Wall clock time and date at job start Wed Apr 1 2020 01:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47004 * 2 1 4 4 N 1.46499 * 109.47414 * 120.00142 * 2 1 3 5 5 C 1.34776 * 120.00120 * 275.00026 * 4 2 1 6 6 O 1.21277 * 119.99718 * 359.97438 * 5 4 2 7 7 C 1.50704 * 119.99935 * 179.97438 * 5 4 2 8 8 S 1.80995 * 109.47026 * 180.02562 * 7 5 4 9 9 C 1.76204 * 99.99847 * 180.02562 * 8 7 5 10 10 H 1.07990 * 120.00104 * 359.97438 * 9 8 7 11 11 C 1.38803 * 119.99652 * 180.02562 * 9 8 7 12 12 N 1.31631 * 119.99396 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 120.00189 * 0.02562 * 11 9 8 14 14 H 1.48496 * 109.47091 * 89.99775 * 13 11 9 15 15 H 1.48506 * 109.46924 * 210.00156 * 13 11 9 16 16 H 1.48500 * 109.46986 * 329.99847 * 13 11 9 17 17 C 1.53001 * 109.47118 * 240.00652 * 2 1 3 18 18 H 1.09008 * 110.88480 * 301.72506 * 17 2 1 19 19 C 1.55151 * 111.00752 * 65.60756 * 17 2 1 20 20 C 1.54369 * 102.92460 * 153.55103 * 19 17 2 21 21 N 1.47022 * 107.28337 * 337.85982 * 20 19 17 22 22 C 1.34776 * 125.64642 * 178.87368 * 21 20 19 23 23 O 1.21284 * 120.00072 * 180.02562 * 22 21 20 24 24 C 1.50700 * 120.00231 * 0.04102 * 22 21 20 25 25 C 1.50699 * 109.47289 * 180.02562 * 24 22 21 26 26 N 1.34779 * 119.99971 * 180.02562 * 25 24 22 27 27 O 1.21283 * 120.00352 * 359.97438 * 25 24 22 28 28 C 1.47423 * 108.70480 * 358.90896 * 21 20 19 29 29 H 1.08999 * 109.47090 * 295.02756 * 1 2 3 30 30 H 1.09002 * 109.46969 * 175.02975 * 1 2 3 31 31 H 1.09001 * 109.47264 * 55.02737 * 1 2 3 32 32 H 0.96999 * 119.99775 * 94.99807 * 4 2 1 33 33 H 1.09000 * 109.46983 * 300.00278 * 7 5 4 34 34 H 1.09002 * 109.47056 * 60.00108 * 7 5 4 35 35 H 0.97003 * 119.99105 * 179.97438 * 12 11 9 36 36 H 1.09006 * 110.72334 * 271.94249 * 19 17 2 37 37 H 1.09000 * 110.71950 * 35.21363 * 19 17 2 38 38 H 1.09000 * 109.90228 * 218.42587 * 20 19 17 39 39 H 1.08997 * 109.97801 * 97.33771 * 20 19 17 40 40 H 1.09001 * 109.47070 * 300.00421 * 24 22 21 41 41 H 1.08998 * 109.47098 * 59.99976 * 24 22 21 42 42 H 0.97004 * 120.00121 * 359.97438 * 26 25 24 43 43 H 0.97001 * 120.00012 * 179.97438 * 26 25 24 44 44 H 1.08996 * 110.36555 * 265.28378 * 28 21 20 45 45 H 1.09002 * 110.45815 * 143.01243 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8591 1.1585 2.4115 7 6 2.6490 -0.7289 3.5877 8 16 2.7093 0.4339 4.9734 9 6 3.3127 -0.6314 6.2406 10 1 3.5220 -1.6677 6.0206 11 6 3.5180 -0.1388 7.5219 12 7 3.9683 -0.9347 8.4687 13 14 3.1538 1.6533 7.9031 14 1 1.7427 1.7885 8.3452 15 1 4.0583 2.1234 8.9831 16 1 3.3712 2.4727 6.6838 17 6 2.0399 -0.7211 -1.2493 18 1 1.6646 -1.7438 -1.2882 19 6 1.6614 0.0595 -2.5356 20 6 2.7598 -0.3657 -3.5334 21 7 3.9089 -0.8337 -2.7448 22 6 5.0646 -1.3112 -3.2477 23 8 5.9488 -1.6710 -2.4996 24 6 5.2583 -1.3977 -4.7397 25 6 6.6239 -1.9613 -5.0371 26 7 7.0200 -2.1296 -6.3144 27 8 7.3670 -2.2626 -4.1272 28 6 3.5875 -0.6950 -1.3127 29 1 -0.3633 0.4348 0.9312 30 1 -0.3633 -1.0238 -0.0890 31 1 -0.3634 0.5890 -0.8421 32 1 2.2490 -1.6318 1.1525 33 1 1.9761 -1.5508 3.8324 34 1 3.6481 -1.1215 3.3985 35 1 4.1120 -0.5903 9.3640 36 1 0.6768 -0.2414 -2.8937 37 1 1.6966 1.1345 -2.3587 38 1 3.0535 0.4859 -4.1471 39 1 2.3936 -1.1718 -4.1691 40 1 4.4959 -2.0484 -5.1680 41 1 5.1729 -0.4023 -5.1755 42 1 6.4258 -1.8882 -7.0422 43 1 7.8991 -2.4920 -6.5058 44 1 3.9670 0.2519 -0.9288 45 1 4.0045 -1.5277 -0.7462 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050358034.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:58 Heat of formation + Delta-G solvation = -111.764496 kcal Electronic energy + Delta-G solvation = -27110.641937 eV Core-core repulsion = 23061.182499 eV Total energy + Delta-G solvation = -4049.459438 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.82658 -39.85854 -39.04926 -37.67420 -35.35127 -34.06707 -32.51689 -32.40072 -31.10120 -30.26438 -28.89627 -28.50801 -25.58463 -24.25853 -23.13248 -21.56953 -20.70882 -20.39775 -19.53202 -18.01556 -17.77318 -17.67785 -17.02893 -16.52491 -16.30584 -16.13346 -15.54788 -15.16823 -15.01684 -14.91286 -14.48311 -14.13098 -13.96455 -13.80825 -13.68994 -13.39682 -13.14150 -12.91839 -12.85133 -12.76933 -12.38506 -12.32798 -12.07506 -11.84410 -11.49019 -11.29072 -11.23591 -10.99369 -10.98317 -10.56312 -10.54530 -10.07402 -9.83213 -9.77606 -9.50025 -9.03282 -8.97328 -8.96032 -8.47520 -6.88665 -6.25825 -3.97385 2.21327 2.39642 2.41797 2.77233 2.98009 3.18507 3.29188 3.35325 3.52690 3.64260 3.90347 4.02933 4.22947 4.31600 4.35769 4.47638 4.60707 4.69663 4.71742 4.75664 4.87828 4.90935 5.09596 5.13143 5.16201 5.20779 5.33059 5.37204 5.50377 5.52912 5.58687 5.70800 5.79974 5.90182 5.93207 6.05418 6.11086 6.35851 6.55723 6.85193 7.14114 7.60629 7.82542 7.97351 7.98675 8.45398 8.49734 9.20272 10.83466 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.014885 B = 0.002128 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.631020 B =13153.142210 C =14589.474002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.156 3.844 3 H 0.091 0.909 4 N -0.734 5.734 5 C 0.534 3.466 6 O -0.519 6.519 7 C -0.125 4.125 8 S -0.142 6.142 9 C -0.521 4.521 10 H 0.088 0.912 11 C 0.095 3.905 12 N -0.880 5.880 13 Si 0.857 3.143 14 H -0.267 1.267 15 H -0.274 1.274 16 H -0.235 1.235 17 C -0.109 4.109 18 H 0.092 0.908 19 C -0.122 4.122 20 C 0.099 3.901 21 N -0.624 5.624 22 C 0.525 3.475 23 O -0.489 6.489 24 C -0.161 4.161 25 C 0.513 3.487 26 N -0.861 5.861 27 O -0.494 6.494 28 C 0.113 3.887 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.399 0.601 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.270 0.730 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.399 0.601 43 H 0.404 0.596 44 H 0.073 0.927 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.534 -1.154 -36.143 36.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.050 3.950 3 H 0.109 0.891 4 N -0.388 5.388 5 C 0.320 3.680 6 O -0.394 6.394 7 C -0.276 4.276 8 S 0.084 5.916 9 C -0.668 4.668 10 H 0.106 0.894 11 C -0.114 4.114 12 N -0.517 5.517 13 Si 0.682 3.318 14 H -0.192 1.192 15 H -0.200 1.200 16 H -0.159 1.159 17 C -0.129 4.129 18 H 0.110 0.890 19 C -0.161 4.161 20 C -0.024 4.024 21 N -0.362 5.362 22 C 0.311 3.689 23 O -0.361 6.361 24 C -0.204 4.204 25 C 0.295 3.705 26 N -0.427 5.427 27 O -0.365 6.365 28 C -0.009 4.009 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.233 0.767 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.227 0.773 43 H 0.235 0.765 44 H 0.091 0.909 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.002 0.414 -34.718 35.079 hybrid contribution 0.258 -1.218 -0.286 1.277 sum -4.744 -0.804 -35.004 35.333 Atomic orbital electron populations 1.22179 0.94890 1.02046 1.02945 1.20809 0.94219 0.97322 0.82645 0.89073 1.46055 1.69273 1.14073 1.09435 1.20262 0.76732 0.87187 0.83814 1.90692 1.48507 1.15712 1.84458 1.23292 1.04584 1.03454 0.96267 1.84750 1.87116 1.16622 1.03086 1.22323 1.50563 0.98717 0.95238 0.89375 1.24725 0.93402 0.98284 0.94975 1.69946 1.43473 1.35763 1.02502 0.86726 0.79250 0.85267 0.80544 1.19245 1.19966 1.15928 1.22687 0.94855 1.00727 0.94589 0.88992 1.22668 0.98353 1.01263 0.93778 1.22082 0.86395 0.99198 0.94724 1.48497 1.15154 1.64629 1.07883 1.19599 0.81138 0.78345 0.89837 1.90917 1.39793 1.45505 1.59854 1.21555 0.97713 1.05065 0.96075 1.19999 0.88555 0.78852 0.83090 1.43853 1.21724 1.69665 1.07426 1.90948 1.54269 1.47213 1.44077 1.22256 0.94109 1.03027 0.81527 0.91495 0.92472 0.91731 0.76675 0.88516 0.88397 0.91968 0.89354 0.89789 0.91195 0.91252 0.86124 0.86104 0.77326 0.76541 0.90902 0.89986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.25 37.15 0.34 -1.07 16 2 C 0.16 1.49 2.09 -67.93 -0.14 1.34 16 3 H 0.09 1.05 7.56 -51.93 -0.39 0.66 16 4 N -0.73 -8.74 4.79 -53.81 -0.26 -9.00 16 5 C 0.53 9.21 7.81 -10.98 -0.09 9.12 16 6 O -0.52 -10.83 15.52 5.56 0.09 -10.74 16 7 C -0.13 -2.44 6.16 36.01 0.22 -2.22 16 8 S -0.14 -3.63 18.55 -107.50 -1.99 -5.63 16 9 C -0.52 -15.23 10.04 30.94 0.31 -14.92 16 10 H 0.09 2.69 8.03 -52.49 -0.42 2.27 16 11 C 0.09 2.81 5.50 -17.43 -0.10 2.72 16 12 N -0.88 -26.96 13.97 55.49 0.78 -26.18 16 13 Si 0.86 22.08 27.74 -169.99 -4.72 17.37 16 14 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.24 -6.05 6.74 56.52 0.38 -5.67 16 17 C -0.11 -0.73 2.62 -88.48 -0.23 -0.97 16 18 H 0.09 0.55 8.14 -51.92 -0.42 0.13 16 19 C -0.12 -0.52 5.65 -24.88 -0.14 -0.66 16 20 C 0.10 0.40 6.49 -3.04 -0.02 0.38 16 21 N -0.62 -5.16 3.33 -170.50 -0.57 -5.73 16 22 C 0.52 5.58 7.84 -10.99 -0.09 5.50 16 23 O -0.49 -8.15 14.44 -18.96 -0.27 -8.42 16 24 C -0.16 -0.88 5.38 -29.04 -0.16 -1.04 16 25 C 0.51 4.39 8.09 -10.98 -0.09 4.30 16 26 N -0.86 -3.20 8.87 31.22 0.28 -2.92 16 27 O -0.49 -7.48 15.02 -18.96 -0.28 -7.76 16 28 C 0.11 1.07 6.10 -2.53 -0.02 1.06 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.43 7.65 -51.93 -0.40 0.03 16 32 H 0.40 3.83 8.60 -40.82 -0.35 3.48 16 33 H 0.10 1.75 8.14 -51.92 -0.42 1.32 16 34 H 0.10 1.81 8.14 -51.92 -0.42 1.39 16 35 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 36 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.08 0.38 8.02 -51.93 -0.42 -0.04 16 38 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 40 H 0.12 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.12 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.40 -0.04 8.83 -40.82 -0.36 -0.40 16 43 H 0.40 1.41 8.93 -40.82 -0.36 1.05 16 44 H 0.07 0.80 8.04 -51.93 -0.42 0.39 16 45 H 0.08 0.91 8.04 -51.93 -0.42 0.50 16 LS Contribution 389.61 15.07 5.87 5.87 Total: -1.00 -42.38 389.61 -8.19 -50.57 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -6.92 Total: -0.97 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -0.19 Total: 3.54 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.23 Total: -43.83 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.47 Total: -26.92 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.72 Total: 17.37 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -42.38 -8.19 -50.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050358034.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.194 kcal (2) G-P(sol) polarization free energy of solvation -42.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds