Wall clock time and date at job start Wed Apr 1 2020 01:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47001 * 2 1 4 4 C 1.53008 * 109.47084 * 119.99150 * 2 1 3 5 5 C 1.52997 * 109.46976 * 185.00067 * 4 2 1 6 6 N 1.46496 * 109.47162 * 179.97438 * 5 4 2 7 7 C 1.34767 * 120.00431 * 180.02562 * 6 5 4 8 8 O 1.21284 * 120.00076 * 0.02562 * 7 6 5 9 9 C 1.50707 * 120.00507 * 180.02562 * 7 6 5 10 10 S 1.80995 * 109.47296 * 179.97438 * 9 7 6 11 11 C 1.76199 * 99.99803 * 179.97438 * 10 9 7 12 12 H 1.07998 * 119.99916 * 0.02562 * 11 10 9 13 13 C 1.38803 * 119.99910 * 180.02562 * 11 10 9 14 14 N 1.31626 * 120.00023 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00011 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.46705 * 60.00089 * 15 13 11 17 17 H 1.48495 * 109.46877 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47036 * 300.00311 * 15 13 11 19 19 N 1.46498 * 109.47514 * 239.99528 * 2 1 3 20 20 C 1.34773 * 119.99841 * 84.99844 * 19 2 1 21 21 O 1.21276 * 120.00299 * 359.97438 * 20 19 2 22 22 C 1.50709 * 119.99660 * 180.02562 * 20 19 2 23 23 H 1.08997 * 115.54501 * 277.97781 * 22 20 19 24 24 C 1.52997 * 117.50009 * 63.65063 * 22 20 19 25 25 C 1.52991 * 59.99961 * 107.48743 * 24 22 20 26 26 H 1.09001 * 117.50122 * 107.48811 * 25 24 22 27 27 C 1.50706 * 117.50025 * 252.50967 * 25 24 22 28 28 N 1.34778 * 120.00215 * 158.16367 * 27 25 24 29 29 O 1.21282 * 119.99628 * 338.15442 * 27 25 24 30 30 H 1.08993 * 109.47503 * 300.00363 * 1 2 3 31 31 H 1.08998 * 109.47298 * 60.00757 * 1 2 3 32 32 H 1.09003 * 109.47154 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46998 * 65.00472 * 4 2 1 34 34 H 1.08999 * 109.47050 * 305.00652 * 4 2 1 35 35 H 1.09000 * 109.46926 * 60.00361 * 5 4 2 36 36 H 1.08995 * 109.47628 * 300.00678 * 5 4 2 37 37 H 0.97009 * 120.00077 * 0.02562 * 6 5 4 38 38 H 1.09000 * 109.47019 * 60.00037 * 9 7 6 39 39 H 1.08999 * 109.46767 * 300.00377 * 9 7 6 40 40 H 0.97003 * 120.00360 * 179.97438 * 14 13 11 41 41 H 0.97003 * 119.99673 * 264.99743 * 19 2 1 42 42 H 1.09003 * 117.49853 * 214.98169 * 24 22 20 43 43 H 1.09005 * 117.49766 * 359.97438 * 24 22 20 44 44 H 0.97001 * 119.99787 * 359.97438 * 28 27 25 45 45 H 0.96993 * 119.99832 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5648 -0.6131 1.3138 6 7 4.0531 -1.3030 2.5104 7 6 5.3738 -1.3382 2.7762 8 8 6.1582 -0.7983 2.0250 9 6 5.8762 -2.0484 4.0068 10 16 7.6800 -1.9205 4.0831 11 6 7.9869 -2.8089 5.5735 12 1 7.1633 -3.2318 6.1294 13 6 9.2873 -2.9653 6.0330 14 7 10.2912 -2.4495 5.3556 15 14 9.6128 -3.9078 7.6126 16 1 9.1126 -5.2988 7.4710 17 1 11.0727 -3.9313 7.8831 18 1 8.9116 -3.2419 8.7397 19 7 2.0184 -0.6907 -1.1961 20 6 2.1471 -0.0184 -2.3570 21 8 1.8582 1.1582 -2.4118 22 6 2.6490 -0.7291 -3.5876 23 1 3.7316 -0.8316 -3.6625 24 6 1.7914 -1.8665 -4.1457 25 6 1.8662 -0.5302 -4.8869 26 1 2.4337 -0.5017 -5.8171 27 6 0.6521 0.3614 -4.8383 28 7 0.7774 1.6836 -5.0680 29 8 -0.4376 -0.1109 -4.5927 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.7517 -1.7714 1.2059 34 1 1.6053 -0.2615 2.1370 35 1 3.8531 0.4372 1.3574 36 1 3.9995 -1.0726 0.4262 37 1 3.4257 -1.7345 3.1115 38 1 5.5884 -3.0988 3.9631 39 1 5.4411 -1.5891 4.8944 40 1 11.2000 -2.5584 5.6769 41 1 2.2492 -1.6318 -1.1523 42 1 2.3097 -2.7173 -4.5882 43 1 0.8642 -2.1011 -3.6227 44 1 1.6490 2.0613 -5.2642 45 1 -0.0039 2.2574 -5.0363 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075678364.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:05 Heat of formation + Delta-G solvation = -101.116899 kcal Electronic energy + Delta-G solvation = -26651.553423 eV Core-core repulsion = 22602.555699 eV Total energy + Delta-G solvation = -4048.997724 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.91107 -39.52083 -39.08337 -37.06374 -36.20903 -34.46637 -33.83472 -32.44611 -31.87007 -30.10262 -28.14970 -25.75687 -25.50113 -24.51239 -23.39380 -21.61477 -20.86510 -20.38304 -20.10176 -18.27437 -17.84094 -17.35325 -16.85397 -16.52630 -16.26461 -16.05944 -15.93803 -15.36380 -14.82131 -14.74730 -14.55868 -14.22326 -14.11565 -13.94262 -13.75553 -13.48991 -13.21341 -12.87557 -12.59479 -12.55129 -12.39172 -12.20317 -11.66773 -11.57209 -11.31261 -11.19464 -11.16757 -11.06374 -11.05239 -10.78278 -10.39193 -10.09985 -9.89416 -9.84457 -9.50609 -9.38485 -9.08140 -8.92573 -8.26206 -6.52153 -6.23190 -3.94100 2.14535 2.26284 2.67982 2.99736 3.05999 3.06981 3.22128 3.26149 3.27410 3.29320 3.66295 4.14481 4.18913 4.19409 4.25287 4.43537 4.53195 4.65980 4.71847 4.78522 5.04980 5.08391 5.11876 5.18056 5.21297 5.22048 5.29525 5.38064 5.49820 5.57827 5.60874 5.73120 5.86516 5.86962 5.91690 6.11162 6.15555 6.48728 6.56238 7.05328 7.12565 7.57482 7.66289 7.85930 7.97081 8.33256 8.57882 9.21928 10.84146 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.025420 B = 0.001679 C = 0.001631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.238842 B =16668.466282 C =17163.792048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 H 0.093 0.907 4 C -0.140 4.140 5 C 0.121 3.879 6 N -0.740 5.740 7 C 0.531 3.469 8 O -0.517 6.517 9 C -0.154 4.154 10 S -0.060 6.060 11 C -0.537 4.537 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 N -0.718 5.718 20 C 0.542 3.458 21 O -0.528 6.528 22 C -0.166 4.166 23 H 0.145 0.855 24 C -0.131 4.131 25 C -0.164 4.164 26 H 0.138 0.862 27 C 0.553 3.447 28 N -0.835 5.835 29 O -0.548 6.548 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.398 0.602 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.269 0.731 41 H 0.403 0.597 42 H 0.116 0.884 43 H 0.111 0.889 44 H 0.403 0.597 45 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.239 3.072 -18.441 28.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.111 0.889 4 C -0.178 4.178 5 C -0.003 4.003 6 N -0.395 5.395 7 C 0.317 3.683 8 O -0.391 6.391 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.685 4.685 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.199 1.199 19 N -0.369 5.369 20 C 0.328 3.672 21 O -0.404 6.404 22 C -0.187 4.187 23 H 0.163 0.837 24 C -0.168 4.168 25 C -0.186 4.186 26 H 0.156 0.844 27 C 0.337 3.663 28 N -0.396 5.396 29 O -0.426 6.426 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.232 0.768 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.237 0.763 42 H 0.134 0.866 43 H 0.129 0.871 44 H 0.231 0.769 45 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -20.543 4.408 -19.573 28.715 hybrid contribution -0.615 -1.420 2.084 2.596 sum -21.158 2.988 -17.489 27.613 Atomic orbital electron populations 1.22151 0.94672 1.02381 1.02792 1.20905 0.94213 0.97680 0.83031 0.88909 1.22133 0.95441 1.02004 0.98221 1.21250 0.92585 0.97991 0.88450 1.46004 1.07844 1.58623 1.27044 1.20324 0.81472 0.79701 0.86815 1.90708 1.54956 1.44345 1.49119 1.23534 1.06890 1.02540 0.97464 1.85399 0.92138 1.72769 1.33067 1.22827 0.95464 1.40273 1.09927 0.90969 1.24993 0.95040 0.95635 0.97897 1.70005 0.99421 1.42519 1.38327 0.86222 0.77380 0.79930 0.81956 1.19938 1.20798 1.19940 1.46030 1.67189 1.14228 1.09502 1.19568 0.77082 0.86840 0.83743 1.90723 1.49351 1.15570 1.84770 1.22358 1.00635 1.03763 0.91973 0.83699 1.23109 1.01608 0.91115 1.00998 1.22257 0.98629 1.00272 0.97442 0.84416 1.19410 0.88938 0.82828 0.75089 1.43576 1.13972 1.08425 1.73662 1.90739 1.27954 1.75073 1.48798 0.91423 0.91906 0.92308 0.90465 0.89378 0.91584 0.91628 0.76824 0.89231 0.89223 0.92112 0.76252 0.86561 0.87067 0.76852 0.76827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.48 37.16 0.35 -0.87 16 2 C 0.15 1.14 2.57 -67.93 -0.17 0.96 16 3 H 0.09 0.90 7.58 -51.93 -0.39 0.50 16 4 C -0.14 -0.94 4.87 -26.73 -0.13 -1.07 16 5 C 0.12 1.28 5.56 -4.05 -0.02 1.26 16 6 N -0.74 -9.12 5.55 -60.30 -0.33 -9.45 16 7 C 0.53 9.61 7.85 -10.99 -0.09 9.52 16 8 O -0.52 -11.58 15.86 5.55 0.09 -11.49 16 9 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 10 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 11 C -0.54 -15.15 9.50 30.94 0.29 -14.85 16 12 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 13 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 14 N -0.87 -25.99 13.22 55.49 0.73 -25.25 16 15 Si 0.92 21.20 29.55 -169.99 -5.02 16.18 16 16 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 19 N -0.72 -5.43 4.53 -53.80 -0.24 -5.67 16 20 C 0.54 5.06 6.86 -10.98 -0.08 4.98 16 21 O -0.53 -6.49 15.15 5.56 0.08 -6.41 16 22 C -0.17 -1.07 6.13 -91.77 -0.56 -1.63 16 23 H 0.15 0.68 8.14 -51.93 -0.42 0.26 16 24 C -0.13 -0.73 9.74 -26.74 -0.26 -1.00 16 25 C -0.16 -1.06 6.18 -91.78 -0.57 -1.63 16 26 H 0.14 0.51 8.14 -51.93 -0.42 0.09 16 27 C 0.55 5.27 6.07 -10.98 -0.07 5.20 16 28 N -0.84 -5.73 8.46 31.22 0.26 -5.46 16 29 O -0.55 -7.41 17.32 5.56 0.10 -7.32 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.74 7.75 -51.93 -0.40 0.34 16 37 H 0.40 3.64 8.47 -40.82 -0.35 3.30 16 38 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 39 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 40 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.40 2.27 8.60 -40.82 -0.35 1.92 16 42 H 0.12 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.11 0.80 7.84 -51.93 -0.41 0.39 16 44 H 0.40 1.86 8.83 -40.82 -0.36 1.50 16 45 H 0.40 2.52 8.93 -40.82 -0.36 2.15 16 LS Contribution 401.71 15.07 6.05 6.05 Total: -1.00 -39.48 401.71 -8.49 -47.97 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -6.82 Total: 4.62 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -1.17 Total: 0.07 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: 0.42 Total: -45.84 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: 0.27 Total: -25.21 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -39.48 -8.49 -47.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075678364.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.150 kcal (2) G-P(sol) polarization free energy of solvation -39.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds