Wall clock time and date at job start Wed Apr 1 2020 02:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.47064 * 126.30037 * 2 1 4 4 C 1.54068 * 110.11018 * 150.93776 * 3 2 1 5 5 C 1.55604 * 104.29484 * 45.19955 * 4 3 2 6 6 H 1.08999 * 111.16875 * 79.99261 * 5 4 3 7 7 C 1.50698 * 111.16722 * 204.21964 * 5 4 3 8 8 O 1.21285 * 120.00263 * 32.38440 * 7 5 4 9 9 N 1.34778 * 120.00322 * 212.38634 * 7 5 4 10 10 C 1.47617 * 120.90526 * 184.14394 * 9 7 5 11 11 C 1.53888 * 107.50852 * 132.48708 * 10 9 7 12 12 H 1.08991 * 112.09748 * 182.66113 * 11 10 9 13 13 C 1.54548 * 108.36660 * 307.00831 * 11 10 9 14 14 C 1.54278 * 104.85264 * 89.29291 * 13 11 10 15 15 C 1.54964 * 104.80544 * 359.81119 * 14 13 11 16 16 H 1.09009 * 112.25260 * 146.60433 * 15 14 13 17 17 C 1.47161 * 120.70500 * 4.81735 * 9 7 5 18 18 N 1.48304 * 104.15303 * 24.99182 * 15 14 13 19 19 C 1.36940 * 128.07730 * 139.03751 * 18 15 14 20 20 H 1.08004 * 120.00028 * 194.32750 * 19 18 15 21 21 C 1.38815 * 119.99755 * 14.33133 * 19 18 15 22 22 N 1.31611 * 120.00062 * 9.27378 * 21 19 18 23 23 Si 1.86802 * 119.99584 * 189.27869 * 21 19 18 24 24 H 1.48503 * 109.46953 * 179.97438 * 23 21 19 25 25 H 1.48502 * 109.47227 * 299.99334 * 23 21 19 26 26 H 1.48498 * 109.47415 * 60.00143 * 23 21 19 27 27 S 1.67001 * 126.30387 * 179.97438 * 2 1 3 28 28 O 1.42103 * 105.13470 * 68.63570 * 27 2 1 29 29 O 1.42105 * 105.13104 * 298.96376 * 27 2 1 30 30 H 1.08997 * 109.46981 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.47140 * 120.02439 * 1 2 3 32 32 H 1.09000 * 109.46842 * 240.02782 * 1 2 3 33 33 H 1.08995 * 109.35933 * 30.75522 * 3 2 1 34 34 H 1.09003 * 109.30332 * 271.07797 * 3 2 1 35 35 H 1.09005 * 110.46324 * 286.49617 * 4 3 2 36 36 H 1.08996 * 110.58064 * 163.95528 * 4 3 2 37 37 H 1.09001 * 109.38490 * 13.36688 * 10 9 7 38 38 H 1.09002 * 110.63173 * 252.31373 * 10 9 7 39 39 H 1.08999 * 110.36352 * 208.14051 * 13 11 10 40 40 H 1.08999 * 110.36075 * 330.33998 * 13 11 10 41 41 H 1.08997 * 110.36578 * 118.84351 * 14 13 11 42 42 H 1.09004 * 110.36295 * 241.05311 * 14 13 11 43 43 H 1.09006 * 109.74684 * 107.61977 * 17 9 7 44 44 H 1.08997 * 109.75671 * 346.88231 * 17 9 7 45 45 H 0.97001 * 119.99933 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3356 1.1852 0.0000 4 6 3.6684 0.8635 0.7028 5 6 4.0863 -0.5176 0.1203 6 1 4.5454 -0.4077 -0.8622 7 6 5.0015 -1.2524 1.0655 8 8 4.8769 -1.1102 2.2635 9 7 5.9584 -2.0677 0.5796 10 6 6.8060 -2.8666 1.4865 11 6 6.8366 -4.3062 0.9433 12 1 7.4082 -4.9751 1.5866 13 6 5.3799 -4.7851 0.7508 14 6 5.0121 -4.3648 -0.6873 15 6 6.2824 -3.6640 -1.2321 16 1 6.4177 -3.8276 -2.3013 17 6 6.1928 -2.1712 -0.8695 18 7 7.3881 -4.2443 -0.4321 19 6 8.6303 -4.6281 -0.8618 20 1 9.2539 -5.2437 -0.2304 21 6 9.0882 -4.2260 -2.1091 22 7 8.4138 -3.3322 -2.8008 23 14 10.6614 -4.9535 -2.8056 24 1 10.9305 -4.3636 -4.1416 25 1 11.7932 -4.6505 -1.8932 26 1 10.5109 -6.4251 -2.9361 27 16 2.4538 -1.3458 0.0006 28 8 2.2707 -1.9413 -1.2766 29 8 2.1380 -2.0375 1.2011 30 1 -0.3633 1.0276 -0.0005 31 1 -0.3633 -0.5142 -0.8897 32 1 -0.3633 -0.5134 0.8902 33 1 1.8373 1.9996 0.5259 34 1 2.5334 1.4871 -1.0286 35 1 3.5237 0.7944 1.7810 36 1 4.4179 1.6190 0.4672 37 1 6.3728 -2.8595 2.4866 38 1 7.8184 -2.4641 1.5201 39 1 5.3196 -5.8682 0.8566 40 1 4.7221 -4.2973 1.4702 41 1 4.7711 -5.2412 -1.2888 42 1 4.1720 -3.6703 -0.6764 43 1 7.1272 -1.6727 -1.1280 44 1 5.3666 -1.7097 -1.4103 45 1 8.7339 -3.0509 -3.6722 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029510927.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:21 Heat of formation + Delta-G solvation = -40.379337 kcal Electronic energy + Delta-G solvation = -30762.553973 eV Core-core repulsion = 26716.190028 eV Total energy + Delta-G solvation = -4046.363946 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -40.26277 -38.29989 -37.15768 -37.02789 -35.93991 -33.92664 -33.24447 -32.45709 -30.72857 -29.31579 -28.21301 -26.25226 -25.57474 -23.94339 -23.75299 -22.45602 -20.25396 -19.73251 -19.08963 -18.56571 -17.84763 -17.23773 -16.98137 -16.02975 -15.90662 -15.56220 -15.26372 -14.90413 -14.75110 -14.48124 -13.86501 -13.67114 -13.59027 -13.44528 -13.15662 -13.07299 -12.94458 -12.87130 -12.19840 -12.10874 -11.99964 -11.87985 -11.81341 -11.76539 -11.54380 -11.27400 -11.11148 -10.93055 -10.82268 -10.64832 -10.41613 -10.13946 -9.89918 -9.70766 -9.64194 -9.61971 -9.25624 -8.87526 -8.24413 -6.94261 -5.91224 -3.25950 -0.03449 2.32771 2.78293 3.14778 3.33241 3.38893 3.39417 3.50142 3.67150 4.22337 4.28706 4.37376 4.56059 4.69421 4.87242 4.96503 5.12128 5.26307 5.27549 5.31668 5.39416 5.48566 5.60701 5.61949 5.65231 5.69974 5.75315 5.82766 5.86262 6.01306 6.20829 6.27778 6.31971 6.48480 6.49157 6.55150 6.66014 6.80591 6.83245 7.12847 7.38490 7.58247 7.81010 8.05810 8.35179 8.98803 9.60970 10.36702 11.22238 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.020555 B = 0.003848 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.885175 B = 7274.667940 C = 7423.949406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -1.001 6.001 3 C 0.081 3.919 4 C -0.109 4.109 5 C -0.601 4.601 6 H 0.168 0.832 7 C 0.531 3.469 8 O -0.534 6.534 9 N -0.584 5.584 10 C 0.102 3.898 11 C 0.133 3.867 12 H 0.083 0.917 13 C -0.131 4.131 14 C -0.138 4.138 15 C 0.168 3.832 16 H 0.127 0.873 17 C 0.091 3.909 18 N -0.583 5.583 19 C -0.225 4.225 20 H 0.078 0.922 21 C -0.003 4.003 22 N -0.918 5.918 23 Si 0.914 3.086 24 H -0.290 1.290 25 H -0.285 1.285 26 H -0.285 1.285 27 S 2.586 3.414 28 O -0.940 6.940 29 O -0.934 6.934 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.037 0.963 43 H 0.093 0.907 44 H 0.059 0.941 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.402 9.779 3.724 16.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.844 5.844 3 C -0.045 4.045 4 C -0.149 4.149 5 C -0.712 4.712 6 H 0.186 0.814 7 C 0.315 3.685 8 O -0.412 6.412 9 N -0.315 5.315 10 C -0.021 4.021 11 C 0.024 3.976 12 H 0.101 0.899 13 C -0.170 4.170 14 C -0.177 4.177 15 C 0.060 3.940 16 H 0.145 0.855 17 C -0.032 4.032 18 N -0.304 5.304 19 C -0.353 4.353 20 H 0.096 0.904 21 C -0.200 4.200 22 N -0.564 5.564 23 Si 0.745 3.255 24 H -0.216 1.216 25 H -0.211 1.211 26 H -0.211 1.211 27 S 2.679 3.321 28 O -0.929 6.929 29 O -0.923 6.923 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.126 0.874 36 H 0.133 0.867 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.055 0.945 43 H 0.111 0.889 44 H 0.078 0.922 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.627 8.862 4.067 15.954 hybrid contribution 1.226 0.535 -0.596 1.465 sum -11.401 9.397 3.471 15.177 Atomic orbital electron populations 1.21280 0.75871 1.03430 1.01600 1.57196 1.13820 1.21489 1.91903 1.22139 0.89839 0.90614 1.01940 1.22675 0.96269 0.93189 1.02739 1.31042 1.19862 1.10543 1.09751 0.81416 1.18808 0.81853 0.80141 0.87700 1.90685 1.71497 1.64252 1.14787 1.48344 1.32695 1.41147 1.09327 1.22588 0.93960 0.92981 0.92607 1.22010 0.93322 0.92891 0.89338 0.89916 1.22553 0.97183 1.00345 0.96893 1.22749 0.98253 1.00111 0.96627 1.22005 0.84702 0.87930 0.99400 0.85525 1.22873 1.01371 1.01934 0.77024 1.45185 1.11284 1.72739 1.01161 1.18999 0.90666 1.24885 1.00782 0.90407 1.24810 0.98702 0.98120 0.98323 1.69782 1.40253 1.32378 1.13969 0.86168 0.82568 0.78655 0.78142 1.21583 1.21122 1.21128 1.06248 0.76827 0.73626 0.75409 1.93637 1.83513 1.73949 1.41847 1.93630 1.80827 1.70443 1.47431 0.90129 0.92006 0.91987 0.88607 0.90452 0.87370 0.86712 0.90303 0.91083 0.92054 0.92404 0.91822 0.94456 0.88891 0.92237 0.93352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.07 11.40 59.85 0.68 1.75 16 2 N -1.00 -11.43 3.72 -120.71 -0.45 -11.88 16 3 C 0.08 0.67 6.81 -3.18 -0.02 0.65 16 4 C -0.11 -1.11 6.17 -24.79 -0.15 -1.27 16 5 C -0.60 -8.47 3.08 -26.50 -0.08 -8.55 16 6 H 0.17 2.05 5.88 -51.93 -0.31 1.74 16 7 C 0.53 9.58 6.63 -10.99 -0.07 9.50 16 8 O -0.53 -10.73 15.53 5.55 0.09 -10.64 16 9 N -0.58 -11.11 2.24 -171.16 -0.38 -11.50 16 10 C 0.10 1.97 5.97 -2.97 -0.02 1.95 16 11 C 0.13 2.66 4.27 -65.66 -0.28 2.38 16 12 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 13 C -0.13 -2.50 6.18 -25.25 -0.16 -2.66 16 14 C -0.14 -2.78 6.21 -25.03 -0.16 -2.94 16 15 C 0.17 3.70 3.14 -65.44 -0.21 3.49 16 16 H 0.13 3.13 6.31 -51.92 -0.33 2.80 16 17 C 0.09 1.81 5.65 -3.22 -0.02 1.79 16 18 N -0.58 -13.62 2.80 -152.35 -0.43 -14.05 16 19 C -0.23 -5.75 10.37 -15.06 -0.16 -5.91 16 20 H 0.08 1.94 7.85 -52.48 -0.41 1.53 16 21 C 0.00 -0.07 5.42 -17.43 -0.09 -0.16 16 22 N -0.92 -24.09 10.45 55.49 0.58 -23.51 16 23 Si 0.91 20.74 29.56 -169.99 -5.03 15.71 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 S 2.59 40.45 5.69 -107.50 -0.61 39.84 16 28 O -0.94 -16.68 17.80 -57.41 -1.02 -17.70 16 29 O -0.93 -17.70 17.75 -57.41 -1.02 -18.72 16 30 H 0.08 0.45 8.11 -51.93 -0.42 0.03 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.11 1.23 7.32 -51.93 -0.38 0.85 16 36 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.08 1.46 7.15 -51.93 -0.37 1.08 16 38 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.06 1.10 7.86 -51.93 -0.41 0.69 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.04 0.72 7.37 -51.93 -0.38 0.34 16 43 H 0.09 2.04 7.89 -51.93 -0.41 1.63 16 44 H 0.06 1.02 5.48 -51.93 -0.28 0.74 16 45 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 LS Contribution 360.98 15.07 5.44 5.44 Total: -1.00 -32.96 360.98 -10.20 -43.16 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -6.64 Total: 3.82 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -0.73 Total: 0.04 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: -0.68 Total: -60.94 kcal Atomic # 8 Polarization: -45.11 SS G_CDS: -1.95 Total: -47.06 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Atomic # 16 Polarization: 40.45 SS G_CDS: -0.61 Total: 39.84 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.96 -10.20 -43.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029510927.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.781 kcal (2) G-P(sol) polarization free energy of solvation -32.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds