Wall clock time and date at job start Wed Apr 1 2020 01:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47026 * 2 1 4 4 N 1.46504 * 109.46774 * 119.99967 * 2 1 3 5 5 C 1.34775 * 119.99561 * 274.99589 * 4 2 1 6 6 O 1.21282 * 120.00577 * 0.02562 * 5 4 2 7 7 C 1.50703 * 119.99768 * 179.97438 * 5 4 2 8 8 S 1.81002 * 109.47349 * 180.02562 * 7 5 4 9 9 C 1.76199 * 100.00182 * 180.02562 * 8 7 5 10 10 H 1.07999 * 119.99976 * 0.02562 * 9 8 7 11 11 C 1.38803 * 119.99949 * 179.97438 * 9 8 7 12 12 N 1.31630 * 119.99849 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00065 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46692 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46740 * 119.99825 * 13 11 9 16 16 H 1.48497 * 109.47025 * 240.00183 * 13 11 9 17 17 C 1.53000 * 109.46984 * 239.99505 * 2 1 3 18 18 H 1.08998 * 110.89074 * 302.42852 * 17 2 1 19 19 C 1.55159 * 111.00121 * 178.54798 * 17 2 1 20 20 C 1.54326 * 102.94205 * 206.42566 * 19 17 2 21 21 N 1.47016 * 107.26978 * 22.19335 * 20 19 17 22 22 C 1.34775 * 125.64842 * 181.01294 * 21 20 19 23 23 O 1.21282 * 120.00256 * 180.02562 * 22 21 20 24 24 C 1.50700 * 120.00075 * 0.02629 * 22 21 20 25 25 C 1.50702 * 109.47510 * 179.97438 * 24 22 21 26 26 N 1.34767 * 120.00353 * 179.97438 * 25 24 22 27 27 O 1.21277 * 119.99722 * 0.02562 * 25 24 22 28 28 C 1.47424 * 108.70571 * 1.05991 * 21 20 19 29 29 H 1.08994 * 109.47180 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46967 * 300.00342 * 1 2 3 31 31 H 1.09004 * 109.46952 * 60.00452 * 1 2 3 32 32 H 0.96993 * 120.00065 * 94.99847 * 4 2 1 33 33 H 1.09005 * 109.46867 * 60.00428 * 7 5 4 34 34 H 1.09000 * 109.47235 * 300.00468 * 7 5 4 35 35 H 0.97005 * 119.99878 * 179.97438 * 12 11 9 36 36 H 1.09000 * 110.72197 * 324.78665 * 19 17 2 37 37 H 1.09004 * 110.71841 * 87.88452 * 19 17 2 38 38 H 1.09000 * 109.87863 * 141.61331 * 20 19 17 39 39 H 1.09006 * 109.88067 * 262.77505 * 20 19 17 40 40 H 1.08999 * 109.46888 * 300.00320 * 24 22 21 41 41 H 1.09004 * 109.46984 * 59.99725 * 24 22 21 42 42 H 0.97012 * 119.99942 * 0.02562 * 26 25 24 43 43 H 0.96999 * 120.00751 * 180.02562 * 26 25 24 44 44 H 1.09006 * 110.36917 * 217.03177 * 28 21 20 45 45 H 1.09003 * 110.36998 * 94.70835 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8582 1.1585 2.4117 7 6 2.6487 -0.7287 3.5878 8 16 2.7091 0.4342 4.9735 9 6 3.3123 -0.6309 6.2409 10 1 3.5223 -1.6672 6.0207 11 6 3.5185 -0.1379 7.5219 12 7 3.2630 1.1252 7.7900 13 14 4.1573 -1.2673 8.8657 14 1 4.3634 -2.6293 8.3110 15 1 5.4475 -0.7428 9.3812 16 1 3.1695 -1.3274 9.9728 17 6 2.0400 -0.7214 -1.2492 18 1 1.6547 -1.7400 -1.2943 19 6 3.5906 -0.7104 -1.3036 20 6 3.8842 -0.8152 -2.8150 21 7 2.6860 -0.3456 -3.5259 22 6 2.5345 -0.2994 -4.8643 23 8 1.4978 0.1089 -5.3435 24 6 3.6531 -0.7549 -5.7655 25 6 3.2324 -0.6031 -7.2047 26 7 4.0786 -0.9506 -8.1944 27 8 2.1327 -0.1674 -7.4722 28 6 1.6782 0.0674 -2.5324 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 2.2489 -1.6317 1.1527 33 1 3.6479 -1.1213 3.3987 34 1 1.9758 -1.5505 3.8326 35 1 3.4068 1.4696 8.6854 36 1 3.9841 0.2217 -0.8980 37 1 4.0013 -1.5663 -0.7679 38 1 4.7373 -0.1871 -3.0713 39 1 4.0909 -1.8517 -3.0815 40 1 4.5393 -0.1482 -5.5797 41 1 3.8802 -1.8015 -5.5622 42 1 4.9584 -1.2988 -7.9804 43 1 3.8080 -0.8525 -9.1207 44 1 0.6779 -0.2003 -2.8729 45 1 1.7432 1.1400 -2.3494 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050358031.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:51 Heat of formation + Delta-G solvation = -113.011788 kcal Electronic energy + Delta-G solvation = -26845.886902 eV Core-core repulsion = 22796.373377 eV Total energy + Delta-G solvation = -4049.513525 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.83873 -39.83138 -39.02826 -37.65272 -35.30005 -34.09504 -32.45711 -32.37572 -31.07575 -30.52393 -28.95841 -27.96362 -25.52119 -24.67589 -22.60464 -21.71079 -20.65047 -20.32196 -19.59174 -18.03035 -17.80496 -17.69618 -17.05290 -16.49802 -16.32918 -16.11598 -15.36476 -15.15113 -14.96246 -14.82623 -14.37490 -14.18541 -14.01570 -13.86962 -13.54954 -13.24609 -13.15897 -13.07115 -12.85240 -12.65633 -12.46116 -12.35240 -11.95690 -11.60832 -11.40716 -11.15962 -11.09123 -11.04176 -10.91516 -10.76741 -10.58374 -10.10621 -9.83466 -9.81512 -9.41321 -9.10116 -8.99293 -8.94404 -8.25297 -6.52225 -6.24058 -3.94577 2.18036 2.36589 2.37885 2.99096 3.06936 3.16905 3.19609 3.26181 3.30289 3.63794 3.90093 4.10664 4.18137 4.24393 4.37158 4.50218 4.61240 4.70246 4.76734 4.91221 4.92899 5.11300 5.13032 5.15930 5.20781 5.32147 5.45305 5.51662 5.57363 5.60152 5.68251 5.76347 5.85971 5.90093 6.01306 6.10972 6.21533 6.32635 6.62059 6.82379 7.11973 7.57540 7.68202 7.78691 7.94755 8.33022 8.59301 9.21503 10.83379 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.031517 B = 0.001683 C = 0.001631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.190232 B =16634.966198 C =17167.397193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.156 3.844 3 H 0.091 0.909 4 N -0.733 5.733 5 C 0.534 3.466 6 O -0.516 6.516 7 C -0.153 4.153 8 S -0.060 6.060 9 C -0.536 4.536 10 H 0.073 0.927 11 C 0.073 3.927 12 N -0.867 5.867 13 Si 0.918 3.082 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.280 1.280 17 C -0.109 4.109 18 H 0.091 0.909 19 C -0.127 4.127 20 C 0.098 3.902 21 N -0.623 5.623 22 C 0.527 3.473 23 O -0.494 6.494 24 C -0.162 4.162 25 C 0.514 3.486 26 N -0.860 5.860 27 O -0.497 6.497 28 C 0.117 3.883 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.397 0.603 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.268 0.732 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.400 0.600 43 H 0.403 0.597 44 H 0.083 0.917 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.441 -9.422 -28.126 30.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.050 3.950 3 H 0.109 0.891 4 N -0.388 5.388 5 C 0.320 3.680 6 O -0.390 6.390 7 C -0.304 4.304 8 S 0.166 5.834 9 C -0.684 4.684 10 H 0.091 0.909 11 C -0.136 4.136 12 N -0.502 5.502 13 Si 0.745 3.255 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.206 1.206 17 C -0.128 4.128 18 H 0.109 0.891 19 C -0.165 4.165 20 C -0.025 4.025 21 N -0.360 5.360 22 C 0.313 3.687 23 O -0.366 6.366 24 C -0.205 4.205 25 C 0.297 3.703 26 N -0.426 5.426 27 O -0.368 6.368 28 C -0.005 4.005 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.230 0.770 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.228 0.772 43 H 0.234 0.766 44 H 0.101 0.899 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.583 -6.749 -28.245 29.261 hybrid contribution 1.463 -2.815 0.627 3.234 sum 5.046 -9.564 -27.619 29.660 Atomic orbital electron populations 1.22233 0.95108 1.02239 1.02950 1.20756 0.94148 0.97305 0.82748 0.89063 1.46030 1.69482 1.13835 1.09407 1.20295 0.76808 0.87218 0.83706 1.90708 1.48174 1.15792 1.84334 1.23533 1.03610 1.04866 0.98405 1.85417 1.86328 1.12847 0.98789 1.22909 1.50885 0.98197 0.96402 0.90891 1.24993 0.95100 0.95524 0.97962 1.70028 1.45546 1.13219 1.21446 0.86121 0.78529 0.80117 0.80748 1.19636 1.20573 1.20558 1.22662 0.95870 1.00465 0.93842 0.89061 1.22701 0.95405 1.04219 0.94142 1.22103 0.88024 0.99584 0.92746 1.48496 1.17304 1.65464 1.04730 1.19575 0.88783 0.79474 0.80840 1.90889 1.28310 1.44119 1.73304 1.21565 1.00175 1.05631 0.93149 1.19992 0.85103 0.78055 0.87188 1.43856 1.19413 1.69796 1.09553 1.90928 1.20256 1.41885 1.83752 1.22184 0.92922 0.99070 0.86363 0.92455 0.91408 0.91703 0.76956 0.89288 0.89280 0.92223 0.89794 0.89495 0.91131 0.91234 0.86009 0.86056 0.77244 0.76560 0.89877 0.90819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 9.33 37.16 0.35 -1.39 16 2 C 0.16 1.59 2.09 -67.93 -0.14 1.45 16 3 H 0.09 1.12 7.54 -51.93 -0.39 0.73 16 4 N -0.73 -8.49 4.77 -53.80 -0.26 -8.75 16 5 C 0.53 9.21 7.81 -10.98 -0.09 9.12 16 6 O -0.52 -11.11 15.53 5.56 0.09 -11.03 16 7 C -0.15 -2.93 6.16 36.01 0.22 -2.71 16 8 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 9 C -0.54 -14.97 9.50 30.94 0.29 -14.67 16 10 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 11 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 12 N -0.87 -25.83 13.22 55.49 0.73 -25.10 16 13 Si 0.92 21.06 29.55 -169.99 -5.02 16.03 16 14 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 C -0.11 -0.78 2.62 -88.47 -0.23 -1.01 16 18 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 19 C -0.13 -0.75 6.13 -24.89 -0.15 -0.91 16 20 C 0.10 0.47 6.49 -3.07 -0.02 0.45 16 21 N -0.62 -4.97 3.33 -170.52 -0.57 -5.54 16 22 C 0.53 5.28 7.84 -10.99 -0.09 5.19 16 23 O -0.49 -7.63 14.44 -18.96 -0.27 -7.90 16 24 C -0.16 -0.85 5.38 -29.03 -0.16 -1.00 16 25 C 0.51 4.14 8.09 -10.99 -0.09 4.05 16 26 N -0.86 -2.89 8.87 31.22 0.28 -2.62 16 27 O -0.50 -7.09 15.02 -18.96 -0.28 -7.38 16 28 C 0.12 1.01 5.56 -2.53 -0.01 1.00 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.59 7.45 -51.93 -0.39 0.21 16 32 H 0.40 3.43 8.60 -40.82 -0.35 3.08 16 33 H 0.09 1.54 8.14 -51.91 -0.42 1.12 16 34 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 35 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.08 0.61 8.04 -51.93 -0.42 0.20 16 37 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 39 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.12 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.12 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.40 -0.10 8.83 -40.81 -0.36 -0.46 16 43 H 0.40 1.23 8.93 -40.82 -0.36 0.86 16 44 H 0.08 0.80 7.96 -51.93 -0.41 0.38 16 45 H 0.07 0.68 8.00 -51.93 -0.42 0.26 16 LS Contribution 392.01 15.07 5.91 5.91 Total: -1.00 -41.24 392.01 -8.70 -49.94 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -6.87 Total: -1.30 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -0.21 Total: 1.53 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: 0.19 Total: -42.00 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.47 Total: -26.30 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -41.24 -8.70 -49.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050358031.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.073 kcal (2) G-P(sol) polarization free energy of solvation -41.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds