Wall clock time and date at job start Wed Apr 1 2020 01:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46745 * 2 1 4 4 N 1.46499 * 109.46509 * 240.00292 * 2 1 3 5 5 C 1.34774 * 120.00003 * 85.00631 * 4 2 1 6 6 O 1.21286 * 119.99916 * 359.97438 * 5 4 2 7 7 C 1.50698 * 120.00048 * 179.97438 * 5 4 2 8 8 C 1.50700 * 109.47166 * 179.97438 * 7 5 4 9 9 N 1.34774 * 120.00203 * 180.02562 * 8 7 5 10 10 O 1.21286 * 119.99989 * 359.97438 * 8 7 5 11 11 C 1.52997 * 109.47010 * 120.00489 * 2 1 3 12 12 H 1.09000 * 110.89012 * 57.57120 * 11 2 1 13 13 C 1.55156 * 111.03694 * 293.66544 * 11 2 1 14 14 C 1.54316 * 102.86567 * 206.21755 * 13 11 2 15 15 N 1.47029 * 107.27175 * 22.52711 * 14 13 11 16 16 C 1.34775 * 125.64627 * 180.97172 * 15 14 13 17 17 O 1.21284 * 120.00295 * 179.69512 * 16 15 14 18 18 C 1.50708 * 119.99957 * 359.68523 * 16 15 14 19 19 S 1.80998 * 109.47052 * 180.02562 * 18 16 15 20 20 C 1.76199 * 100.00013 * 180.02562 * 19 18 16 21 21 H 1.07991 * 119.99794 * 0.02562 * 20 19 18 22 22 C 1.38798 * 119.99771 * 180.02562 * 20 19 18 23 23 N 1.31633 * 120.00311 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99653 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47055 * 180.02562 * 24 22 20 26 26 H 1.48508 * 109.47016 * 299.99635 * 24 22 20 27 27 H 1.48495 * 109.47483 * 59.99992 * 24 22 20 28 28 C 1.47423 * 108.70358 * 0.70300 * 15 14 13 29 29 H 1.09005 * 109.47306 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46773 * 299.99388 * 1 2 3 31 31 H 1.08991 * 109.47201 * 59.99619 * 1 2 3 32 32 H 0.97001 * 119.99814 * 264.99239 * 4 2 1 33 33 H 1.08998 * 109.47249 * 299.99292 * 7 5 4 34 34 H 1.08994 * 109.47614 * 59.99520 * 7 5 4 35 35 H 0.97003 * 120.00216 * 359.97438 * 9 8 7 36 36 H 0.97001 * 120.00620 * 179.97438 * 9 8 7 37 37 H 1.08999 * 110.72008 * 324.77431 * 13 11 2 38 38 H 1.09001 * 110.72040 * 87.87099 * 13 11 2 39 39 H 1.08994 * 109.98749 * 263.05236 * 14 13 11 40 40 H 1.08997 * 109.77669 * 141.88575 * 14 13 11 41 41 H 1.09005 * 109.46512 * 60.00633 * 18 16 15 42 42 H 1.08991 * 109.47135 * 300.00153 * 18 16 15 43 43 H 0.97001 * 119.99662 * 359.97438 * 23 22 20 44 44 H 1.09000 * 110.36403 * 94.94143 * 28 15 14 45 45 H 1.09002 * 110.36383 * 217.15199 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 2.1470 -0.0181 -2.3571 6 8 1.8583 1.1586 -2.4116 7 6 2.6497 -0.7284 -3.5875 8 6 2.6998 0.2399 -4.7412 9 7 3.1210 -0.1758 -5.9521 10 8 2.3602 1.3931 -4.5803 11 6 2.0400 -0.7213 1.2492 12 1 1.6547 -1.7400 1.2943 13 6 1.6776 0.0678 2.5350 14 6 2.7745 -0.3707 3.5279 15 7 3.9166 -0.8476 2.7341 16 6 5.0703 -1.3350 3.2319 17 8 5.9464 -1.7063 2.4799 18 6 5.2718 -1.4185 4.7231 19 16 6.9078 -2.1092 5.0731 20 6 6.8757 -2.0945 6.8347 21 1 6.0043 -1.7266 7.3558 22 6 7.9704 -2.5558 7.5526 23 7 9.0327 -3.0037 6.9174 24 14 7.9360 -2.5408 9.4202 25 1 9.2170 -3.0800 9.9432 26 1 7.7530 -1.1476 9.9008 27 1 6.8110 -3.3822 9.9014 28 6 3.5881 -0.7104 1.3035 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 2.2490 -1.6317 -1.1527 33 1 3.6490 -1.1202 -3.3981 34 1 1.9775 -1.5506 -3.8326 35 1 3.3922 -1.0982 -6.0810 36 1 3.1529 0.4473 -6.6948 37 1 1.7231 1.1417 2.3541 38 1 0.6909 -0.2192 2.8983 39 1 2.4026 -1.1750 4.1625 40 1 3.0777 0.4779 4.1409 41 1 4.5055 -2.0603 5.1579 42 1 5.1988 -0.4209 5.1560 43 1 9.0504 -3.0118 5.9476 44 1 3.9747 0.2315 0.9142 45 1 3.9951 -1.5491 0.7387 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050098005.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:50:06 Heat of formation + Delta-G solvation = -118.384715 kcal Electronic energy + Delta-G solvation = -27075.773480 eV Core-core repulsion = 23026.026968 eV Total energy + Delta-G solvation = -4049.746513 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.75421 -40.00408 -38.93315 -37.62451 -35.44497 -34.05286 -32.62695 -32.54401 -31.00567 -29.97981 -29.43542 -28.22758 -24.90117 -23.88167 -23.27814 -21.71531 -20.85685 -20.32038 -19.37331 -18.28186 -17.96435 -17.66013 -16.95957 -16.81408 -16.27136 -16.11292 -15.72387 -15.39974 -14.72806 -14.42732 -14.25743 -14.09139 -14.04401 -13.84136 -13.73238 -13.62048 -13.16980 -12.88550 -12.71801 -12.43438 -12.39432 -12.28115 -11.98196 -11.86288 -11.85121 -11.47453 -11.24402 -11.00181 -10.93208 -10.54768 -10.18754 -10.05409 -9.77026 -9.60387 -9.56110 -9.39186 -9.03192 -8.61692 -8.24630 -6.69688 -6.63977 -4.02105 2.22759 2.42989 2.53351 2.76164 2.92449 3.26799 3.31478 3.36588 3.43605 3.56703 4.03105 4.18434 4.19714 4.24856 4.35784 4.52721 4.68292 4.79486 4.83438 4.85864 4.93164 4.99295 5.10921 5.17288 5.20663 5.34469 5.35908 5.44149 5.53001 5.57422 5.62727 5.68177 5.79769 5.81766 5.92810 5.99332 6.15680 6.30104 6.37572 6.87512 7.14474 7.54301 7.85967 7.89931 8.01436 8.41580 8.48212 9.25218 10.79904 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.020952 B = 0.001915 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.074790 B =14620.230290 C =15686.882217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.156 3.844 3 H 0.093 0.907 4 N -0.730 5.730 5 C 0.514 3.486 6 O -0.494 6.494 7 C -0.169 4.169 8 C 0.515 3.485 9 N -0.860 5.860 10 O -0.498 6.498 11 C -0.111 4.111 12 H 0.092 0.908 13 C -0.121 4.121 14 C 0.101 3.899 15 N -0.626 5.626 16 C 0.547 3.453 17 O -0.517 6.517 18 C -0.124 4.124 19 S -0.117 6.117 20 C -0.607 4.607 21 H 0.066 0.934 22 C 0.035 3.965 23 N -0.883 5.883 24 Si 1.084 2.916 25 H -0.278 1.278 26 H -0.285 1.285 27 H -0.285 1.285 28 C 0.116 3.884 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.400 0.600 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.400 0.600 36 H 0.403 0.597 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.278 0.722 44 H 0.066 0.934 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.044 1.934 -20.425 28.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.052 3.948 3 H 0.111 0.889 4 N -0.384 5.384 5 C 0.297 3.703 6 O -0.366 6.366 7 C -0.212 4.212 8 C 0.297 3.703 9 N -0.426 5.426 10 O -0.369 6.369 11 C -0.131 4.131 12 H 0.110 0.890 13 C -0.159 4.159 14 C -0.023 4.023 15 N -0.363 5.363 16 C 0.336 3.664 17 O -0.391 6.391 18 C -0.275 4.275 19 S 0.109 5.891 20 C -0.755 4.755 21 H 0.084 0.916 22 C -0.175 4.175 23 N -0.518 5.518 24 Si 0.910 3.090 25 H -0.203 1.203 26 H -0.211 1.211 27 H -0.211 1.211 28 C -0.008 4.008 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.234 0.766 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.228 0.772 36 H 0.234 0.766 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.230 2.603 -19.903 27.115 hybrid contribution -1.764 -0.009 -0.677 1.890 sum -19.994 2.594 -20.580 28.810 Atomic orbital electron populations 1.22170 0.94734 1.02256 1.02881 1.20876 0.94221 0.97349 0.82402 0.88936 1.46054 1.68643 1.14104 1.09581 1.19923 0.78772 0.87561 0.84023 1.90877 1.46910 1.14945 1.83873 1.21609 1.05841 1.00063 0.93717 1.19985 0.77531 0.88882 0.83874 1.43865 1.70852 1.15893 1.12021 1.90925 1.44942 1.18343 1.82725 1.22694 0.95444 1.00646 0.94319 0.88957 1.22657 0.98702 1.00797 0.93743 1.22023 0.86183 0.99589 0.94474 1.48466 1.15986 1.64989 1.06892 1.20001 0.79941 0.76007 0.90473 1.90706 1.41034 1.47108 1.60295 1.23291 1.05491 1.05213 0.93529 1.84811 1.13316 1.82201 1.08737 1.23689 1.08015 1.53780 0.90028 0.91609 1.26063 0.91269 0.92704 1.07501 1.70803 1.28809 1.40730 1.11411 0.83330 0.76423 0.76676 0.72573 1.20257 1.21122 1.21127 1.22140 0.93398 1.02201 0.83012 0.92354 0.91267 0.91892 0.76617 0.85778 0.85995 0.77222 0.76601 0.89992 0.89485 0.91080 0.91060 0.89035 0.89027 0.91000 0.91550 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 9.33 37.16 0.35 -0.71 16 2 C 0.16 1.15 2.09 -67.93 -0.14 1.01 16 3 H 0.09 0.90 7.55 -51.93 -0.39 0.50 16 4 N -0.73 -4.85 4.77 -53.81 -0.26 -5.11 16 5 C 0.51 4.71 7.79 -10.99 -0.09 4.62 16 6 O -0.49 -7.17 13.84 -18.96 -0.26 -7.43 16 7 C -0.17 -0.87 6.19 -29.04 -0.18 -1.05 16 8 C 0.52 4.31 8.09 -10.99 -0.09 4.22 16 9 N -0.86 -3.42 8.87 31.22 0.28 -3.14 16 10 O -0.50 -7.18 15.02 -18.96 -0.28 -7.47 16 11 C -0.11 -0.81 2.62 -88.47 -0.23 -1.04 16 12 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 13 C -0.12 -0.83 5.59 -24.90 -0.14 -0.97 16 14 C 0.10 1.01 6.48 -3.06 -0.02 0.99 16 15 N -0.63 -8.66 3.33 -170.52 -0.57 -9.23 16 16 C 0.55 10.41 7.87 -10.98 -0.09 10.33 16 17 O -0.52 -11.79 16.12 5.55 0.09 -11.70 16 18 C -0.12 -2.55 5.35 36.01 0.19 -2.35 16 19 S -0.12 -3.16 19.60 -107.50 -2.11 -5.27 16 20 C -0.61 -17.48 9.50 30.94 0.29 -17.19 16 21 H 0.07 1.81 7.80 -52.49 -0.41 1.40 16 22 C 0.04 1.02 5.49 -17.43 -0.10 0.93 16 23 N -0.88 -27.46 13.67 55.49 0.76 -26.70 16 24 Si 1.08 24.83 29.92 -169.99 -5.09 19.75 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 28 C 0.12 1.28 6.09 -2.53 -0.02 1.26 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.39 7.50 -51.93 -0.39 0.00 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.40 1.62 8.60 -40.82 -0.35 1.27 16 33 H 0.12 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.12 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.40 0.20 8.83 -40.82 -0.36 -0.16 16 36 H 0.40 1.48 8.93 -40.82 -0.36 1.12 16 37 H 0.08 0.54 8.02 -51.93 -0.42 0.13 16 38 H 0.09 0.44 8.13 -51.93 -0.42 0.01 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 42 H 0.09 1.77 8.14 -51.92 -0.42 1.34 16 43 H 0.28 8.81 7.12 -40.82 -0.29 8.52 16 44 H 0.07 0.79 8.04 -51.93 -0.42 0.37 16 45 H 0.08 0.89 8.03 -51.93 -0.42 0.47 16 LS Contribution 390.76 15.07 5.89 5.89 Total: -1.00 -42.51 390.76 -8.63 -51.14 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -6.83 Total: -0.76 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -0.25 Total: 0.04 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: 0.21 Total: -44.18 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.46 Total: -26.60 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -5.09 Total: 19.75 kcal Atomic # 16 Polarization: -3.16 SS G_CDS: -2.11 Total: -5.27 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -42.51 -8.63 -51.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050098005.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.245 kcal (2) G-P(sol) polarization free energy of solvation -42.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds