Wall clock time and date at job start Wed Apr 1 2020 02:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47161 * 2 1 4 4 C 1.34784 * 119.99991 * 82.52443 * 3 2 1 5 5 O 1.21548 * 120.00115 * 183.18785 * 4 3 2 6 6 C 1.47888 * 119.99794 * 3.18718 * 4 3 2 7 7 C 1.38808 * 119.32308 * 172.74822 * 6 4 3 8 8 C 1.39855 * 118.37269 * 180.02562 * 7 6 4 9 9 C 1.41393 * 122.95691 * 180.02562 * 8 7 6 10 10 O 1.35229 * 120.99401 * 359.95809 * 9 8 7 11 11 N 1.32495 * 118.01621 * 179.97438 * 9 8 7 12 12 C 1.32360 * 121.48315 * 359.97438 * 11 9 8 13 13 N 1.31301 * 123.09784 * 0.02562 * 12 11 9 14 14 C 1.33701 * 120.36570 * 359.97438 * 13 12 11 15 15 C 1.40612 * 122.61469 * 180.08762 * 14 13 12 16 16 N 1.30913 * 120.15810 * 179.97438 * 15 14 13 17 17 C 1.46495 * 120.00254 * 262.52326 * 3 2 1 18 18 C 1.53949 * 113.74253 * 223.23645 * 17 3 2 19 19 N 1.47808 * 86.03654 * 222.08127 * 18 17 3 20 20 C 1.36935 * 134.45952 * 204.64471 * 19 18 17 21 21 H 1.08003 * 120.00210 * 179.87000 * 20 19 18 22 22 C 1.38814 * 120.00034 * 359.86779 * 20 19 18 23 23 N 1.31620 * 119.99764 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00267 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47108 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47284 * 119.99872 * 24 22 20 27 27 H 1.48496 * 109.47245 * 239.99792 * 24 22 20 28 28 C 1.47584 * 91.04977 * 24.54864 * 19 18 17 29 29 H 1.08994 * 109.47071 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47234 * 299.99762 * 1 2 3 31 31 H 1.08994 * 109.46845 * 59.99864 * 1 2 3 32 32 H 1.08998 * 109.47234 * 240.00237 * 2 1 3 33 33 H 1.09004 * 109.47339 * 120.00058 * 2 1 3 34 34 H 1.07994 * 120.81110 * 0.02676 * 7 6 4 35 35 H 0.96704 * 113.99460 * 270.02238 * 10 9 8 36 36 H 1.08004 * 118.45007 * 180.02562 * 12 11 9 37 37 H 1.08004 * 119.92018 * 359.95046 * 15 14 13 38 38 H 1.08998 * 112.94385 * 354.82793 * 17 3 2 39 39 H 1.08998 * 113.76942 * 336.34979 * 18 17 3 40 40 H 1.09002 * 113.76902 * 107.74616 * 18 17 3 41 41 H 0.96998 * 120.00019 * 179.97438 * 23 22 20 42 42 H 1.09004 * 113.76796 * 221.14765 * 28 19 18 43 43 H 1.09001 * 113.76918 * 89.75822 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0998 2.0672 1.1573 5 8 2.4497 3.2312 1.1506 6 6 1.7635 1.4036 2.4355 7 6 1.9958 2.0715 3.6299 8 6 1.6709 1.4251 4.8268 9 6 1.8663 2.0147 6.0970 10 8 2.3881 3.2566 6.2155 11 7 1.5231 1.3140 7.1679 12 6 1.0114 0.0978 7.0633 13 7 0.8083 -0.4980 5.9110 14 6 1.1193 0.1196 4.7667 15 6 0.9202 -0.4730 3.5072 16 7 1.2417 0.1760 2.4167 17 6 2.4182 2.0168 -1.2579 18 6 3.7231 2.8272 -1.1555 19 7 3.0356 3.8441 -1.9789 20 6 3.4542 4.8348 -2.8266 21 1 2.7292 5.4616 -3.3244 22 6 4.8105 5.0333 -3.0460 23 7 5.6940 4.2697 -2.4389 24 14 5.3816 6.3852 -4.2017 25 1 4.2006 7.0976 -4.7522 26 1 6.2353 7.3452 -3.4570 27 1 6.1629 5.7879 -5.3144 28 6 1.7176 3.3617 -1.5229 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.4172 3.0658 3.6348 35 1 3.3526 3.2730 6.2846 36 1 0.7485 -0.4294 7.9685 37 1 0.5012 -1.4662 3.4393 38 1 2.3915 1.3334 -2.1066 39 1 3.9535 3.1630 -0.1444 40 1 4.5719 2.3579 -1.6530 41 1 6.6417 4.4082 -2.5925 42 1 0.9680 3.3185 -2.3131 43 1 1.3575 3.8550 -0.6200 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957333892.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:33 Heat of formation + Delta-G solvation = 77.224387 kcal Electronic energy + Delta-G solvation = -29887.179571 eV Core-core repulsion = 25742.764105 eV Total energy + Delta-G solvation = -4144.415466 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.97838 -41.66474 -39.96162 -38.94669 -38.36615 -36.70363 -34.57506 -34.17260 -33.71240 -31.78372 -31.18472 -29.29699 -27.04732 -26.60157 -26.54993 -25.11980 -24.28953 -23.97361 -22.28263 -21.19282 -20.58037 -19.74614 -18.78308 -18.72434 -18.18674 -17.57308 -17.04686 -17.00525 -16.55586 -16.23665 -16.10889 -15.85539 -15.60830 -15.52533 -15.28372 -14.82834 -14.57491 -14.31302 -14.07296 -14.05126 -13.67808 -13.40418 -13.34760 -12.97238 -12.80473 -12.68174 -12.44965 -12.14179 -12.08312 -12.01380 -11.96685 -11.83482 -11.49259 -11.35029 -11.26412 -10.83844 -10.69135 -10.22364 -9.79062 -9.42084 -8.88805 -7.90484 -5.23898 -1.34632 -0.85916 0.29093 1.26864 1.43179 1.45817 1.56015 1.84887 1.98777 2.13803 2.48091 2.74318 2.75563 2.87181 2.96672 3.19204 3.28628 3.40567 3.50683 3.68331 3.85000 3.96667 4.17442 4.25322 4.32184 4.35369 4.51124 4.59233 4.66691 4.81155 4.84027 4.88884 4.98491 5.02743 5.06337 5.23731 5.27317 5.39050 5.49550 5.55030 5.62501 5.89230 5.92618 6.27024 6.34098 6.51333 6.77245 6.91082 7.13516 7.59336 8.56918 9.26988 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.017264 B = 0.002839 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.461324 B = 9859.490373 C =11089.858800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.095 3.905 3 N -0.579 5.579 4 C 0.555 3.445 5 O -0.557 6.557 6 C 0.045 3.955 7 C -0.046 4.046 8 C -0.173 4.173 9 C 0.424 3.576 10 O -0.474 6.474 11 N -0.547 5.547 12 C 0.333 3.667 13 N -0.499 5.499 14 C 0.130 3.870 15 C 0.160 3.840 16 N -0.416 5.416 17 C 0.123 3.877 18 C 0.155 3.845 19 N -0.632 5.632 20 C -0.233 4.233 21 H 0.083 0.917 22 C -0.070 4.070 23 N -0.953 5.953 24 Si 0.984 3.016 25 H -0.265 1.265 26 H -0.294 1.294 27 H -0.286 1.286 28 C 0.114 3.886 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.038 0.962 32 H 0.082 0.918 33 H 0.120 0.880 34 H 0.152 0.848 35 H 0.438 0.562 36 H 0.246 0.754 37 H 0.223 0.777 38 H 0.130 0.870 39 H 0.027 0.973 40 H 0.038 0.962 41 H 0.248 0.752 42 H 0.056 0.944 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.320 -16.632 18.938 27.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.026 4.026 3 N -0.309 5.309 4 C 0.342 3.658 5 O -0.436 6.436 6 C -0.080 4.080 7 C -0.069 4.069 8 C -0.184 4.184 9 C 0.223 3.777 10 O -0.286 6.286 11 N -0.274 5.274 12 C 0.046 3.954 13 N -0.216 5.216 14 C -0.002 4.002 15 C -0.014 4.014 16 N -0.128 5.128 17 C 0.018 3.982 18 C 0.029 3.971 19 N -0.359 5.359 20 C -0.362 4.362 21 H 0.100 0.900 22 C -0.262 4.262 23 N -0.602 5.602 24 Si 0.811 3.189 25 H -0.189 1.189 26 H -0.222 1.222 27 H -0.213 1.213 28 C -0.012 4.012 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.100 0.900 33 H 0.138 0.862 34 H 0.170 0.830 35 H 0.305 0.695 36 H 0.262 0.738 37 H 0.239 0.761 38 H 0.147 0.853 39 H 0.045 0.955 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.074 0.926 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -11.806 -16.443 18.551 27.457 hybrid contribution 1.556 2.178 -0.370 2.702 sum -10.250 -14.266 18.181 25.281 Atomic orbital electron populations 1.21970 0.94759 1.03026 1.00445 1.22378 0.95621 0.79731 1.04830 1.48028 1.62072 1.15551 1.05297 1.18216 0.78134 0.85552 0.83892 1.90871 1.48230 1.17635 1.86829 1.20802 1.01793 0.92402 0.92978 1.21964 0.94278 1.00536 0.90151 1.19790 1.05894 0.97444 0.95224 1.19686 0.87780 0.83760 0.86478 1.84575 1.29829 1.19559 1.94629 1.68193 1.15965 1.09546 1.33678 1.25776 0.86779 0.85845 0.96988 1.68822 1.18534 1.36329 0.97912 1.20380 0.93714 0.89949 0.96148 1.23830 0.93442 1.00924 0.83229 1.68097 1.07977 1.06116 1.30587 1.23532 0.95628 0.93100 0.85924 1.22527 0.93803 0.87357 0.93393 1.46093 1.02937 1.37993 1.48839 1.19455 0.91634 1.08404 1.16687 0.89959 1.25694 0.95647 1.02302 1.02581 1.70049 1.00332 1.42331 1.47504 0.84938 0.78035 0.78144 0.77751 1.18940 1.22159 1.21259 1.22959 0.89405 0.92302 0.96537 0.89099 0.93679 0.94277 0.89966 0.86227 0.82995 0.69537 0.73819 0.76093 0.85265 0.95501 0.94347 0.94308 0.92562 0.94810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.55 71.98 0.69 -2.06 16 2 C 0.10 2.12 5.74 86.38 0.50 2.62 16 3 N -0.58 -18.86 2.75 -806.86 -2.22 -21.08 16 4 C 0.55 19.72 7.00 86.80 0.61 20.33 16 5 O -0.56 -25.19 12.01 -3.87 -0.05 -25.24 16 6 C 0.04 1.20 6.51 41.60 0.27 1.47 16 7 C -0.05 -1.13 9.23 22.80 0.21 -0.92 16 8 C -0.17 -3.49 5.76 -21.22 -0.12 -3.61 16 9 C 0.42 7.79 7.91 85.37 0.68 8.46 16 10 O -0.47 -7.64 13.04 -85.11 -1.11 -8.75 16 11 N -0.55 -9.13 10.43 -311.92 -3.25 -12.38 16 12 C 0.33 4.13 12.21 180.86 2.21 6.34 16 13 N -0.50 -7.38 10.46 -193.58 -2.02 -9.41 16 14 C 0.13 2.25 6.64 40.33 0.27 2.52 16 15 C 0.16 2.36 11.26 85.41 0.96 3.32 16 16 N -0.42 -8.30 4.14 -183.87 -0.76 -9.06 16 17 C 0.12 4.88 4.60 46.75 0.21 5.10 16 18 C 0.16 8.18 6.79 86.44 0.59 8.76 16 19 N -0.63 -35.63 3.70 -716.69 -2.65 -38.29 16 20 C -0.23 -14.06 10.70 84.03 0.90 -13.16 16 21 H 0.08 4.74 7.83 -2.91 -0.02 4.72 16 22 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 23 N -0.95 -60.63 11.39 21.65 0.25 -60.38 16 24 Si 0.98 47.96 29.55 68.60 2.03 49.99 16 25 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 26 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 27 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 28 C 0.11 5.22 8.27 86.48 0.72 5.94 16 29 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.04 0.96 6.68 -2.39 -0.02 0.95 16 31 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.08 1.62 7.85 -2.39 -0.02 1.60 16 33 H 0.12 2.41 5.26 -3.26 -0.02 2.39 16 34 H 0.15 4.03 7.40 -2.91 -0.02 4.01 16 35 H 0.44 2.69 9.06 -74.05 -0.67 2.02 16 36 H 0.25 0.84 8.06 -2.91 -0.02 0.82 16 37 H 0.22 1.50 8.06 -2.91 -0.02 1.48 16 38 H 0.13 4.56 7.89 -2.39 -0.02 4.55 16 39 H 0.03 1.57 5.68 -2.39 -0.01 1.56 16 40 H 0.04 2.20 7.17 -2.39 -0.02 2.19 16 41 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 42 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 43 H 0.03 1.67 6.33 -2.39 -0.02 1.66 16 Total: -1.00 -84.38 356.45 -0.23 -84.61 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 0.41 Total: 8.61 kcal Atomic # 6 Polarization: 32.24 SS G_CDS: 9.15 Total: 41.38 kcal Atomic # 7 Polarization: -139.93 SS G_CDS: -10.67 Total: -150.60 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -1.16 Total: -33.99 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 2.03 Total: 49.99 kcal Total: -84.38 -0.23 -84.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957333892.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.835 kcal (2) G-P(sol) polarization free energy of solvation -84.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds