Wall clock time and date at job start Wed Apr 1 2020 01:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 5 5 C 1.34777 * 120.00376 * 275.00479 * 4 2 1 6 6 O 1.21279 * 119.99824 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00179 * 179.97438 * 5 4 2 8 8 C 1.50703 * 109.47404 * 179.97438 * 7 5 4 9 9 N 1.34778 * 119.99837 * 179.97438 * 8 7 5 10 10 O 1.21275 * 119.99717 * 0.02562 * 8 7 5 11 11 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 12 12 H 1.09000 * 110.89009 * 302.43004 * 11 2 1 13 13 C 1.55161 * 111.00538 * 66.35005 * 11 2 1 14 14 C 1.54324 * 102.94659 * 153.57675 * 13 11 2 15 15 N 1.47021 * 107.26807 * 337.81026 * 14 13 11 16 16 C 1.34774 * 125.64807 * 178.97427 * 15 14 13 17 17 O 1.21278 * 120.00343 * 179.97438 * 16 15 14 18 18 C 1.50702 * 119.99964 * 359.95775 * 16 15 14 19 19 S 1.81000 * 109.47412 * 179.97438 * 18 16 15 20 20 C 1.76202 * 100.00189 * 180.02562 * 19 18 16 21 21 H 1.07997 * 119.99652 * 359.97438 * 20 19 18 22 22 C 1.38797 * 119.99934 * 179.97438 * 20 19 18 23 23 N 1.31631 * 120.00208 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99825 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47432 * 60.00050 * 24 22 20 26 26 H 1.48500 * 109.46976 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47003 * 299.99960 * 24 22 20 28 28 C 1.47430 * 108.70591 * 358.93965 * 15 14 13 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 0.97006 * 119.99921 * 94.99902 * 4 2 1 33 33 H 1.08995 * 109.47183 * 300.00111 * 7 5 4 34 34 H 1.09009 * 109.47183 * 59.99391 * 7 5 4 35 35 H 0.96996 * 120.00410 * 0.02562 * 9 8 7 36 36 H 0.97006 * 119.99281 * 179.97438 * 9 8 7 37 37 H 1.09004 * 110.72171 * 271.94450 * 13 11 2 38 38 H 1.09001 * 110.71941 * 35.21432 * 13 11 2 39 39 H 1.08996 * 109.88039 * 218.39390 * 14 13 11 40 40 H 1.08999 * 110.01041 * 97.29307 * 14 13 11 41 41 H 1.08995 * 109.47350 * 300.00013 * 18 16 15 42 42 H 1.09000 * 109.47133 * 60.00079 * 18 16 15 43 43 H 0.96993 * 120.00382 * 179.97438 * 23 22 20 44 44 H 1.09002 * 110.36158 * 265.28892 * 28 15 14 45 45 H 1.08995 * 110.46129 * 143.01668 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8589 1.1587 2.4115 7 6 2.6488 -0.7286 3.5878 8 6 2.7001 0.2399 4.7413 9 7 3.1208 -0.1762 5.9522 10 8 2.3620 1.3933 4.5800 11 6 2.0400 -0.7212 -1.2491 12 1 1.6548 -1.7399 -1.2943 13 6 1.6776 0.0687 -2.5345 14 6 2.7767 -0.3640 -3.5277 15 7 3.9165 -0.8465 -2.7343 16 6 5.0708 -1.3323 -3.2324 17 8 5.9472 -1.7031 -2.4807 18 6 5.2722 -1.4150 -4.7236 19 16 6.9090 -2.1035 -5.0741 20 6 6.8772 -2.0867 -6.8358 21 1 6.0055 -1.7191 -7.3566 22 6 7.9725 -2.5460 -7.5540 23 7 9.0348 -2.9945 -6.9192 24 14 7.9390 -2.5276 -9.4216 25 1 7.7554 -1.1337 -9.8997 26 1 9.2202 -3.0661 -9.9450 27 1 6.8148 -3.3688 -9.9049 28 6 3.5881 -0.7103 -1.3035 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 2.2490 -1.6317 1.1527 33 1 1.9759 -1.5505 3.8326 34 1 3.6480 -1.1213 3.3986 35 1 3.3908 -1.0988 6.0813 36 1 3.1542 0.4474 6.6946 37 1 0.6921 -0.2202 -2.8998 38 1 1.7231 1.1426 -2.3528 39 1 3.0824 0.4871 -4.1361 40 1 2.4062 -1.1639 -4.1687 41 1 4.5067 -2.0574 -5.1586 42 1 5.1980 -0.4172 -5.1562 43 1 9.8001 -3.3158 -7.4211 44 1 3.9748 0.2313 -0.9136 45 1 3.9935 -1.5492 -0.7379 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050098006.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:50:08 Heat of formation + Delta-G solvation = -113.087923 kcal Electronic energy + Delta-G solvation = -27040.505812 eV Core-core repulsion = 22990.988986 eV Total energy + Delta-G solvation = -4049.516827 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.71792 -39.93669 -38.88869 -37.54773 -35.39210 -34.03010 -32.57498 -32.43817 -30.94418 -29.89299 -29.38647 -28.13200 -25.50681 -23.85583 -23.22160 -21.67882 -20.81561 -20.28267 -19.29512 -18.00657 -17.73282 -17.58324 -16.90705 -16.61656 -16.24174 -16.07082 -15.64507 -15.21037 -14.81436 -14.57154 -14.31727 -14.12903 -14.03178 -13.84440 -13.70012 -13.56045 -13.12899 -12.81205 -12.62308 -12.55883 -12.36683 -12.19956 -11.89427 -11.77726 -11.42922 -11.21673 -11.05044 -11.04871 -10.95149 -10.77594 -10.52117 -10.03244 -9.83768 -9.74183 -9.45027 -9.35266 -9.06940 -8.53131 -8.25431 -6.51704 -6.22544 -3.93487 2.25381 2.45867 2.56508 2.88647 3.03748 3.22666 3.24928 3.28325 3.29644 3.59607 4.07682 4.19234 4.23520 4.25930 4.41088 4.55530 4.71157 4.82628 4.89558 4.90775 4.98638 5.07203 5.12473 5.15930 5.22847 5.38037 5.45978 5.52371 5.60469 5.63364 5.70976 5.75573 5.83529 5.92292 5.97276 6.12677 6.19310 6.38950 6.39679 6.89815 7.17842 7.58102 7.64307 7.88574 8.04316 8.34003 8.52974 9.22522 10.84846 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.020952 B = 0.001910 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.046160 B =14658.781486 C =15724.744174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.156 3.844 3 H 0.092 0.908 4 N -0.730 5.730 5 C 0.514 3.486 6 O -0.495 6.495 7 C -0.169 4.169 8 C 0.515 3.485 9 N -0.861 5.861 10 O -0.498 6.498 11 C -0.111 4.111 12 H 0.092 0.908 13 C -0.121 4.121 14 C 0.101 3.899 15 N -0.627 5.627 16 C 0.549 3.451 17 O -0.516 6.516 18 C -0.147 4.147 19 S -0.061 6.061 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C 0.116 3.884 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.400 0.600 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.400 0.600 36 H 0.403 0.597 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.065 0.935 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.346 1.618 20.220 28.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.051 3.949 3 H 0.110 0.890 4 N -0.384 5.384 5 C 0.297 3.703 6 O -0.366 6.366 7 C -0.212 4.212 8 C 0.297 3.703 9 N -0.426 5.426 10 O -0.369 6.369 11 C -0.131 4.131 12 H 0.110 0.890 13 C -0.159 4.159 14 C -0.022 4.022 15 N -0.365 5.365 16 C 0.337 3.663 17 O -0.391 6.391 18 C -0.297 4.297 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 C -0.008 4.008 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.234 0.766 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.228 0.772 36 H 0.234 0.766 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.243 2.584 21.009 27.944 hybrid contribution -0.727 -0.440 -1.746 1.942 sum -18.970 2.144 19.263 27.121 Atomic orbital electron populations 1.22170 0.94781 1.02235 1.02850 1.20877 0.94180 0.97361 0.82435 0.88950 1.46055 1.68615 1.14112 1.09576 1.19919 0.78768 0.87561 0.84029 1.90873 1.46937 1.14944 1.83889 1.21612 1.05856 1.00050 0.93720 1.19987 0.77516 0.88892 0.83869 1.43868 1.70909 1.15834 1.12037 1.90921 1.44966 1.18337 1.82710 1.22691 0.95558 1.00600 0.94261 0.88978 1.22660 0.98693 1.00757 0.93799 1.22005 0.86234 0.99529 0.94436 1.48497 1.16132 1.65080 1.06751 1.20031 0.79798 0.75896 0.90553 1.90703 1.40959 1.47044 1.60359 1.23508 1.07520 1.05311 0.93393 1.85385 1.09860 1.81279 1.06912 1.22816 1.04974 1.49523 0.91069 0.90973 1.24991 0.94536 0.94528 0.99512 1.70005 1.04837 1.39321 1.36122 0.86221 0.77592 0.78601 0.83069 1.19925 1.20797 1.19941 1.22122 0.93292 1.02153 0.83186 0.92367 0.91278 0.91929 0.76608 0.86004 0.85764 0.77223 0.76616 0.89552 0.90053 0.91127 0.91136 0.89302 0.89298 0.92117 0.91630 0.90515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 9.33 37.16 0.35 -0.73 16 2 C 0.16 1.17 2.09 -67.94 -0.14 1.03 16 3 H 0.09 0.91 7.54 -51.93 -0.39 0.51 16 4 N -0.73 -4.93 4.77 -53.81 -0.26 -5.19 16 5 C 0.51 4.76 7.79 -10.99 -0.09 4.67 16 6 O -0.49 -7.22 13.84 -18.96 -0.26 -7.49 16 7 C -0.17 -0.89 6.19 -29.03 -0.18 -1.07 16 8 C 0.52 4.34 8.09 -10.98 -0.09 4.26 16 9 N -0.86 -3.48 8.87 31.22 0.28 -3.20 16 10 O -0.50 -7.22 15.02 -18.95 -0.28 -7.50 16 11 C -0.11 -0.82 2.62 -88.47 -0.23 -1.06 16 12 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 13 C -0.12 -0.85 5.59 -24.89 -0.14 -0.99 16 14 C 0.10 1.03 6.49 -3.06 -0.02 1.01 16 15 N -0.63 -8.77 3.33 -170.52 -0.57 -9.34 16 16 C 0.55 10.50 7.87 -10.99 -0.09 10.42 16 17 O -0.52 -11.87 16.12 5.56 0.09 -11.78 16 18 C -0.15 -3.00 5.35 36.01 0.19 -2.81 16 19 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 20 C -0.54 -15.23 9.50 30.94 0.29 -14.93 16 21 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.10 13.22 55.49 0.73 -25.36 16 24 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 C 0.12 1.30 6.08 -2.53 -0.02 1.28 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.39 7.50 -51.93 -0.39 0.00 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.40 1.66 8.60 -40.82 -0.35 1.31 16 33 H 0.12 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.12 0.35 8.14 -51.92 -0.42 -0.08 16 35 H 0.40 0.23 8.83 -40.82 -0.36 -0.14 16 36 H 0.40 1.51 8.93 -40.82 -0.36 1.14 16 37 H 0.09 0.45 8.13 -51.93 -0.42 0.02 16 38 H 0.08 0.55 8.01 -51.93 -0.42 0.14 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 42 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 43 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.07 0.79 8.04 -51.93 -0.42 0.37 16 45 H 0.08 0.90 8.04 -51.93 -0.42 0.48 16 LS Contribution 392.12 15.07 5.91 5.91 Total: -1.00 -41.79 392.12 -8.73 -50.51 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -6.88 Total: -2.08 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -0.25 Total: 3.09 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.19 Total: -43.08 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.46 Total: -26.77 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -41.79 -8.73 -50.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050098006.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.573 kcal (2) G-P(sol) polarization free energy of solvation -41.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds