Wall clock time and date at job start Wed Apr 1 2020 01:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47428 * 2 1 4 4 N 1.46511 * 109.47075 * 240.00260 * 2 1 3 5 5 C 1.34776 * 120.00110 * 84.99966 * 4 2 1 6 6 O 1.21280 * 119.99617 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00211 * 180.02562 * 5 4 2 8 8 S 1.81001 * 109.47207 * 179.97438 * 7 5 4 9 9 C 1.76201 * 99.99599 * 179.97438 * 8 7 5 10 10 H 1.08000 * 120.00517 * 359.97438 * 9 8 7 11 11 C 1.38799 * 119.99435 * 180.02562 * 9 8 7 12 12 N 1.31635 * 120.00388 * 359.97438 * 11 9 8 13 13 Si 1.86809 * 119.99943 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46823 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47001 * 119.99279 * 13 11 9 16 16 H 1.48495 * 109.46920 * 239.99861 * 13 11 9 17 17 C 1.52994 * 109.47347 * 120.00501 * 2 1 3 18 18 H 1.08999 * 110.89221 * 59.91423 * 17 2 1 19 19 C 1.55162 * 111.00272 * 296.03566 * 17 2 1 20 20 C 1.54325 * 102.94125 * 206.38943 * 19 17 2 21 21 N 1.47018 * 107.27627 * 22.19103 * 20 19 17 22 22 C 1.34771 * 125.64959 * 180.79562 * 21 20 19 23 23 O 1.21277 * 120.00028 * 180.02562 * 22 21 20 24 24 C 1.50703 * 120.00175 * 0.02562 * 22 21 20 25 25 C 1.50703 * 109.47112 * 180.02562 * 24 22 21 26 26 N 1.34774 * 119.99632 * 179.97438 * 25 24 22 27 27 O 1.21277 * 119.99858 * 0.02562 * 25 24 22 28 28 C 1.47422 * 108.70114 * 1.06207 * 21 20 19 29 29 H 1.09002 * 109.46889 * 305.07483 * 1 2 3 30 30 H 1.08994 * 109.47036 * 65.07589 * 1 2 3 31 31 H 1.09002 * 109.46902 * 185.07690 * 1 2 3 32 32 H 0.97001 * 119.99700 * 264.99768 * 4 2 1 33 33 H 1.09006 * 109.46597 * 299.99815 * 7 5 4 34 34 H 1.08999 * 109.47138 * 59.99197 * 7 5 4 35 35 H 0.96998 * 120.00062 * 180.02562 * 12 11 9 36 36 H 1.08996 * 110.71889 * 88.02259 * 19 17 2 37 37 H 1.08997 * 110.72056 * 324.74972 * 19 17 2 38 38 H 1.09008 * 109.88100 * 262.77419 * 20 19 17 39 39 H 1.09003 * 110.00899 * 141.68559 * 20 19 17 40 40 H 1.09000 * 109.47039 * 300.00350 * 24 22 21 41 41 H 1.09001 * 109.46867 * 60.00106 * 24 22 21 42 42 H 0.96998 * 120.00286 * 0.02562 * 26 25 24 43 43 H 0.97007 * 119.99942 * 179.97438 * 26 25 24 44 44 H 1.08996 * 110.37143 * 94.70980 * 28 21 20 45 45 H 1.09006 * 110.36850 * 217.03227 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1963 5 6 2.1471 -0.0182 -2.3572 6 8 1.8591 1.1586 -2.4115 7 6 2.6488 -0.7287 -3.5879 8 16 2.7091 0.4343 -4.9735 9 6 3.3124 -0.6310 -6.2408 10 1 3.5226 -1.6672 -6.0207 11 6 3.5186 -0.1379 -7.5218 12 7 3.2630 1.1252 -7.7900 13 14 4.1589 -1.2670 -8.8653 14 1 4.3649 -2.6290 -8.3107 15 1 3.1715 -1.3282 -9.9727 16 1 5.4487 -0.7414 -9.3805 17 6 2.0400 -0.7213 1.2491 18 1 1.6883 -1.7527 1.2732 19 6 1.6260 0.0376 2.5376 20 6 2.7192 -0.3725 3.5467 21 7 3.8901 -0.8053 2.7700 22 6 5.0515 -1.2553 3.2847 23 8 5.9544 -1.5864 2.5458 24 6 5.2282 -1.3472 4.7786 25 6 6.6050 -1.8751 5.0900 26 7 6.9889 -2.0415 6.3711 27 8 7.3677 -2.1492 4.1878 28 6 3.5856 -0.6595 1.3350 29 1 -0.3633 0.5906 0.8411 30 1 -0.3633 0.4331 -0.9319 31 1 -0.3633 -1.0237 0.0909 32 1 2.2491 -1.6318 -1.1527 33 1 3.6480 -1.1212 -3.3987 34 1 1.9760 -1.5505 -3.8326 35 1 3.4068 1.4696 -8.6853 36 1 0.6438 -0.2893 2.8789 37 1 1.6389 1.1148 2.3717 38 1 2.3615 -1.1944 4.1671 39 1 2.9848 0.4777 4.1750 40 1 5.1105 -0.3576 5.2199 41 1 4.4781 -2.0212 5.1924 42 1 6.3790 -1.8220 7.0927 43 1 7.8750 -2.3817 6.5716 44 1 3.9479 0.2999 0.9658 45 1 4.0300 -1.4774 0.7678 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050358033.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:56 Heat of formation + Delta-G solvation = -112.106714 kcal Electronic energy + Delta-G solvation = -27052.785074 eV Core-core repulsion = 23003.310796 eV Total energy + Delta-G solvation = -4049.474278 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.79993 -39.79947 -38.97981 -37.63234 -35.27542 -34.05679 -32.45270 -32.38880 -31.05227 -30.20310 -28.84910 -28.38831 -25.45801 -24.21409 -23.07718 -21.54723 -20.64977 -20.28418 -19.50382 -17.98563 -17.74724 -17.66441 -17.00240 -16.44513 -16.27406 -16.07548 -15.49867 -15.12320 -14.89213 -14.77387 -14.43530 -14.09833 -14.01507 -13.83289 -13.63905 -13.29144 -13.04856 -12.88345 -12.81733 -12.58821 -12.34718 -12.27201 -11.96165 -11.74841 -11.42720 -11.24184 -11.04164 -10.98908 -10.92912 -10.71748 -10.53086 -10.06528 -9.77603 -9.75672 -9.36831 -9.04939 -8.94763 -8.91028 -8.20360 -6.46613 -6.18936 -3.89005 2.22726 2.41928 2.43713 3.02950 3.11233 3.20258 3.24430 3.30585 3.35362 3.68108 3.93733 4.07104 4.23437 4.26317 4.36050 4.49678 4.63529 4.71605 4.74772 4.91324 4.93336 5.12991 5.16414 5.18344 5.22293 5.29669 5.41251 5.53505 5.55811 5.61697 5.68052 5.75675 5.92754 5.93861 6.00663 6.16654 6.19224 6.36675 6.65514 6.86252 7.16763 7.63246 7.71591 7.84075 8.00310 8.38709 8.63015 9.26798 10.88542 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.013674 B = 0.002095 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.259730 B =13358.880808 C =15047.280458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.155 3.845 3 H 0.091 0.909 4 N -0.736 5.736 5 C 0.535 3.465 6 O -0.517 6.517 7 C -0.155 4.155 8 S -0.061 6.061 9 C -0.534 4.534 10 H 0.073 0.927 11 C 0.073 3.927 12 N -0.868 5.868 13 Si 0.919 3.081 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.280 1.280 17 C -0.108 4.108 18 H 0.091 0.909 19 C -0.122 4.122 20 C 0.099 3.901 21 N -0.624 5.624 22 C 0.525 3.475 23 O -0.490 6.490 24 C -0.161 4.161 25 C 0.513 3.487 26 N -0.861 5.861 27 O -0.494 6.494 28 C 0.113 3.887 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.398 0.602 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.267 0.733 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.399 0.601 43 H 0.403 0.597 44 H 0.073 0.927 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.101 -5.800 34.114 34.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.050 3.950 3 H 0.109 0.891 4 N -0.391 5.391 5 C 0.321 3.679 6 O -0.391 6.391 7 C -0.305 4.305 8 S 0.166 5.834 9 C -0.682 4.682 10 H 0.091 0.909 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.206 1.206 17 C -0.128 4.128 18 H 0.109 0.891 19 C -0.161 4.161 20 C -0.024 4.024 21 N -0.361 5.361 22 C 0.311 3.689 23 O -0.361 6.361 24 C -0.204 4.204 25 C 0.295 3.705 26 N -0.427 5.427 27 O -0.365 6.365 28 C -0.009 4.009 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.231 0.769 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.227 0.773 43 H 0.234 0.766 44 H 0.091 0.909 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.608 -4.027 32.758 33.201 hybrid contribution 0.729 -2.517 -0.132 2.624 sum -2.879 -6.544 32.626 33.400 Atomic orbital electron populations 1.22180 0.94962 1.01947 1.02962 1.20794 0.94179 0.97352 0.82697 0.89088 1.46097 1.69490 1.13974 1.09494 1.20287 0.76663 0.87191 0.83728 1.90695 1.48309 1.15722 1.84410 1.23544 1.03757 1.04855 0.98369 1.85362 1.86263 1.13001 0.98772 1.22916 1.50790 0.98201 0.96326 0.90868 1.24996 0.95115 0.95543 0.97979 1.70029 1.45698 1.13209 1.21401 0.86116 0.78517 0.80177 0.80692 1.19606 1.20598 1.20558 1.22682 0.94738 1.00762 0.94619 0.89067 1.22662 0.98269 1.01474 0.93673 1.22079 0.85938 0.99511 0.94875 1.48503 1.13911 1.65805 1.07926 1.19591 0.81275 0.78294 0.89760 1.90912 1.38844 1.45872 1.60518 1.21558 0.97575 1.05243 0.96040 1.20000 0.88866 0.78572 0.83044 1.43853 1.20496 1.70906 1.07418 1.90944 1.53607 1.47209 1.44765 1.22268 0.94343 1.02968 0.81326 0.91779 0.91449 0.92560 0.76859 0.89171 0.89248 0.92269 0.89374 0.89764 0.91294 0.91192 0.86103 0.86130 0.77325 0.76555 0.90865 0.90025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.23 37.16 0.34 -1.17 16 2 C 0.16 1.59 2.08 -67.93 -0.14 1.44 16 3 H 0.09 1.12 7.58 -51.93 -0.39 0.73 16 4 N -0.74 -9.32 4.84 -53.80 -0.26 -9.58 16 5 C 0.54 9.77 7.81 -10.99 -0.09 9.68 16 6 O -0.52 -11.44 15.52 5.56 0.09 -11.35 16 7 C -0.15 -3.15 6.16 36.00 0.22 -2.93 16 8 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 9 C -0.53 -15.46 9.50 30.94 0.29 -15.17 16 10 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 11 C 0.07 2.11 5.50 -17.43 -0.10 2.01 16 12 N -0.87 -26.50 13.22 55.49 0.73 -25.76 16 13 Si 0.92 21.84 29.55 -169.99 -5.02 16.81 16 14 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 C -0.11 -0.78 2.63 -88.47 -0.23 -1.01 16 18 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 19 C -0.12 -0.57 5.56 -24.89 -0.14 -0.71 16 20 C 0.10 0.43 6.49 -3.07 -0.02 0.41 16 21 N -0.62 -5.34 3.33 -170.52 -0.57 -5.90 16 22 C 0.52 5.69 7.84 -10.99 -0.09 5.61 16 23 O -0.49 -8.25 14.44 -18.96 -0.27 -8.52 16 24 C -0.16 -0.91 5.38 -29.03 -0.16 -1.06 16 25 C 0.51 4.45 8.09 -10.99 -0.09 4.36 16 26 N -0.86 -3.28 8.87 31.22 0.28 -3.00 16 27 O -0.49 -7.53 15.02 -18.96 -0.28 -7.81 16 28 C 0.11 1.12 6.14 -2.53 -0.02 1.10 16 29 H 0.06 0.46 7.60 -51.93 -0.39 0.06 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.40 4.07 8.60 -40.82 -0.35 3.71 16 33 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 34 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 35 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.08 0.41 8.04 -51.93 -0.42 0.00 16 38 H 0.07 0.17 8.14 -51.92 -0.42 -0.25 16 39 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.12 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.12 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.40 0.00 8.83 -40.82 -0.36 -0.36 16 43 H 0.40 1.44 8.93 -40.82 -0.36 1.08 16 44 H 0.07 0.84 8.04 -51.93 -0.42 0.43 16 45 H 0.08 0.94 8.04 -51.93 -0.42 0.53 16 LS Contribution 392.27 15.07 5.91 5.91 Total: -1.00 -42.68 392.27 -8.70 -51.38 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -6.89 Total: -0.87 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -0.20 Total: 2.57 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: 0.18 Total: -44.24 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.47 Total: -27.69 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -42.68 -8.70 -51.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050358033.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.728 kcal (2) G-P(sol) polarization free energy of solvation -42.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds