Wall clock time and date at job start Wed Apr 1 2020 02:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47161 * 2 1 4 4 C 1.34784 * 119.99991 * 82.52443 * 3 2 1 5 5 O 1.21548 * 120.00115 * 183.18785 * 4 3 2 6 6 C 1.47888 * 119.99794 * 3.18718 * 4 3 2 7 7 C 1.38808 * 119.32308 * 172.74822 * 6 4 3 8 8 C 1.39855 * 118.37269 * 180.02562 * 7 6 4 9 9 C 1.41393 * 122.95691 * 180.02562 * 8 7 6 10 10 O 1.35229 * 120.99401 * 359.95809 * 9 8 7 11 11 N 1.32495 * 118.01621 * 179.97438 * 9 8 7 12 12 C 1.32360 * 121.48315 * 359.97438 * 11 9 8 13 13 N 1.31301 * 123.09784 * 0.02562 * 12 11 9 14 14 C 1.33701 * 120.36570 * 359.97438 * 13 12 11 15 15 C 1.40612 * 122.61469 * 180.08762 * 14 13 12 16 16 N 1.30913 * 120.15810 * 179.97438 * 15 14 13 17 17 C 1.46495 * 120.00254 * 262.52326 * 3 2 1 18 18 C 1.53949 * 113.74253 * 223.23645 * 17 3 2 19 19 N 1.47808 * 86.03654 * 222.08127 * 18 17 3 20 20 C 1.36935 * 134.45952 * 204.64471 * 19 18 17 21 21 H 1.08003 * 120.00210 * 179.87000 * 20 19 18 22 22 C 1.38814 * 120.00034 * 359.86779 * 20 19 18 23 23 N 1.31620 * 119.99764 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00267 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47108 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47284 * 119.99872 * 24 22 20 27 27 H 1.48496 * 109.47245 * 239.99792 * 24 22 20 28 28 C 1.47584 * 91.04977 * 24.54864 * 19 18 17 29 29 H 1.08994 * 109.47071 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47234 * 299.99762 * 1 2 3 31 31 H 1.08994 * 109.46845 * 59.99864 * 1 2 3 32 32 H 1.08998 * 109.47234 * 240.00237 * 2 1 3 33 33 H 1.09004 * 109.47339 * 120.00058 * 2 1 3 34 34 H 1.07994 * 120.81110 * 0.02676 * 7 6 4 35 35 H 0.96704 * 113.99460 * 270.02238 * 10 9 8 36 36 H 1.08004 * 118.45007 * 180.02562 * 12 11 9 37 37 H 1.08004 * 119.92018 * 359.95046 * 15 14 13 38 38 H 1.08998 * 112.94385 * 354.82793 * 17 3 2 39 39 H 1.08998 * 113.76942 * 336.34979 * 18 17 3 40 40 H 1.09002 * 113.76902 * 107.74616 * 18 17 3 41 41 H 0.96998 * 120.00019 * 179.97438 * 23 22 20 42 42 H 1.09004 * 113.76796 * 221.14765 * 28 19 18 43 43 H 1.09001 * 113.76918 * 89.75822 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0998 2.0672 1.1573 5 8 2.4497 3.2312 1.1506 6 6 1.7635 1.4036 2.4355 7 6 1.9958 2.0715 3.6299 8 6 1.6709 1.4251 4.8268 9 6 1.8663 2.0147 6.0970 10 8 2.3881 3.2566 6.2155 11 7 1.5231 1.3140 7.1679 12 6 1.0114 0.0978 7.0633 13 7 0.8083 -0.4980 5.9110 14 6 1.1193 0.1196 4.7667 15 6 0.9202 -0.4730 3.5072 16 7 1.2417 0.1760 2.4167 17 6 2.4182 2.0168 -1.2579 18 6 3.7231 2.8272 -1.1555 19 7 3.0356 3.8441 -1.9789 20 6 3.4542 4.8348 -2.8266 21 1 2.7292 5.4616 -3.3244 22 6 4.8105 5.0333 -3.0460 23 7 5.6940 4.2697 -2.4389 24 14 5.3816 6.3852 -4.2017 25 1 4.2006 7.0976 -4.7522 26 1 6.2353 7.3452 -3.4570 27 1 6.1629 5.7879 -5.3144 28 6 1.7176 3.3617 -1.5229 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.4172 3.0658 3.6348 35 1 3.3526 3.2730 6.2846 36 1 0.7485 -0.4294 7.9685 37 1 0.5012 -1.4662 3.4393 38 1 2.3915 1.3334 -2.1066 39 1 3.9535 3.1630 -0.1444 40 1 4.5719 2.3579 -1.6530 41 1 6.6417 4.4082 -2.5925 42 1 0.9680 3.3185 -2.3131 43 1 1.3575 3.8550 -0.6200 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957333892.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:34 Heat of formation + Delta-G solvation = 105.680731 kcal Electronic energy + Delta-G solvation = -29885.945611 eV Core-core repulsion = 25742.764105 eV Total energy + Delta-G solvation = -4143.181506 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.19755 -40.41347 -38.92209 -38.18257 -36.79719 -35.40494 -33.79763 -32.95214 -32.02945 -30.90030 -29.95190 -27.46234 -26.04806 -25.71156 -24.65189 -23.63765 -23.19511 -23.06013 -20.95305 -20.02524 -19.46728 -18.99157 -17.78758 -17.20576 -16.71384 -16.41207 -16.10107 -15.65351 -15.22139 -14.99730 -14.94975 -14.71768 -14.55894 -14.48349 -13.79286 -13.64406 -13.49572 -13.37094 -12.76083 -12.65624 -12.34100 -12.19135 -11.60405 -11.40391 -11.37498 -11.31520 -11.21193 -11.14218 -10.82984 -10.65465 -10.52560 -10.20816 -10.02078 -9.91109 -9.80969 -9.42415 -9.22207 -8.90677 -8.61927 -8.04417 -6.73184 -5.67719 -2.98096 -0.58029 -0.06216 1.08537 2.16647 2.66106 3.09159 3.13237 3.43873 3.45040 3.49415 3.51879 3.60497 3.63698 3.81849 4.03427 4.19507 4.53185 4.56929 4.64813 4.98732 5.13546 5.24912 5.28259 5.34450 5.47590 5.59328 5.60089 5.66945 5.72025 5.77971 5.91213 5.97524 6.14881 6.28932 6.40363 6.48293 6.63750 6.69271 6.76102 6.97210 7.21074 7.35538 7.46538 7.62154 7.65317 7.77938 8.06613 8.44264 9.13839 9.79837 10.70988 11.49767 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.017264 B = 0.002839 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.461324 B = 9859.490373 C =11089.858800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.099 3.901 3 N -0.579 5.579 4 C 0.559 3.441 5 O -0.504 6.504 6 C 0.062 3.938 7 C -0.047 4.047 8 C -0.161 4.161 9 C 0.423 3.577 10 O -0.464 6.464 11 N -0.538 5.538 12 C 0.327 3.673 13 N -0.497 5.497 14 C 0.128 3.872 15 C 0.145 3.855 16 N -0.414 5.414 17 C 0.087 3.913 18 C 0.156 3.844 19 N -0.604 5.604 20 C -0.214 4.214 21 H 0.080 0.920 22 C -0.010 4.010 23 N -0.920 5.920 24 Si 0.911 3.089 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.112 3.888 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.165 0.835 35 H 0.419 0.581 36 H 0.207 0.793 37 H 0.185 0.815 38 H 0.106 0.894 39 H 0.054 0.946 40 H 0.067 0.933 41 H 0.251 0.749 42 H 0.037 0.963 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.622 -14.334 17.864 24.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 N -0.311 5.311 4 C 0.344 3.656 5 O -0.379 6.379 6 C -0.064 4.064 7 C -0.070 4.070 8 C -0.172 4.172 9 C 0.221 3.779 10 O -0.273 6.273 11 N -0.264 5.264 12 C 0.038 3.962 13 N -0.213 5.213 14 C -0.003 4.003 15 C -0.029 4.029 16 N -0.126 5.126 17 C -0.016 4.016 18 C 0.030 3.970 19 N -0.330 5.330 20 C -0.342 4.342 21 H 0.097 0.903 22 C -0.207 4.207 23 N -0.568 5.568 24 Si 0.742 3.258 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.015 4.015 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.124 0.876 34 H 0.183 0.817 35 H 0.282 0.718 36 H 0.223 0.777 37 H 0.202 0.798 38 H 0.124 0.876 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.081 -14.114 17.460 24.610 hybrid contribution 1.088 1.527 -0.283 1.896 sum -8.993 -12.587 17.177 23.116 Atomic orbital electron populations 1.22037 0.96175 1.01369 1.01467 1.22055 0.94557 0.82339 1.03411 1.48004 1.62311 1.14028 1.06747 1.17647 0.79388 0.86024 0.82523 1.90906 1.45925 1.15216 1.85846 1.21448 0.99137 0.90974 0.94846 1.22103 0.94235 1.00959 0.89697 1.19745 1.05074 0.96773 0.95589 1.19593 0.88106 0.83581 0.86576 1.84624 1.27993 1.19959 1.94705 1.68059 1.15513 1.08802 1.34018 1.24916 0.88814 0.86430 0.96020 1.68711 1.18079 1.36517 0.97986 1.20110 0.94578 0.90406 0.95172 1.23244 0.95151 1.00209 0.84323 1.68196 1.07521 1.07232 1.29674 1.24184 1.00107 0.93625 0.83675 1.22728 0.92238 0.86499 0.95534 1.45685 1.00577 1.37911 1.48810 1.19040 0.91095 1.07740 1.16343 0.90265 1.24774 0.95577 0.99728 1.00579 1.69841 1.00402 1.40662 1.45890 0.86048 0.78432 0.81278 0.80035 1.20518 1.21835 1.21803 1.22915 0.90525 0.91170 0.96855 0.92201 0.92703 0.93205 0.91392 0.87563 0.81718 0.71819 0.77688 0.79847 0.87572 0.92860 0.91446 0.93858 0.94465 0.93366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.55 37.16 0.35 -1.29 16 2 C 0.10 1.20 5.74 -4.04 -0.02 1.18 16 3 N -0.58 -9.41 2.75 -169.00 -0.47 -9.88 16 4 C 0.56 9.57 7.00 -12.31 -0.09 9.49 16 5 O -0.50 -10.64 12.01 5.32 0.06 -10.57 16 6 C 0.06 0.83 6.51 -83.02 -0.54 0.29 16 7 C -0.05 -0.56 9.23 -38.77 -0.36 -0.92 16 8 C -0.16 -1.70 5.76 -106.71 -0.61 -2.31 16 9 C 0.42 4.10 7.91 -16.07 -0.13 3.98 16 10 O -0.46 -3.81 13.04 -17.38 -0.23 -4.04 16 11 N -0.54 -5.07 10.43 -14.23 -0.15 -5.22 16 12 C 0.33 2.55 12.21 -92.09 -1.12 1.43 16 13 N -0.50 -4.48 10.46 -12.54 -0.13 -4.61 16 14 C 0.13 1.27 6.64 -84.78 -0.56 0.70 16 15 C 0.14 1.28 11.26 -17.05 -0.19 1.09 16 16 N -0.41 -4.51 4.14 -9.47 -0.04 -4.55 16 17 C 0.09 1.71 4.60 -70.15 -0.32 1.39 16 18 C 0.16 3.90 6.79 -2.84 -0.02 3.88 16 19 N -0.60 -16.42 3.70 -177.88 -0.66 -17.08 16 20 C -0.21 -6.29 10.70 -15.06 -0.16 -6.45 16 21 H 0.08 2.25 7.83 -52.48 -0.41 1.84 16 22 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 23 N -0.92 -28.19 11.39 55.49 0.63 -27.56 16 24 Si 0.91 22.84 29.55 -169.99 -5.02 17.82 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 C 0.11 2.51 8.27 -2.97 -0.02 2.49 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.64 6.68 -51.93 -0.35 0.30 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.76 7.85 -51.93 -0.41 0.35 16 33 H 0.11 1.20 5.26 -52.37 -0.28 0.92 16 34 H 0.17 1.99 7.40 -52.49 -0.39 1.61 16 35 H 0.42 1.32 9.06 45.56 0.41 1.73 16 36 H 0.21 0.80 8.06 -52.48 -0.42 0.37 16 37 H 0.18 1.06 8.06 -52.48 -0.42 0.64 16 38 H 0.11 1.93 7.89 -51.93 -0.41 1.52 16 39 H 0.05 1.44 5.68 -51.93 -0.29 1.14 16 40 H 0.07 1.83 7.17 -51.93 -0.37 1.46 16 41 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.05 1.14 6.33 -51.93 -0.33 0.81 16 LS Contribution 356.45 15.07 5.37 5.37 Total: -1.00 -37.01 356.45 -8.59 -45.60 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -4.07 Total: 0.19 kcal Atomic # 6 Polarization: 18.43 SS G_CDS: -3.90 Total: 14.53 kcal Atomic # 7 Polarization: -68.09 SS G_CDS: -0.81 Total: -68.90 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.16 Total: -14.61 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -37.01 -8.59 -45.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957333892.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.279 kcal (2) G-P(sol) polarization free energy of solvation -37.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds