Wall clock time and date at job start Wed Apr 1 2020 02:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81402 * 109.47056 * 2 1 4 4 C 1.81396 * 103.00149 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47242 * 54.99652 * 4 3 2 6 6 C 1.53011 * 109.47039 * 295.00019 * 4 3 2 7 7 C 1.50705 * 109.47382 * 175.00168 * 4 3 2 8 8 N 1.29939 * 126.28632 * 45.02161 * 7 4 3 9 9 O 1.21305 * 110.25021 * 180.02562 * 8 7 4 10 10 C 1.33645 * 109.80905 * 359.97438 * 9 8 7 11 11 C 1.50697 * 126.54780 * 179.97438 * 10 9 8 12 12 N 1.46496 * 109.47161 * 275.74868 * 11 10 9 13 13 C 1.36938 * 119.99834 * 84.73338 * 12 11 10 14 14 H 1.08003 * 120.00125 * 322.21405 * 13 12 11 15 15 C 1.38817 * 119.99770 * 142.22161 * 13 12 11 16 16 N 1.31620 * 119.99688 * 158.26680 * 15 13 12 17 17 Si 1.86789 * 120.00151 * 338.25920 * 15 13 12 18 18 H 1.48507 * 109.46813 * 95.31518 * 17 15 13 19 19 H 1.48500 * 109.47638 * 215.31274 * 17 15 13 20 20 H 1.48501 * 109.47490 * 335.31917 * 17 15 13 21 21 C 1.46497 * 120.00099 * 264.72944 * 12 11 10 22 22 C 1.53009 * 109.46729 * 90.00137 * 21 12 11 23 23 C 1.50703 * 109.46609 * 180.02562 * 22 21 12 24 24 O 1.20821 * 120.00400 * 359.97438 * 23 22 21 25 25 O 1.34228 * 119.99534 * 180.02562 * 23 22 21 26 26 C 1.45208 * 116.99907 * 179.97438 * 25 23 22 27 27 N 1.31129 * 106.89838 * 0.22738 * 10 9 8 28 28 H 1.08999 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47062 * 299.99919 * 1 2 3 30 30 H 1.09001 * 109.47430 * 59.99639 * 1 2 3 31 31 H 1.09000 * 109.47456 * 240.00299 * 2 1 3 32 32 H 1.08991 * 109.47468 * 119.99583 * 2 1 3 33 33 H 1.08995 * 109.47155 * 180.02562 * 6 4 3 34 34 H 1.08998 * 109.46804 * 299.99901 * 6 4 3 35 35 H 1.08997 * 109.47020 * 59.99622 * 6 4 3 36 36 H 1.09002 * 109.46854 * 155.75069 * 11 10 9 37 37 H 1.09005 * 109.47198 * 35.75218 * 11 10 9 38 38 H 0.96995 * 120.00027 * 179.97438 * 16 15 13 39 39 H 1.09000 * 109.47221 * 209.99885 * 21 12 11 40 40 H 1.08992 * 109.47454 * 330.00607 * 21 12 11 41 41 H 1.08991 * 109.47140 * 299.99703 * 22 21 12 42 42 H 1.08992 * 109.47276 * 60.00194 * 22 21 12 43 43 H 1.09000 * 109.46877 * 299.99348 * 26 25 23 44 44 H 1.08999 * 109.47077 * 59.99713 * 26 25 23 45 45 H 1.09003 * 109.46869 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9370 1.5059 -0.0008 5 1 4.2313 0.8794 -0.8428 6 6 4.3757 0.8425 1.3064 7 6 4.5957 2.8557 -0.1247 8 7 4.2735 3.9315 0.5291 9 8 4.9933 4.8521 0.2035 10 6 5.8700 4.4381 -0.7164 11 6 6.9358 5.2718 -1.3797 12 7 6.3561 5.9909 -2.5167 13 6 5.7210 7.1877 -2.3182 14 1 5.1144 7.3376 -1.4372 15 6 5.8568 8.2084 -3.2492 16 7 4.9567 9.1667 -3.3111 17 14 7.3170 8.2219 -4.4139 18 1 6.9298 7.5892 -5.7005 19 1 7.7414 9.6236 -4.6597 20 1 8.4408 7.4635 -3.8079 21 6 6.4559 5.4297 -3.8663 22 6 5.2420 4.5391 -4.1392 23 6 5.3450 3.9612 -5.5272 24 8 6.2917 4.2341 -6.2265 25 8 4.3844 3.1442 -5.9870 26 6 4.5489 2.6252 -7.3331 27 7 5.6219 3.1692 -0.9355 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8899 33 1 5.4587 0.7201 1.3061 34 1 4.0814 1.4690 2.1483 35 1 3.8993 -0.1338 1.3960 36 1 7.7383 4.6231 -1.7309 37 1 7.3355 5.9884 -0.6621 38 1 5.0517 9.8801 -3.9614 39 1 6.4837 6.2394 -4.5954 40 1 7.3669 4.8368 -3.9468 41 1 5.2142 3.7294 -3.4102 42 1 4.3310 5.1319 -4.0587 43 1 4.5910 3.4543 -8.0395 44 1 5.4738 2.0514 -7.3907 45 1 3.7055 1.9801 -7.5794 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879473705.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:36 Heat of formation + Delta-G solvation = -16.985263 kcal Electronic energy + Delta-G solvation = -28420.152957 eV Core-core repulsion = 24374.803455 eV Total energy + Delta-G solvation = -4045.349502 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.48884 -41.55506 -38.54057 -37.49846 -37.31423 -34.98091 -33.97775 -33.74071 -32.99108 -31.90270 -29.01040 -28.45771 -26.22739 -26.06583 -24.67761 -24.39050 -23.38129 -21.89264 -21.81784 -19.16634 -18.97169 -18.64395 -18.25524 -17.86681 -17.64735 -17.44788 -17.10052 -16.23138 -15.98402 -15.90459 -15.73029 -15.49835 -15.20880 -14.80985 -14.53481 -14.31153 -14.22898 -13.92511 -13.73838 -13.61101 -13.44488 -13.27472 -13.03818 -12.94176 -12.86084 -12.62337 -12.45729 -12.35962 -12.28147 -12.11447 -12.01199 -11.90758 -11.83869 -11.65594 -11.48403 -11.02392 -10.84162 -10.64796 -9.16072 -8.81632 -8.25407 -5.74340 0.11036 0.42369 1.08069 1.31705 1.37843 1.45373 1.51972 1.54507 1.70560 2.03700 2.39556 2.52099 2.96686 3.15849 3.24323 3.75164 3.79077 3.83258 3.98803 4.03130 4.06641 4.12374 4.27106 4.28044 4.29461 4.43854 4.46547 4.52667 4.60192 4.65101 4.67704 4.73329 4.77603 4.84398 4.86303 4.90627 4.95501 5.00408 5.06958 5.23326 5.29214 5.83032 6.13346 6.63503 6.77369 7.21864 7.45435 7.80598 8.91875 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009966 B = 0.003832 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2809.013295 B = 7304.819832 C = 8943.995528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.078 4.078 3 S -0.291 6.291 4 C 0.041 3.959 5 H 0.125 0.875 6 C -0.134 4.134 7 C 0.175 3.825 8 N -0.395 5.395 9 O 0.062 5.938 10 C 0.192 3.808 11 C 0.221 3.779 12 N -0.588 5.588 13 C -0.275 4.275 14 H 0.054 0.946 15 C 0.003 3.997 16 N -0.934 5.934 17 Si 0.931 3.069 18 H -0.288 1.288 19 H -0.306 1.306 20 H -0.239 1.239 21 C 0.144 3.856 22 C -0.126 4.126 23 C 0.472 3.528 24 O -0.535 6.535 25 O -0.367 6.367 26 C 0.026 3.974 27 N -0.492 5.492 28 H 0.099 0.901 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.098 0.902 36 H 0.132 0.868 37 H 0.114 0.886 38 H 0.266 0.734 39 H 0.045 0.955 40 H 0.084 0.916 41 H 0.110 0.890 42 H 0.087 0.913 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.231 -22.427 3.279 22.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.226 4.226 3 S -0.066 6.066 4 C -0.089 4.089 5 H 0.143 0.857 6 C -0.193 4.193 7 C -0.099 4.099 8 N -0.107 5.107 9 O 0.008 5.992 10 C -0.031 4.031 11 C 0.092 3.908 12 N -0.308 5.308 13 C -0.404 4.404 14 H 0.071 0.929 15 C -0.196 4.196 16 N -0.576 5.576 17 Si 0.760 3.240 18 H -0.216 1.216 19 H -0.235 1.235 20 H -0.162 1.162 21 C 0.019 3.981 22 C -0.166 4.166 23 C 0.316 3.684 24 O -0.425 6.425 25 O -0.284 6.284 26 C -0.067 4.067 27 N -0.228 5.228 28 H 0.117 0.883 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.113 0.887 32 H 0.121 0.879 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.117 0.883 36 H 0.150 0.850 37 H 0.132 0.868 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.102 0.898 41 H 0.128 0.872 42 H 0.105 0.895 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.172 -21.601 3.360 21.969 hybrid contribution 0.902 -0.066 -1.029 1.370 sum -1.270 -21.667 2.332 21.829 Atomic orbital electron populations 1.21530 0.91415 1.03888 1.02588 1.23499 1.00619 0.91949 1.06533 1.87789 1.03691 1.16979 1.98130 1.21285 0.92849 0.89662 1.05069 0.85701 1.22052 1.02842 1.01396 0.93056 1.25278 0.94383 0.96943 0.93298 1.74628 1.15220 0.97402 1.23400 1.85332 1.34455 1.33845 1.45581 1.31244 0.93933 0.90251 0.87720 1.20016 0.87241 0.93989 0.89555 1.44183 1.64896 1.19682 1.02034 1.18581 1.23779 0.89045 1.08958 0.92863 1.25915 0.98616 0.95197 0.99895 1.69978 1.34487 1.15387 1.37725 0.86070 0.83077 0.75817 0.79085 1.21641 1.23468 1.16175 1.21221 0.95409 0.95173 0.86263 1.22015 1.03772 1.00924 0.89872 1.23978 0.79407 0.75238 0.89769 1.90613 1.33826 1.58596 1.59440 1.86540 1.47795 1.58894 1.35146 1.23586 1.04956 0.99438 0.78730 1.71834 1.15841 1.11878 1.23229 0.88268 0.92250 0.92690 0.88669 0.87918 0.90514 0.92152 0.88334 0.85045 0.86822 0.92471 0.93686 0.89812 0.87165 0.89488 0.92368 0.91362 0.84808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.92 71.98 0.71 -1.09 16 2 C -0.08 -1.16 6.36 71.98 0.46 -0.70 16 3 S -0.29 -7.55 20.99 -56.49 -1.19 -8.74 16 4 C 0.04 1.01 3.32 29.85 0.10 1.11 16 5 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 6 C -0.13 -2.44 9.08 71.99 0.65 -1.78 16 7 C 0.17 5.72 6.84 138.47 0.95 6.67 16 8 N -0.40 -14.91 11.96 -60.32 -0.72 -15.63 16 9 O 0.06 2.45 11.31 74.81 0.85 3.29 16 10 C 0.19 6.70 7.93 88.38 0.70 7.40 16 11 C 0.22 7.20 6.34 85.63 0.54 7.74 16 12 N -0.59 -24.59 2.07 -706.34 -1.46 -26.05 16 13 C -0.27 -14.25 9.91 84.03 0.83 -13.42 16 14 H 0.05 3.11 8.06 -2.91 -0.02 3.08 16 15 C 0.00 0.15 5.31 84.86 0.45 0.60 16 16 N -0.93 -56.01 13.97 21.65 0.30 -55.71 16 17 Si 0.93 44.05 25.01 68.60 1.72 45.76 16 18 H -0.29 -14.02 6.67 99.48 0.66 -13.35 16 19 H -0.31 -14.76 7.11 99.48 0.71 -14.05 16 20 H -0.24 -10.20 7.11 99.48 0.71 -9.50 16 21 C 0.14 5.82 3.83 86.38 0.33 6.15 16 22 C -0.13 -4.78 6.14 29.85 0.18 -4.59 16 23 C 0.47 17.14 7.96 71.24 0.57 17.70 16 24 O -0.53 -21.37 15.73 21.98 0.35 -21.02 16 25 O -0.37 -11.49 10.57 -51.40 -0.54 -12.03 16 26 C 0.03 0.57 10.56 113.37 1.20 1.77 16 27 N -0.49 -16.36 10.81 -303.20 -3.28 -19.63 16 28 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.10 1.12 7.14 -2.39 -0.02 1.10 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.10 1.19 6.92 -2.39 -0.02 1.17 16 36 H 0.13 3.35 7.83 -2.39 -0.02 3.34 16 37 H 0.11 3.39 8.08 -2.38 -0.02 3.37 16 38 H 0.27 15.22 8.31 -92.71 -0.77 14.44 16 39 H 0.05 2.08 3.20 -2.39 -0.01 2.07 16 40 H 0.08 2.95 7.81 -2.39 -0.02 2.93 16 41 H 0.11 3.97 7.25 -2.39 -0.02 3.95 16 42 H 0.09 3.70 8.14 -2.39 -0.02 3.68 16 43 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 44 H 0.07 1.41 8.13 -2.39 -0.02 1.39 16 45 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -71.12 390.94 4.65 -66.47 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.95 Total: 15.73 kcal Atomic # 6 Polarization: 19.88 SS G_CDS: 7.68 Total: 27.55 kcal Atomic # 7 Polarization: -111.86 SS G_CDS: -5.16 Total: -117.02 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: 0.65 Total: -29.76 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.72 Total: 45.76 kcal Atomic # 16 Polarization: -7.55 SS G_CDS: -1.19 Total: -8.74 kcal Total: -71.12 4.65 -66.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879473705.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.487 kcal (2) G-P(sol) polarization free energy of solvation -71.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds