Wall clock time and date at job start Wed Apr 1 2020 02:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21277 * 119.99808 * 2 1 4 4 N 1.34776 * 119.99977 * 180.02562 * 2 1 3 5 5 C 1.46492 * 120.00063 * 179.97438 * 4 2 1 6 6 C 1.50703 * 109.47441 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99488 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00290 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99828 * 180.27728 * 8 6 5 10 10 H 1.09003 * 109.49690 * 324.65667 * 9 8 6 11 11 C 1.53044 * 109.49654 * 204.56071 * 9 8 6 12 12 C 1.53043 * 109.53788 * 178.68172 * 11 9 8 13 13 C 1.53198 * 109.31106 * 61.36425 * 12 11 9 14 14 N 1.46917 * 108.77595 * 305.36540 * 13 12 11 15 15 C 1.34780 * 120.63135 * 233.59197 * 14 13 12 16 16 O 1.21281 * 120.00110 * 180.02562 * 15 14 13 17 17 C 1.50706 * 119.99639 * 0.02562 * 15 14 13 18 18 S 1.81001 * 109.47048 * 180.02562 * 17 15 14 19 19 C 1.76196 * 99.99873 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00118 * 359.97438 * 19 18 17 21 21 C 1.38798 * 119.99868 * 179.97438 * 19 18 17 22 22 N 1.31633 * 120.00057 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00112 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47245 * 90.00055 * 23 21 19 25 25 H 1.48500 * 109.47165 * 210.00286 * 23 21 19 26 26 H 1.48500 * 109.47117 * 330.00057 * 23 21 19 27 27 C 1.46928 * 118.74436 * 53.60872 * 14 13 12 28 28 H 1.08997 * 109.47150 * 239.99872 * 1 2 3 29 29 H 1.08998 * 109.46953 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47477 * 119.99767 * 1 2 3 31 31 H 0.97003 * 119.99587 * 359.97438 * 4 2 1 32 32 H 1.08998 * 109.47276 * 59.99919 * 5 4 2 33 33 H 1.09002 * 109.47526 * 300.00230 * 5 4 2 34 34 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 35 35 H 1.08995 * 109.45571 * 298.70492 * 11 9 8 36 36 H 1.08995 * 109.45849 * 58.65960 * 11 9 8 37 37 H 1.08996 * 109.49454 * 301.41474 * 12 11 9 38 38 H 1.09003 * 109.52086 * 181.33123 * 12 11 9 39 39 H 1.08997 * 109.58373 * 185.57396 * 13 12 11 40 40 H 1.08996 * 109.58306 * 65.15145 * 13 12 11 41 41 H 1.09007 * 109.46788 * 300.00403 * 17 15 14 42 42 H 1.08992 * 109.46929 * 60.00227 * 17 15 14 43 43 H 0.97000 * 119.99799 * 180.02562 * 22 21 19 44 44 H 1.08998 * 109.59038 * 186.60632 * 27 14 13 45 45 H 1.08999 * 109.70425 * 66.24646 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6458 -1.1672 -0.0011 6 6 4.1482 -2.5880 -0.0022 7 8 3.3600 -3.5098 -0.0021 8 7 5.4733 -2.8343 -0.0024 9 6 5.9616 -4.2155 -0.0096 10 1 5.2920 -4.8412 0.5807 11 6 7.3684 -4.2631 0.5911 12 6 7.8664 -5.7101 0.6141 13 6 7.9344 -6.2454 -0.8197 14 7 6.6205 -6.0695 -1.4530 15 6 5.9890 -7.1133 -2.0258 16 8 4.9048 -6.9551 -2.5458 17 6 6.6301 -8.4772 -2.0200 18 16 5.5448 -9.6576 -2.8595 19 6 6.5118 -11.1228 -2.7092 20 1 7.4684 -11.0895 -2.2089 21 6 6.0442 -12.3198 -3.2337 22 7 6.7664 -13.4145 -3.1209 23 14 4.3894 -12.3775 -4.0983 24 1 4.5773 -12.1037 -5.5457 25 1 3.7861 -13.7231 -3.9233 26 1 3.4891 -11.3516 -3.5133 27 6 6.0080 -4.7339 -1.4505 28 1 -0.3633 -0.5138 0.8899 29 1 -0.3633 1.0277 0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 1.6958 -2.0072 -0.0005 32 1 4.0095 -0.6536 0.8888 33 1 4.0089 -0.6532 -0.8911 34 1 6.1036 -2.0970 -0.0021 35 1 8.0422 -3.6567 -0.0141 36 1 7.3424 -3.8717 1.6080 37 1 7.1794 -6.3219 1.1987 38 1 8.8587 -5.7466 1.0636 39 1 8.1931 -7.3041 -0.8025 40 1 8.6875 -5.6922 -1.3808 41 1 7.5872 -8.4309 -2.5397 42 1 6.7906 -8.7988 -0.9911 43 1 6.4398 -14.2509 -3.4878 44 1 4.9956 -4.7954 -1.8495 45 1 6.6019 -4.0561 -2.0636 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070452781.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:13 Heat of formation + Delta-G solvation = -111.989275 kcal Electronic energy + Delta-G solvation = -27173.165240 eV Core-core repulsion = 23123.696054 eV Total energy + Delta-G solvation = -4049.469186 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.83875 -40.03632 -39.31095 -37.46529 -35.09847 -34.75027 -32.55819 -32.43960 -31.32707 -30.57447 -29.03901 -27.19848 -25.69922 -25.27211 -23.39483 -21.40849 -21.04511 -20.97049 -19.22561 -18.15410 -17.75901 -17.12001 -16.81701 -16.52260 -16.41221 -15.88583 -15.84093 -15.33848 -15.05351 -14.94927 -14.72411 -14.25002 -13.99191 -13.83683 -13.52190 -13.47250 -13.36416 -13.19475 -12.97723 -12.90235 -12.79736 -12.44455 -12.10781 -11.93502 -11.42695 -11.37941 -11.24042 -11.01386 -10.97073 -10.60850 -10.42479 -10.37892 -9.88005 -9.77231 -9.61784 -9.47749 -9.01120 -8.62900 -8.49606 -6.92988 -6.29883 -4.01660 2.07252 2.21917 2.26995 2.69267 2.89786 2.99697 3.22219 3.32996 3.50869 3.57846 4.10223 4.28771 4.32768 4.43416 4.45482 4.56695 4.61040 4.74037 4.80509 4.82154 4.91625 4.97113 4.98608 5.04755 5.09267 5.14180 5.26608 5.42660 5.42929 5.53407 5.58620 5.61317 5.72636 5.77522 5.82310 5.87070 5.95178 5.99483 6.48505 6.93471 7.04889 7.39948 7.67103 7.76282 7.93062 8.39839 8.40767 9.16441 10.79194 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.014916 B = 0.002210 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.667471 B =12667.013659 C =14266.809551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.514 3.486 3 O -0.550 6.550 4 N -0.721 5.721 5 C 0.100 3.900 6 C 0.507 3.493 7 O -0.524 6.524 8 N -0.720 5.720 9 C 0.131 3.869 10 H 0.096 0.904 11 C -0.125 4.125 12 C -0.132 4.132 13 C 0.103 3.897 14 N -0.617 5.617 15 C 0.533 3.467 16 O -0.513 6.513 17 C -0.121 4.121 18 S -0.142 6.142 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.105 3.895 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.415 0.585 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.404 0.596 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.271 0.729 44 H 0.098 0.902 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.737 26.660 10.168 28.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.302 3.698 3 O -0.428 6.428 4 N -0.377 5.377 5 C -0.028 4.028 6 C 0.292 3.708 7 O -0.400 6.400 8 N -0.372 5.372 9 C 0.026 3.974 10 H 0.114 0.886 11 C -0.163 4.163 12 C -0.171 4.171 13 C -0.020 4.020 14 N -0.354 5.354 15 C 0.321 3.679 16 O -0.387 6.387 17 C -0.271 4.271 18 S 0.084 5.916 19 C -0.668 4.668 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.019 4.019 28 H 0.109 0.891 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.253 0.747 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.239 0.761 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.113 0.887 40 H 0.089 0.911 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.081 0.919 44 H 0.116 0.884 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.485 26.749 9.353 28.446 hybrid contribution 0.975 -0.568 0.229 1.151 sum -1.510 26.181 9.582 27.920 Atomic orbital electron populations 1.21906 0.90957 1.05691 1.04742 1.20863 0.90876 0.82904 0.75179 1.90728 1.70912 1.31421 1.49755 1.45813 1.05858 1.10207 1.75828 1.21040 0.82769 0.94049 1.04932 1.20580 0.82894 0.91174 0.76124 1.90791 1.54934 1.45779 1.48460 1.45855 1.06743 1.08949 1.75655 1.21397 0.96201 0.82354 0.97463 0.88613 1.21800 0.94844 0.98107 1.01571 1.21900 1.02551 0.95424 0.97242 1.21809 0.84405 1.03068 0.92703 1.47990 1.20289 1.08380 1.58702 1.20345 0.85049 0.85363 0.77126 1.90709 1.20399 1.84076 1.43506 1.23308 1.03792 0.94551 1.05458 1.84845 1.28540 1.03421 1.74785 1.22300 1.07785 0.92798 1.43961 0.89387 1.24710 0.97547 0.94377 0.94672 1.69938 1.37770 0.99665 1.44277 0.86739 0.84616 0.79272 0.81267 1.19213 1.19932 1.15896 1.21827 1.00991 0.83516 0.95615 0.89123 0.88745 0.89032 0.74717 0.88288 0.88216 0.76138 0.90967 0.90833 0.90790 0.89784 0.88728 0.91149 0.88501 0.88441 0.91943 0.88411 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.86 10.32 36.01 0.37 -0.48 16 2 C 0.51 4.39 7.94 -10.99 -0.09 4.31 16 3 O -0.55 -6.76 17.09 5.56 0.09 -6.67 16 4 N -0.72 -5.63 5.53 -61.48 -0.34 -5.97 16 5 C 0.10 0.68 6.15 -5.20 -0.03 0.65 16 6 C 0.51 4.43 7.86 -10.98 -0.09 4.34 16 7 O -0.52 -6.89 15.33 5.55 0.09 -6.80 16 8 N -0.72 -4.70 5.08 -53.68 -0.27 -4.97 16 9 C 0.13 1.15 2.60 -67.81 -0.18 0.97 16 10 H 0.10 1.13 7.59 -51.93 -0.39 0.73 16 11 C -0.13 -0.74 5.35 -26.69 -0.14 -0.88 16 12 C -0.13 -0.93 6.08 -26.61 -0.16 -1.09 16 13 C 0.10 0.96 6.34 -3.71 -0.02 0.93 16 14 N -0.62 -8.11 2.97 -172.77 -0.51 -8.62 16 15 C 0.53 9.72 7.72 -10.98 -0.08 9.63 16 16 O -0.51 -11.45 15.28 5.56 0.08 -11.37 16 17 C -0.12 -2.33 4.50 36.01 0.16 -2.16 16 18 S -0.14 -3.63 18.55 -107.50 -1.99 -5.62 16 19 C -0.52 -14.92 10.04 30.94 0.31 -14.61 16 20 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 21 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 22 N -0.88 -26.42 13.97 55.49 0.78 -25.65 16 23 Si 0.86 21.84 27.74 -169.99 -4.71 17.13 16 24 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 25 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 26 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 27 C 0.10 1.21 6.00 -3.71 -0.02 1.19 16 28 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 0.46 8.12 -51.93 -0.42 0.04 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.41 3.18 7.44 -40.82 -0.30 2.87 16 32 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.40 1.28 8.60 -40.82 -0.35 0.93 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.09 0.92 5.93 -51.93 -0.31 0.62 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.10 1.72 7.94 -51.91 -0.41 1.31 16 42 H 0.10 1.74 7.69 -51.92 -0.40 1.34 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.10 1.49 7.01 -51.93 -0.36 1.13 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 386.98 15.07 5.83 5.83 Total: -1.00 -38.86 386.98 -7.79 -46.65 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.76 Total: 0.56 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -0.07 Total: 5.50 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: -0.35 Total: -45.21 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: 0.27 Total: -24.84 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.71 Total: 17.13 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.86 -7.79 -46.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070452781.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.344 kcal (2) G-P(sol) polarization free energy of solvation -38.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds