 * 120.00070 * 155.54660 * 18 16 15 21 21 H 1.48495 * 109.47203 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47355 * 120.00044 * 20 18 16 23 23 H 1.48499 * 109.47141 * 239.99989 * 20 18 16 24 24 C 1.46506 * 120.00236 * 184.29869 * 15 13 10 25 25 C 1.53004 * 109.47096 * 89.99348 * 24 15 13 26 26 O 1.42902 * 109.46899 * 65.00227 * 25 24 15 27 27 C 1.42901 * 113.99572 * 179.97438 * 26 25 24 28 28 H 1.09000 * 109.47464 * 60.00416 * 1 2 3 29 29 H 1.09007 * 109.46843 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47392 * 299.99552 * 1 2 3 31 31 H 1.09001 * 109.46655 * 240.00508 * 2 1 3 32 32 H 1.08996 * 109.46963 * 120.00357 * 2 1 3 33 33 H 1.07996 * 120.02692 * 359.95329 * 5 4 3 34 34 H 1.08000 * 119.97768 * 179.72368 * 6 5 4 35 35 H 1.08000 * 119.94275 * 179.97438 * 7 6 5 36 36 H 1.07998 * 119.96845 * 180.02562 * 8 7 6 37 37 H 0.97004 * 120.00087 * 185.03662 * 19 18 16 38 38 H 1.08997 * 109.47354 * 209.99723 * 24 15 13 39 39 H 1.08999 * 109.46695 * 329.99681 * 24 15 13 40 40 H 1.08995 * 109.46960 * 185.00281 * 25 24 15 41 41 H 1.09000 * 109.47013 * 305.00122 * 25 24 15 42 42 H 1.08997 * 109.47256 * 300.00116 * 27 26 25 43 43 H 1.09005 * 109.46854 * 60.00623 * 27 26 25 44 44 H 1.08998 * 109.46962 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3535 1.5254 0.0005 5 6 4.1999 0.4259 0.0005 6 6 5.5688 0.6095 0.0005 7 6 6.0961 1.8879 0.0000 8 6 5.2550 2.9851 -0.0010 9 6 3.8849 2.8067 -0.0010 10 6 2.9687 4.0032 -0.0016 11 9 1.8377 3.7239 -0.7763 12 9 2.5761 4.2905 1.3101 13 6 3.6935 5.1907 -0.5806 14 8 3.9381 6.1516 0.1180 15 7 4.0698 5.1851 -1.8747 16 6 3.7167 4.1386 -2.6869 17 1 3.6508 3.1394 -2.2821 18 6 3.4437 4.3634 -4.0306 19 7 3.0514 5.5517 -4.4315 20 14 3.6342 2.9762 -5.2671 21 1 4.0855 1.7471 -4.5666 22 1 2.3293 2.7193 -5.9278 23 1 4.6400 3.3598 -6.2901 24 6 4.8564 6.2975 -2.4136 25 6 6.3471 5.9971 -2.2443 26 8 6.6983 4.8645 -3.0417 27 6 8.0769 4.4982 -2.9557 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.7886 -0.5727 0.0008 34 1 6.2280 -0.2460 0.0050 35 1 7.1668 2.0294 0.0005 36 1 5.6692 3.9824 -0.0018 37 1 2.7907 5.6903 -5.3555 38 1 4.6292 6.4239 -3.4721 39 1 4.6069 7.2126 -1.8766 40 1 6.9303 6.8609 -2.5632 41 1 6.5579 5.7833 -1.1965 42 1 8.6957 5.3310 -3.2896 43 1 8.3240 4.2533 -1.9226 44 1 8.2625 3.6305 -3.5887 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837236665.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:59 Heat of formation + Delta-G solvation = -186.300713 kcal Electronic energy + Delta-G solvation = -33184.981572 eV Core-core repulsion = 28546.156863 eV Total energy + Delta-G solvation = -4638.824709 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.96077 -47.96209 -41.28543 -40.52783 -38.58559 -38.41570 -36.74160 -33.73631 -33.40548 -32.56809 -31.06713 -30.55776 -27.92276 -27.28712 -26.38408 -25.15377 -23.91829 -22.89533 -22.56415 -21.16891 -19.79014 -19.49517 -18.77269 -18.11066 -17.65076 -17.16776 -17.09515 -16.96075 -16.78391 -16.43492 -16.05722 -15.94110 -15.86955 -15.34391 -15.30433 -14.97104 -14.74679 -14.36283 -14.29172 -14.25240 -13.98706 -13.67041 -13.54315 -13.37422 -13.26436 -13.04260 -12.97581 -12.90681 -12.66049 -12.53118 -12.43835 -12.41145 -12.07626 -11.84268 -11.78574 -11.62700 -11.12771 -10.58268 -10.43035 -9.99475 -9.60364 -9.20718 -8.34638 -5.98332 0.17000 0.43336 1.25916 1.44763 1.57050 1.60122 2.08001 2.22928 2.41482 2.68038 2.88075 2.98347 3.09791 3.55023 3.68482 3.85533 3.99098 4.08463 4.13290 4.20232 4.22594 4.25893 4.36179 4.38963 4.47657 4.52380 4.56876 4.61363 4.64772 4.73150 4.82290 4.88596 4.89913 4.95295 5.18355 5.28976 5.29390 5.35733 5.48211 5.51767 5.78339 5.80873 6.33305 6.43583 6.44303 7.01443 7.30611 7.72790 8.69494 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010105 B = 0.005941 C = 0.005615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.298852 B = 4711.801580 C = 4985.742790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.042 3.958 3 O -0.331 6.331 4 C 0.150 3.850 5 C -0.211 4.211 6 C -0.051 4.051 7 C -0.156 4.156 8 C -0.046 4.046 9 C -0.196 4.196 10 C 0.349 3.651 11 F -0.179 7.179 12 F -0.198 7.198 13 C 0.406 3.594 14 O -0.617 6.617 15 N -0.391 5.391 16 C -0.329 4.329 17 H 0.094 0.906 18 C 0.021 3.979 19 N -0.884 5.884 20 Si 0.974 3.026 21 H -0.260 1.260 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.100 3.900 25 C 0.068 3.932 26 O -0.390 6.390 27 C 0.024 3.976 28 H 0.051 0.949 29 H 0.110 0.890 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.166 0.834 34 H 0.174 0.826 35 H 0.155 0.845 36 H 0.105 0.895 37 H 0.275 0.725 38 H 0.108 0.892 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.035 0.965 42 H 0.049 0.951 43 H 0.045 0.955 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.634 -14.065 3.720 15.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.032 4.032 3 O -0.245 6.245 4 C 0.103 3.897 5 C -0.230 4.230 6 C -0.068 4.068 7 C -0.174 4.174 8 C -0.065 4.065 9 C -0.198 4.198 10 C 0.309 3.691 11 F -0.160 7.160 12 F -0.179 7.179 13 C 0.193 3.807 14 O -0.506 6.506 15 N -0.105 5.105 16 C -0.457 4.457 17 H 0.111 0.889 18 C -0.183 4.183 19 N -0.521 5.521 20 Si 0.798 3.202 21 H -0.184 1.184 22 H -0.208 1.208 23 H -0.197 1.197 24 C -0.023 4.023 25 C -0.009 4.009 26 O -0.309 6.309 27 C -0.072 4.072 28 H 0.070 0.930 29 H 0.128 0.872 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.183 0.817 34 H 0.191 0.809 35 H 0.172 0.828 36 H 0.124 0.876 37 H 0.085 0.915 38 H 0.126 0.874 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.053 0.947 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.423 -13.431 3.713 15.344 hybrid contribution -0.352 0.285 -0.380 0.591 sum 6.072 -13.146 3.332 14.859 Atomic orbital electron populations 1.21810 0.91988 1.04231 1.02647 1.23174 0.96818 0.80409 1.02791 1.86225 1.18462 1.32009 1.87824 1.18859 0.83611 0.93021 0.94186 1.21552 0.94567 0.97903 1.08928 1.21499 0.94358 0.97906 0.93049 1.21257 1.00687 0.91644 1.03795 1.20737 0.90851 1.00125 0.94748 1.19354 0.94744 0.90819 1.14890 1.19029 0.82461 0.93608 0.73974 1.93033 1.53650 1.94502 1.74781 1.92942 1.92043 1.94841 1.38085 1.20649 0.85534 0.88508 0.86051 1.90543 1.62551 1.35899 1.61633 1.43514 1.41306 1.19548 1.06093 1.19607 1.47509 0.87878 0.90685 0.88883 1.25931 0.93706 0.99142 0.99536 1.69934 1.38974 1.24526 1.18680 0.85179 0.77770 0.79098 0.78196 1.18416 1.20779 1.19721 1.21729 0.88962 0.88697 1.02914 1.22716 0.95152 0.89285 0.93784 1.88108 1.26781 1.48363 1.67637 1.22896 0.82040 1.00776 1.01484 0.92969 0.87150 0.92341 0.90677 0.89827 0.81697 0.80876 0.82768 0.87648 0.91549 0.87448 0.91798 0.90970 0.94678 0.93263 0.93658 0.88950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 10.28 71.98 0.74 -2.38 16 2 C 0.04 0.99 5.46 71.98 0.39 1.39 16 3 O -0.33 -12.00 8.30 -92.46 -0.77 -12.77 16 4 C 0.15 5.44 6.56 22.51 0.15 5.59 16 5 C -0.21 -5.56 9.04 22.36 0.20 -5.36 16 6 C -0.05 -1.16 10.04 22.25 0.22 -0.94 16 7 C -0.16 -4.36 10.04 22.29 0.22 -4.14 16 8 C -0.05 -1.77 8.82 22.25 0.20 -1.57 16 9 C -0.20 -8.38 3.29 -19.77 -0.06 -8.44 16 10 C 0.35 17.66 1.74 29.10 0.05 17.71 16 11 F -0.18 -9.53 13.82 44.97 0.62 -8.91 16 12 F -0.20 -10.20 16.66 44.97 0.75 -9.45 16 13 C 0.41 22.03 5.09 87.65 0.45 22.48 16 14 O -0.62 -35.80 16.18 -3.08 -0.05 -35.85 16 15 N -0.39 -20.45 2.42 -635.54 -1.54 -21.99 16 16 C -0.33 -17.31 6.97 84.04 0.59 -16.72 16 17 H 0.09 4.96 5.49 -2.91 -0.02 4.95 16 18 C 0.02 1.08 4.91 84.92 0.42 1.50 16 19 N -0.88 -47.68 11.39 21.66 0.25 -47.43 16 20 Si 0.97 41.51 29.62 68.60 2.03 43.55 16 21 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 22 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 24 C 0.10 4.83 5.47 86.38 0.47 5.30 16 25 C 0.07 2.68 6.28 71.98 0.45 3.13 16 26 O -0.39 -15.27 10.18 -148.98 -1.52 -16.79 16 27 C 0.02 0.66 11.01 113.37 1.25 1.91 16 28 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 1.54 7.66 -2.39 -0.02 1.52 16 32 H 0.08 1.52 7.66 -2.39 -0.02 1.51 16 33 H 0.17 3.04 6.30 -2.91 -0.02 3.02 16 34 H 0.17 2.33 8.06 -2.91 -0.02 2.30 16 35 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 36 H 0.11 4.44 6.59 -2.91 -0.02 4.42 16 37 H 0.27 13.87 8.32 -92.71 -0.77 13.10 16 38 H 0.11 5.56 5.37 -2.39 -0.01 5.54 16 39 H 0.06 3.17 7.37 -2.39 -0.02 3.15 16 40 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 41 H 0.03 1.39 7.90 -2.39 -0.02 1.37 16 42 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 44 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -73.50 370.67 6.54 -66.96 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 1.03 Total: 23.21 kcal Atomic # 6 Polarization: 13.73 SS G_CDS: 5.73 Total: 19.46 kcal Atomic # 7 Polarization: -68.12 SS G_CDS: -1.29 Total: -69.42 kcal Atomic # 8 Polarization: -63.07 SS G_CDS: -2.33 Total: -65.40 kcal Atomic # 9 Polarization: -19.73 SS G_CDS: 1.37 Total: -18.36 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.55 kcal Total: -73.50 6.54 -66.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837236665.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.337 kcal (2) G-P(sol) polarization free energy of solvation -73.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds