Wall clock time and date at job start Wed Apr 1 2020 02:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.47064 * 126.30557 * 2 1 4 4 C 1.54115 * 110.14628 * 209.03355 * 3 2 1 5 5 C 1.55607 * 104.26927 * 314.86349 * 4 3 2 6 6 H 1.09003 * 111.16325 * 279.97155 * 5 4 3 7 7 C 1.50697 * 111.16685 * 155.74498 * 5 4 3 8 8 O 1.21274 * 119.99973 * 333.93862 * 7 5 4 9 9 N 1.34777 * 119.99804 * 153.93533 * 7 5 4 10 10 C 1.47165 * 120.71326 * 4.79245 * 9 7 5 11 11 C 1.53885 * 108.02739 * 132.75056 * 10 9 7 12 12 H 1.09005 * 112.57589 * 182.22582 * 11 10 9 13 13 C 1.54130 * 107.71372 * 306.32773 * 11 10 9 14 14 C 1.54278 * 104.89220 * 89.41111 * 13 11 10 15 15 C 1.54553 * 104.84695 * 359.81101 * 14 13 11 16 16 H 1.08994 * 112.18078 * 146.40741 * 15 14 13 17 17 C 1.49249 * 120.76786 * 184.87359 * 9 7 5 18 18 N 1.48307 * 107.20862 * 58.36892 * 11 10 9 19 19 C 1.36932 * 128.07809 * 106.70055 * 18 11 10 20 20 H 1.08005 * 119.99607 * 156.03930 * 19 18 11 21 21 C 1.38802 * 120.00230 * 336.04229 * 19 18 11 22 22 N 1.31629 * 120.00074 * 354.56809 * 21 19 18 23 23 Si 1.86802 * 120.00244 * 174.56936 * 21 19 18 24 24 H 1.48505 * 109.47105 * 179.97438 * 23 21 19 25 25 H 1.48495 * 109.46943 * 300.00020 * 23 21 19 26 26 H 1.48502 * 109.47166 * 59.99970 * 23 21 19 27 27 S 1.67001 * 126.30083 * 180.02562 * 2 1 3 28 28 O 1.42101 * 105.13209 * 61.04389 * 27 2 1 29 29 O 1.42099 * 105.27378 * 291.41328 * 27 2 1 30 30 H 1.09000 * 109.47249 * 269.96364 * 1 2 3 31 31 H 1.09000 * 109.46673 * 29.96054 * 1 2 3 32 32 H 1.09000 * 109.47005 * 149.96027 * 1 2 3 33 33 H 1.09003 * 109.35516 * 329.24196 * 3 2 1 34 34 H 1.09004 * 109.35918 * 88.94747 * 3 2 1 35 35 H 1.08991 * 110.51323 * 196.15007 * 4 3 2 36 36 H 1.09002 * 110.44293 * 73.53790 * 4 3 2 37 37 H 1.09004 * 109.74914 * 13.12138 * 10 9 7 38 38 H 1.09003 * 109.75297 * 252.38554 * 10 9 7 39 39 H 1.09001 * 110.50123 * 330.47360 * 13 11 10 40 40 H 1.08999 * 110.27841 * 208.23745 * 13 11 10 41 41 H 1.08996 * 110.36577 * 240.96918 * 14 13 11 42 42 H 1.08993 * 110.45425 * 118.69694 * 14 13 11 43 43 H 1.09003 * 110.51486 * 107.82328 * 17 9 7 44 44 H 1.09000 * 109.75072 * 346.60389 * 17 9 7 45 45 H 0.96993 * 120.00044 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3357 1.1851 0.0000 4 6 3.6695 0.8639 -0.7022 5 6 4.0863 -0.5177 -0.1202 6 1 4.5449 -0.4086 0.8626 7 6 5.0014 -1.2527 -1.0654 8 8 4.9547 -1.0237 -2.2554 9 7 5.8718 -2.1643 -0.5881 10 6 5.8704 -2.5308 0.8372 11 6 5.9081 -4.0661 0.9342 12 1 5.8702 -4.4214 1.9640 13 6 4.7449 -4.6182 0.0869 14 6 5.3354 -4.7993 -1.3269 15 6 6.8042 -4.3341 -1.2052 16 1 7.4703 -4.9000 -1.8564 17 6 6.8596 -2.8233 -1.4923 18 7 7.1313 -4.5204 0.2294 19 6 8.2900 -5.0044 0.7754 20 1 8.9359 -5.6439 0.1920 21 6 8.6345 -4.6732 2.0786 22 7 7.9048 -3.8100 2.7531 23 14 10.1337 -5.4525 2.8752 24 1 10.2837 -4.9356 4.2593 25 1 9.9638 -6.9273 2.9128 26 1 11.3456 -5.1138 2.0867 27 16 2.4536 -1.3459 -0.0006 28 8 2.1380 -2.0375 -1.2012 29 8 2.2719 -1.9444 1.2753 30 1 -0.3634 -0.0007 1.0277 31 1 -0.3633 0.8904 -0.5132 32 1 -0.3633 -0.8896 -0.5145 33 1 1.8374 1.9995 -0.5260 34 1 2.5344 1.4875 1.0282 35 1 4.4181 1.6193 -0.4641 36 1 3.5252 0.7954 -1.7804 37 1 4.9653 -2.1537 1.3135 38 1 6.7481 -2.1091 1.3269 39 1 3.9182 -3.9082 0.0646 40 1 4.4102 -5.5766 0.4838 41 1 4.7991 -4.1784 -2.0443 42 1 5.2928 -5.8465 -1.6262 43 1 7.8645 -2.4482 -1.2984 44 1 6.5899 -2.6357 -2.5316 45 1 8.1457 -3.5783 3.6636 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029510926.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:17 Heat of formation + Delta-G solvation = -43.375544 kcal Electronic energy + Delta-G solvation = -30829.032581 eV Core-core repulsion = 26782.538710 eV Total energy + Delta-G solvation = -4046.493871 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -40.17898 -38.29184 -37.12798 -37.02904 -35.94237 -33.86266 -33.20849 -32.46065 -30.72471 -29.30055 -28.19705 -26.24301 -25.55537 -23.92983 -23.71179 -22.42815 -20.22442 -19.68997 -19.10584 -18.55724 -17.76894 -17.27432 -16.97590 -15.99673 -15.91318 -15.51044 -15.24942 -14.87892 -14.75514 -14.51931 -13.87826 -13.60062 -13.52908 -13.41290 -13.14012 -13.06108 -12.89723 -12.88265 -12.22685 -12.11021 -11.99118 -11.82924 -11.79669 -11.74006 -11.55028 -11.26440 -11.10824 -10.92424 -10.82141 -10.66757 -10.40995 -10.12658 -9.92771 -9.76814 -9.65079 -9.60510 -9.26663 -8.77659 -8.23761 -6.84187 -5.94276 -3.32877 -0.03255 2.32895 2.82036 3.14809 3.32663 3.38172 3.38597 3.50193 3.66432 4.22586 4.27878 4.36939 4.58321 4.70265 4.91795 5.00411 5.12686 5.26283 5.27965 5.30656 5.40446 5.48896 5.61280 5.62770 5.67550 5.72342 5.76527 5.82011 5.87732 6.05069 6.23032 6.27872 6.33216 6.48961 6.50948 6.59225 6.69149 6.80699 6.84377 7.15858 7.34790 7.61212 7.83610 8.07537 8.36381 8.97808 9.59446 10.39893 11.20764 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.019526 B = 0.003977 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.675515 B = 7039.391217 C = 7261.303305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -1.000 6.000 3 C 0.080 3.920 4 C -0.109 4.109 5 C -0.597 4.597 6 H 0.167 0.833 7 C 0.532 3.468 8 O -0.536 6.536 9 N -0.587 5.587 10 C 0.091 3.909 11 C 0.173 3.827 12 H 0.112 0.888 13 C -0.137 4.137 14 C -0.128 4.128 15 C 0.132 3.868 16 H 0.083 0.917 17 C 0.105 3.895 18 N -0.581 5.581 19 C -0.231 4.231 20 H 0.074 0.926 21 C 0.004 3.996 22 N -0.913 5.913 23 Si 0.914 3.086 24 H -0.290 1.290 25 H -0.284 1.284 26 H -0.284 1.284 27 S 2.583 3.417 28 O -0.935 6.935 29 O -0.939 6.939 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.052 0.948 38 H 0.102 0.898 39 H 0.035 0.965 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.079 0.921 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.302 10.561 -4.014 15.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.844 5.844 3 C -0.046 4.046 4 C -0.148 4.148 5 C -0.708 4.708 6 H 0.185 0.815 7 C 0.316 3.684 8 O -0.414 6.414 9 N -0.319 5.319 10 C -0.033 4.033 11 C 0.065 3.935 12 H 0.130 0.870 13 C -0.176 4.176 14 C -0.167 4.167 15 C 0.023 3.977 16 H 0.101 0.899 17 C -0.018 4.018 18 N -0.302 5.302 19 C -0.359 4.359 20 H 0.092 0.908 21 C -0.194 4.194 22 N -0.557 5.557 23 Si 0.744 3.256 24 H -0.216 1.216 25 H -0.210 1.210 26 H -0.210 1.210 27 S 2.675 3.325 28 O -0.924 6.924 29 O -0.928 6.928 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.133 0.867 36 H 0.127 0.873 37 H 0.071 0.929 38 H 0.120 0.880 39 H 0.054 0.946 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.098 0.902 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.520 9.677 -4.322 15.654 hybrid contribution 1.127 0.479 0.739 1.430 sum -10.393 10.156 -3.583 14.967 Atomic orbital electron populations 1.21250 0.75858 1.03145 1.01663 1.57205 1.13830 1.21517 1.91826 1.22140 0.89855 0.90617 1.01977 1.22683 0.96170 0.93187 1.02790 1.30975 1.19869 1.10413 1.09571 0.81544 1.18790 0.81630 0.80438 0.87567 1.90660 1.69556 1.65984 1.15232 1.48763 1.33185 1.38620 1.11314 1.22891 1.01885 1.00318 0.78164 1.21574 0.84532 0.89418 0.97962 0.86980 1.22585 0.97867 1.00325 0.96821 1.22532 0.96815 1.00497 0.96903 1.22033 0.94494 0.91979 0.89157 0.89940 1.22845 0.91001 0.95054 0.92867 1.45078 1.12064 1.74205 0.98831 1.18923 0.96961 1.22910 0.97120 0.90783 1.24998 0.98439 0.97796 0.98170 1.69811 1.40018 1.34651 1.11269 0.86193 0.82327 0.78794 0.78332 1.21558 1.21022 1.21000 1.06379 0.76908 0.73701 0.75482 1.93631 1.80893 1.70437 1.47463 1.93643 1.83496 1.73822 1.41889 0.92469 0.90767 0.91162 0.88589 0.90479 0.86717 0.87299 0.92935 0.88038 0.94650 0.91912 0.92129 0.92147 0.90926 0.90236 0.93286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.12 11.38 59.84 0.68 1.80 16 2 N -1.00 -11.67 3.72 -120.68 -0.45 -12.12 16 3 C 0.08 0.69 6.82 -3.15 -0.02 0.66 16 4 C -0.11 -1.13 6.14 -24.76 -0.15 -1.29 16 5 C -0.60 -8.58 2.65 -26.50 -0.07 -8.65 16 6 H 0.17 2.08 6.66 -51.93 -0.35 1.73 16 7 C 0.53 9.72 6.70 -10.99 -0.07 9.65 16 8 O -0.54 -10.78 15.40 5.56 0.09 -10.69 16 9 N -0.59 -11.39 2.28 -169.81 -0.39 -11.78 16 10 C 0.09 1.86 5.39 -3.22 -0.02 1.84 16 11 C 0.17 3.89 3.06 -65.88 -0.20 3.69 16 12 H 0.11 2.80 6.89 -51.93 -0.36 2.44 16 13 C -0.14 -2.80 6.16 -25.47 -0.16 -2.96 16 14 C -0.13 -2.48 6.19 -25.25 -0.16 -2.64 16 15 C 0.13 2.65 4.27 -65.65 -0.28 2.37 16 16 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 17 C 0.11 2.04 6.07 -2.06 -0.01 2.03 16 18 N -0.58 -13.67 2.78 -152.84 -0.42 -14.10 16 19 C -0.23 -5.92 10.34 -15.06 -0.16 -6.07 16 20 H 0.07 1.86 7.83 -52.48 -0.41 1.44 16 21 C 0.00 0.11 5.43 -17.43 -0.09 0.01 16 22 N -0.91 -24.06 10.19 55.49 0.57 -23.49 16 23 Si 0.91 20.69 29.56 -169.99 -5.02 15.66 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 S 2.58 41.17 5.55 -107.50 -0.60 40.58 16 28 O -0.94 -17.87 17.75 -57.43 -1.02 -18.89 16 29 O -0.94 -17.04 18.06 -57.43 -1.04 -18.08 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.11 1.26 7.28 -51.93 -0.38 0.88 16 37 H 0.05 0.97 5.85 -51.93 -0.30 0.66 16 38 H 0.10 2.30 7.26 -51.93 -0.38 1.92 16 39 H 0.03 0.71 7.61 -51.93 -0.40 0.31 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.06 1.17 7.86 -51.93 -0.41 0.76 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 44 H 0.08 1.46 7.14 -51.93 -0.37 1.09 16 45 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 LS Contribution 361.30 15.07 5.44 5.44 Total: -1.00 -32.84 361.30 -10.26 -43.11 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -6.71 Total: 3.90 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -0.71 Total: 0.45 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: -0.70 Total: -61.49 kcal Atomic # 8 Polarization: -45.69 SS G_CDS: -1.97 Total: -47.66 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 41.17 SS G_CDS: -0.60 Total: 40.58 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.84 -10.26 -43.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029510926.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.268 kcal (2) G-P(sol) polarization free energy of solvation -32.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds