Wall clock time and date at job start Wed Apr 1 2020 01:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08994 * 109.46667 * 2 1 4 4 C 1.53001 * 109.46944 * 120.00339 * 2 1 3 5 5 C 1.53002 * 109.47103 * 185.00391 * 4 2 1 6 6 N 1.46501 * 109.47158 * 180.02562 * 5 4 2 7 7 C 1.34776 * 119.99674 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99923 * 359.97438 * 7 6 5 9 9 C 1.50695 * 119.99561 * 179.97438 * 7 6 5 10 10 S 1.81002 * 109.46923 * 179.97438 * 9 7 6 11 11 C 1.76201 * 100.00078 * 180.02562 * 10 9 7 12 12 H 1.08001 * 119.99948 * 359.97438 * 11 10 9 13 13 C 1.38796 * 120.00170 * 179.97438 * 11 10 9 14 14 N 1.31636 * 120.00161 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00138 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46896 * 60.00099 * 15 13 11 17 17 H 1.48498 * 109.47150 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47363 * 300.00003 * 15 13 11 19 19 N 1.46497 * 109.46973 * 239.99962 * 2 1 3 20 20 C 1.34778 * 119.99898 * 85.00068 * 19 2 1 21 21 O 1.21283 * 119.99885 * 5.16002 * 20 19 2 22 22 C 1.50702 * 119.99815 * 185.15188 * 20 19 2 23 23 C 1.50692 * 115.56496 * 269.50793 * 22 20 19 24 24 N 1.34777 * 120.00226 * 330.23777 * 23 22 20 25 25 O 1.21285 * 120.00134 * 150.23249 * 23 22 20 26 26 C 1.53007 * 117.49469 * 123.82378 * 22 20 19 27 27 C 1.52998 * 59.99972 * 252.51048 * 26 22 20 28 28 H 1.08990 * 109.46990 * 299.99691 * 1 2 3 29 29 H 1.09000 * 109.46770 * 59.99939 * 1 2 3 30 30 H 1.09003 * 109.46543 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46750 * 304.99692 * 4 2 1 32 32 H 1.08998 * 109.47231 * 65.00112 * 4 2 1 33 33 H 1.09009 * 109.46655 * 299.99776 * 5 4 2 34 34 H 1.09003 * 109.47223 * 59.99274 * 5 4 2 35 35 H 0.96996 * 119.99818 * 359.97438 * 6 5 4 36 36 H 1.08997 * 109.47852 * 299.99686 * 9 7 6 37 37 H 1.09003 * 109.47464 * 59.99885 * 9 7 6 38 38 H 0.96995 * 119.99918 * 179.97438 * 14 13 11 39 39 H 0.97005 * 120.00427 * 264.99678 * 19 2 1 40 40 H 0.97001 * 119.99968 * 354.87533 * 24 23 22 41 41 H 0.97003 * 120.00307 * 174.87672 * 24 23 22 42 42 H 1.09006 * 117.49798 * 0.02562 * 26 22 20 43 43 H 1.08998 * 117.49518 * 145.01558 * 26 22 20 44 44 H 1.09002 * 117.49702 * 252.51252 * 27 26 22 45 45 H 1.09004 * 117.49999 * 107.49081 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6133 1.3138 6 7 4.0532 -1.3045 2.5096 7 6 5.3742 -1.3408 2.7747 8 8 6.1585 -0.8016 2.0230 9 6 5.8764 -2.0513 4.0050 10 16 7.6805 -1.9249 4.0805 11 6 7.9875 -2.8148 5.5699 12 1 7.1637 -3.2368 6.1265 13 6 9.2881 -2.9735 6.0280 14 7 10.2922 -2.4596 5.3495 15 14 9.6136 -3.9163 7.6075 16 1 9.1107 -5.3064 7.4667 17 1 11.0737 -3.9424 7.8764 18 1 8.9150 -3.2490 8.7353 19 7 2.0184 -0.6906 -1.1961 20 6 2.1471 -0.0182 -2.3571 21 8 1.9488 1.1778 -2.3904 22 6 2.5376 -0.7526 -3.6138 23 6 4.0174 -0.8341 -3.8862 24 7 4.8366 0.1464 -3.4573 25 8 4.4714 -1.7822 -4.4913 26 6 1.6028 -0.6360 -4.8195 27 6 1.6755 -1.9456 -4.0317 28 1 -0.3633 0.5137 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.6054 -0.2618 2.1370 32 1 1.7517 -1.7716 1.2055 33 1 3.9995 -1.0728 0.4259 34 1 3.8532 0.4370 1.3574 35 1 3.4259 -1.7360 3.1105 36 1 5.4423 -1.5916 4.8929 37 1 5.5877 -3.1014 3.9616 38 1 11.2010 -2.5702 5.6698 39 1 2.2491 -1.6318 -1.1526 40 1 4.4664 0.9396 -3.0394 41 1 5.7965 0.0590 -3.5665 42 1 0.7056 -0.0278 -4.7038 43 1 2.0583 -0.6182 -5.8096 44 1 2.1789 -2.7894 -4.5036 45 1 0.8260 -2.1993 -3.3976 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075678200.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:51 Heat of formation + Delta-G solvation = -100.176749 kcal Electronic energy + Delta-G solvation = -27032.401108 eV Core-core repulsion = 22983.444152 eV Total energy + Delta-G solvation = -4048.956956 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.16717 -39.54937 -39.11187 -37.12581 -36.31330 -34.53026 -33.94812 -32.44640 -31.96255 -30.15862 -28.20955 -26.10605 -25.51058 -23.81780 -23.02773 -22.62983 -21.26739 -20.41243 -20.02587 -18.52457 -17.85639 -17.56235 -16.93370 -16.44681 -16.19973 -15.98288 -15.50085 -15.32940 -15.06145 -14.82124 -14.66234 -14.44224 -14.22552 -13.98181 -13.83784 -13.55665 -13.26770 -12.98968 -12.63663 -12.48991 -12.24444 -12.13454 -11.78107 -11.66560 -11.63450 -11.36030 -11.12399 -11.06599 -11.05305 -10.78519 -10.59184 -10.12832 -10.02210 -9.84836 -9.62694 -9.43789 -9.08384 -8.95566 -8.26583 -6.52411 -6.23259 -3.94304 1.91761 2.08738 2.50085 2.97883 3.00606 3.04976 3.22068 3.25906 3.28852 3.31625 3.63939 4.04468 4.18691 4.20138 4.26548 4.36164 4.43494 4.44584 4.63924 4.95508 4.97830 5.04122 5.11006 5.11765 5.16162 5.21733 5.25210 5.30943 5.47566 5.56706 5.58320 5.63956 5.72893 5.84631 5.85574 6.00488 6.10091 6.43050 6.53233 6.93028 6.96923 7.57258 7.63686 7.65677 7.86057 8.33108 8.55884 9.21816 10.84109 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.016349 B = 0.002031 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.258483 B =13779.941008 C =14865.223240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.143 3.857 3 H 0.096 0.904 4 C -0.140 4.140 5 C 0.121 3.879 6 N -0.740 5.740 7 C 0.531 3.469 8 O -0.516 6.516 9 C -0.153 4.153 10 S -0.060 6.060 11 C -0.536 4.536 12 H 0.072 0.928 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 N -0.716 5.716 20 C 0.556 3.444 21 O -0.527 6.527 22 C -0.204 4.204 23 C 0.565 3.435 24 N -0.844 5.844 25 O -0.534 6.534 26 C -0.117 4.117 27 C -0.132 4.132 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.398 0.602 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.269 0.731 39 H 0.405 0.595 40 H 0.406 0.594 41 H 0.409 0.591 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.120 0.880 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.337 3.528 -15.245 28.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.039 3.961 3 H 0.114 0.886 4 C -0.179 4.179 5 C -0.004 4.004 6 N -0.395 5.395 7 C 0.317 3.683 8 O -0.390 6.390 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.685 4.685 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.199 1.199 19 N -0.368 5.368 20 C 0.340 3.660 21 O -0.402 6.402 22 C -0.211 4.211 23 C 0.348 3.652 24 N -0.407 5.407 25 O -0.410 6.410 26 C -0.155 4.155 27 C -0.170 4.170 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.232 0.768 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.240 0.760 40 H 0.236 0.764 41 H 0.241 0.759 42 H 0.129 0.871 43 H 0.130 0.870 44 H 0.138 0.862 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -22.847 4.666 -16.926 28.814 hybrid contribution -0.600 -1.475 2.494 2.958 sum -23.446 3.192 -14.432 27.716 Atomic orbital electron populations 1.22172 0.94521 1.02445 1.02922 1.20978 0.94275 0.97923 0.82956 0.88575 1.22136 0.95533 1.02038 0.98147 1.21251 0.92544 0.98003 0.88554 1.45990 1.07857 1.58621 1.27054 1.20330 0.81451 0.79697 0.86828 1.90706 1.54942 1.44344 1.49041 1.23529 1.06934 1.02532 0.97421 1.85411 0.92082 1.72677 1.33193 1.22820 0.95441 1.40285 1.09920 0.90973 1.24999 0.95043 0.95642 0.97914 1.70007 0.99411 1.42546 1.38304 0.86219 0.77386 0.79934 0.81927 1.19929 1.20798 1.19938 1.46113 1.66832 1.14521 1.09304 1.19181 0.76591 0.86857 0.83351 1.90743 1.49828 1.14087 1.85572 1.21530 0.93208 1.08258 0.98073 1.18870 0.86021 0.82153 0.78128 1.43787 1.10968 1.22298 1.63690 1.90781 1.76425 1.33120 1.40697 1.23031 0.98848 0.99739 0.93902 1.23174 0.99561 0.92151 1.02099 0.91126 0.91981 0.92172 0.89209 0.90404 0.91749 0.91520 0.76820 0.89215 0.89234 0.92100 0.76034 0.76419 0.75915 0.87064 0.87037 0.86212 0.87241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.84 9.48 37.16 0.35 -0.49 16 2 C 0.14 0.90 2.62 -67.93 -0.18 0.73 16 3 H 0.10 0.77 7.51 -51.93 -0.39 0.38 16 4 C -0.14 -0.82 4.87 -26.73 -0.13 -0.95 16 5 C 0.12 1.23 5.56 -4.04 -0.02 1.20 16 6 N -0.74 -8.95 5.56 -60.29 -0.33 -9.28 16 7 C 0.53 9.58 7.85 -10.99 -0.09 9.49 16 8 O -0.52 -11.52 15.86 5.56 0.09 -11.44 16 9 C -0.15 -3.02 6.16 36.00 0.22 -2.80 16 10 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 11 C -0.54 -15.17 9.50 30.94 0.29 -14.88 16 12 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 13 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 14 N -0.87 -26.10 13.22 55.49 0.73 -25.37 16 15 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 19 N -0.72 -4.76 4.52 -53.80 -0.24 -5.01 16 20 C 0.56 4.76 6.06 -10.98 -0.07 4.70 16 21 O -0.53 -5.95 16.50 5.56 0.09 -5.85 16 22 C -0.20 -1.66 2.38 -156.81 -0.37 -2.03 16 23 C 0.57 5.96 7.68 -10.99 -0.08 5.87 16 24 N -0.84 -7.52 8.74 31.22 0.27 -7.25 16 25 O -0.53 -7.36 17.11 5.55 0.09 -7.26 16 26 C -0.12 -0.75 9.94 -26.73 -0.27 -1.02 16 27 C -0.13 -0.80 9.74 -26.73 -0.26 -1.06 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.73 7.75 -51.92 -0.40 0.33 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.40 3.53 8.47 -40.82 -0.35 3.18 16 36 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 37 H 0.09 1.62 8.14 -51.91 -0.42 1.19 16 38 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.40 2.25 8.61 -40.82 -0.35 1.90 16 40 H 0.41 3.33 7.88 -40.82 -0.32 3.01 16 41 H 0.41 3.35 8.93 -40.82 -0.36 2.99 16 42 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.12 0.81 7.68 -51.93 -0.40 0.42 16 45 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 402.78 15.07 6.07 6.07 Total: -1.00 -38.06 402.78 -7.93 -45.98 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -6.77 Total: 6.22 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -0.69 Total: 0.77 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: 0.43 Total: -46.90 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: 0.27 Total: -24.55 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -38.06 -7.93 -45.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075678200.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.196 kcal (2) G-P(sol) polarization free energy of solvation -38.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds