Wall clock time and date at job start Wed Apr 1 2020 02:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81402 * 109.47056 * 2 1 4 4 C 1.81396 * 103.00149 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47242 * 54.99652 * 4 3 2 6 6 C 1.53011 * 109.47039 * 295.00019 * 4 3 2 7 7 C 1.50705 * 109.47382 * 175.00168 * 4 3 2 8 8 N 1.29939 * 126.28632 * 45.02161 * 7 4 3 9 9 O 1.21305 * 110.25021 * 180.02562 * 8 7 4 10 10 C 1.33645 * 109.80905 * 359.97438 * 9 8 7 11 11 C 1.50697 * 126.54780 * 179.97438 * 10 9 8 12 12 N 1.46496 * 109.47161 * 275.74868 * 11 10 9 13 13 C 1.36938 * 119.99834 * 84.73338 * 12 11 10 14 14 H 1.08003 * 120.00125 * 322.21405 * 13 12 11 15 15 C 1.38817 * 119.99770 * 142.22161 * 13 12 11 16 16 N 1.31620 * 119.99688 * 158.26680 * 15 13 12 17 17 Si 1.86789 * 120.00151 * 338.25920 * 15 13 12 18 18 H 1.48507 * 109.46813 * 95.31518 * 17 15 13 19 19 H 1.48500 * 109.47638 * 215.31274 * 17 15 13 20 20 H 1.48501 * 109.47490 * 335.31917 * 17 15 13 21 21 C 1.46497 * 120.00099 * 264.72944 * 12 11 10 22 22 C 1.53009 * 109.46729 * 90.00137 * 21 12 11 23 23 C 1.50703 * 109.46609 * 180.02562 * 22 21 12 24 24 O 1.20821 * 120.00400 * 359.97438 * 23 22 21 25 25 O 1.34228 * 119.99534 * 180.02562 * 23 22 21 26 26 C 1.45208 * 116.99907 * 179.97438 * 25 23 22 27 27 N 1.31129 * 106.89838 * 0.22738 * 10 9 8 28 28 H 1.08999 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47062 * 299.99919 * 1 2 3 30 30 H 1.09001 * 109.47430 * 59.99639 * 1 2 3 31 31 H 1.09000 * 109.47456 * 240.00299 * 2 1 3 32 32 H 1.08991 * 109.47468 * 119.99583 * 2 1 3 33 33 H 1.08995 * 109.47155 * 180.02562 * 6 4 3 34 34 H 1.08998 * 109.46804 * 299.99901 * 6 4 3 35 35 H 1.08997 * 109.47020 * 59.99622 * 6 4 3 36 36 H 1.09002 * 109.46854 * 155.75069 * 11 10 9 37 37 H 1.09005 * 109.47198 * 35.75218 * 11 10 9 38 38 H 0.96995 * 120.00027 * 179.97438 * 16 15 13 39 39 H 1.09000 * 109.47221 * 209.99885 * 21 12 11 40 40 H 1.08992 * 109.47454 * 330.00607 * 21 12 11 41 41 H 1.08991 * 109.47140 * 299.99703 * 22 21 12 42 42 H 1.08992 * 109.47276 * 60.00194 * 22 21 12 43 43 H 1.09000 * 109.46877 * 299.99348 * 26 25 23 44 44 H 1.08999 * 109.47077 * 59.99713 * 26 25 23 45 45 H 1.09003 * 109.46869 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9370 1.5059 -0.0008 5 1 4.2313 0.8794 -0.8428 6 6 4.3757 0.8425 1.3064 7 6 4.5957 2.8557 -0.1247 8 7 4.2735 3.9315 0.5291 9 8 4.9933 4.8521 0.2035 10 6 5.8700 4.4381 -0.7164 11 6 6.9358 5.2718 -1.3797 12 7 6.3561 5.9909 -2.5167 13 6 5.7210 7.1877 -2.3182 14 1 5.1144 7.3376 -1.4372 15 6 5.8568 8.2084 -3.2492 16 7 4.9567 9.1667 -3.3111 17 14 7.3170 8.2219 -4.4139 18 1 6.9298 7.5892 -5.7005 19 1 7.7414 9.6236 -4.6597 20 1 8.4408 7.4635 -3.8079 21 6 6.4559 5.4297 -3.8663 22 6 5.2420 4.5391 -4.1392 23 6 5.3450 3.9612 -5.5272 24 8 6.2917 4.2341 -6.2265 25 8 4.3844 3.1442 -5.9870 26 6 4.5489 2.6252 -7.3331 27 7 5.6219 3.1692 -0.9355 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8899 33 1 5.4587 0.7201 1.3061 34 1 4.0814 1.4690 2.1483 35 1 3.8993 -0.1338 1.3960 36 1 7.7383 4.6231 -1.7309 37 1 7.3355 5.9884 -0.6621 38 1 5.0517 9.8801 -3.9614 39 1 6.4837 6.2394 -4.5954 40 1 7.3669 4.8368 -3.9468 41 1 5.2142 3.7294 -3.4102 42 1 4.3310 5.1319 -4.0587 43 1 4.5910 3.4543 -8.0395 44 1 5.4738 2.0514 -7.3907 45 1 3.7055 1.9801 -7.5794 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879473705.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:36 Heat of formation + Delta-G solvation = 2.952976 kcal Electronic energy + Delta-G solvation = -28419.288371 eV Core-core repulsion = 24374.803455 eV Total energy + Delta-G solvation = -4044.484916 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.09518 -40.12133 -36.93713 -36.09455 -35.98268 -33.69100 -33.05223 -32.03605 -31.67804 -30.40142 -27.75406 -26.93310 -25.12402 -24.42087 -23.88579 -23.07101 -21.84986 -20.55296 -20.31622 -17.63277 -17.46412 -17.20380 -16.66606 -16.42825 -16.34971 -16.22015 -15.41735 -15.27143 -14.96788 -14.81893 -14.39156 -14.20482 -13.74509 -13.49133 -13.21092 -12.97956 -12.82385 -12.58825 -12.56490 -12.40322 -12.20432 -12.03941 -11.88840 -11.69721 -11.58467 -11.45680 -11.31365 -11.05700 -10.84794 -10.66452 -10.60885 -10.58386 -10.15032 -9.98123 -9.94883 -9.69204 -9.51568 -8.70624 -7.80036 -7.32551 -6.18114 -3.70531 1.22043 1.69409 2.33220 2.56519 2.67358 3.01814 3.29017 3.40006 3.44103 3.44923 3.72811 4.37558 4.39112 4.64361 4.69858 4.71385 4.74156 4.84784 5.09973 5.13005 5.18845 5.24725 5.24800 5.26781 5.40385 5.47451 5.53437 5.55530 5.61061 5.61595 5.74199 5.78860 5.82917 5.87447 6.07497 6.10437 6.18718 6.40152 6.41684 6.56651 6.71982 7.74836 8.07534 8.13725 8.60157 8.69691 9.45339 9.73799 10.94739 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009966 B = 0.003832 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2809.013295 B = 7304.819832 C = 8943.995528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.099 4.099 3 S -0.216 6.216 4 C 0.035 3.965 5 H 0.112 0.888 6 C -0.142 4.142 7 C 0.169 3.831 8 N -0.374 5.374 9 O 0.089 5.911 10 C 0.194 3.806 11 C 0.222 3.778 12 N -0.578 5.578 13 C -0.299 4.299 14 H 0.089 0.911 15 C 0.053 3.947 16 N -0.883 5.883 17 Si 0.874 3.126 18 H -0.278 1.278 19 H -0.297 1.297 20 H -0.263 1.263 21 C 0.146 3.854 22 C -0.135 4.135 23 C 0.466 3.534 24 O -0.514 6.514 25 O -0.363 6.363 26 C 0.034 3.966 27 N -0.494 5.494 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.268 0.732 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.102 0.898 42 H 0.109 0.891 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.180 -18.733 3.551 19.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.247 4.247 3 S 0.010 5.990 4 C -0.095 4.095 5 H 0.130 0.870 6 C -0.202 4.202 7 C -0.104 4.104 8 N -0.081 5.081 9 O 0.029 5.971 10 C -0.030 4.030 11 C 0.091 3.909 12 N -0.298 5.298 13 C -0.426 4.426 14 H 0.106 0.894 15 C -0.151 4.151 16 N -0.521 5.521 17 Si 0.702 3.298 18 H -0.206 1.206 19 H -0.225 1.225 20 H -0.188 1.188 21 C 0.020 3.980 22 C -0.175 4.175 23 C 0.309 3.691 24 O -0.402 6.402 25 O -0.280 6.280 26 C -0.060 4.060 27 N -0.229 5.229 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.118 0.882 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.120 0.880 42 H 0.128 0.872 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.150 -17.878 3.615 18.509 hybrid contribution 1.347 -1.012 -1.134 2.030 sum -1.804 -18.889 2.481 19.137 Atomic orbital electron populations 1.21490 0.92056 1.02451 1.03440 1.23404 1.00402 0.96019 1.04894 1.87505 1.02305 1.11314 1.97906 1.21094 0.93858 0.91509 1.03087 0.86966 1.22080 1.02255 1.00537 0.95295 1.24559 0.95159 0.95979 0.94728 1.74616 1.14618 0.96838 1.22037 1.85357 1.33817 1.33116 1.44775 1.31271 0.94028 0.89904 0.87748 1.19681 0.87053 0.93482 0.90713 1.44204 1.64502 1.20459 1.00603 1.18795 1.25214 0.87734 1.10888 0.89392 1.25382 0.96657 0.95162 0.97888 1.69861 1.32426 1.13927 1.35862 0.86996 0.85172 0.76381 0.81204 1.20571 1.22511 1.18779 1.21243 0.93782 0.95601 0.87358 1.22252 1.05441 1.01160 0.88677 1.24285 0.79367 0.75170 0.90263 1.90623 1.32896 1.57703 1.59023 1.86574 1.48843 1.59663 1.32924 1.23181 1.02669 0.98996 0.81119 1.71817 1.15590 1.12234 1.23300 0.91098 0.91595 0.91536 0.90033 0.89997 0.91172 0.90762 0.91386 0.88675 0.88173 0.92184 0.91151 0.92392 0.88001 0.87241 0.92131 0.92233 0.88569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.92 37.16 0.37 -0.69 16 2 C -0.10 -0.87 6.36 37.16 0.24 -0.63 16 3 S -0.22 -2.90 20.99 -107.50 -2.26 -5.16 16 4 C 0.03 0.46 3.32 -27.87 -0.09 0.36 16 5 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 6 C -0.14 -1.47 9.08 37.16 0.34 -1.13 16 7 C 0.17 2.84 6.84 -156.37 -1.07 1.77 16 8 N -0.37 -6.98 11.96 30.90 0.37 -6.61 16 9 O 0.09 1.71 11.31 18.09 0.20 1.91 16 10 C 0.19 3.46 7.93 -13.06 -0.10 3.35 16 11 C 0.22 3.80 6.34 -5.20 -0.03 3.77 16 12 N -0.58 -12.31 2.07 -174.61 -0.36 -12.68 16 13 C -0.30 -7.60 9.91 -15.06 -0.15 -7.75 16 14 H 0.09 2.45 8.06 -52.48 -0.42 2.02 16 15 C 0.05 1.42 5.31 -17.43 -0.09 1.32 16 16 N -0.88 -25.46 13.97 55.49 0.78 -24.68 16 17 Si 0.87 21.07 25.01 -169.99 -4.25 16.81 16 18 H -0.28 -6.86 6.67 56.52 0.38 -6.48 16 19 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 20 H -0.26 -6.05 7.11 56.52 0.40 -5.65 16 21 C 0.15 3.03 3.83 -4.04 -0.02 3.01 16 22 C -0.14 -2.61 6.14 -27.88 -0.17 -2.78 16 23 C 0.47 8.75 7.96 36.01 0.29 9.03 16 24 O -0.51 -10.65 15.73 -18.75 -0.29 -10.95 16 25 O -0.36 -6.00 10.57 -39.25 -0.41 -6.42 16 26 C 0.03 0.42 10.56 101.05 1.07 1.49 16 27 N -0.49 -8.56 10.81 -9.87 -0.11 -8.67 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 32 H 0.08 0.61 7.14 -51.93 -0.37 0.24 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.54 6.92 -51.93 -0.36 0.18 16 36 H 0.10 1.38 7.83 -51.93 -0.41 0.98 16 37 H 0.10 1.57 8.08 -51.93 -0.42 1.15 16 38 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.07 1.65 3.20 -51.93 -0.17 1.48 16 40 H 0.06 1.10 7.81 -51.93 -0.41 0.70 16 41 H 0.10 1.89 7.25 -51.93 -0.38 1.52 16 42 H 0.11 2.28 8.14 -51.93 -0.42 1.85 16 43 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 44 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 45 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 390.94 15.07 5.89 5.89 Total: -1.00 -31.54 390.94 -6.61 -38.16 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -6.74 Total: 1.25 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: 0.57 Total: 11.13 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: 0.68 Total: -52.63 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.51 Total: -15.45 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.25 Total: 16.81 kcal Atomic # 16 Polarization: -2.90 SS G_CDS: -2.26 Total: -5.16 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.54 -6.61 -38.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879473705.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.109 kcal (2) G-P(sol) polarization free energy of solvation -31.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds