Wall clock time and date at job start Wed Apr 1 2020 01:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.46725 * 2 1 4 4 C 1.53002 * 109.46905 * 119.99902 * 2 1 3 5 5 C 1.53004 * 109.46591 * 185.00080 * 4 2 1 6 6 N 1.46505 * 109.46776 * 179.97438 * 5 4 2 7 7 C 1.34780 * 119.99828 * 179.97438 * 6 5 4 8 8 O 1.21281 * 119.99887 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99896 * 179.97438 * 7 6 5 10 10 S 1.81004 * 109.47149 * 180.02562 * 9 7 6 11 11 C 1.76198 * 99.99957 * 180.02562 * 10 9 7 12 12 H 1.07996 * 119.99897 * 359.97438 * 11 10 9 13 13 C 1.38802 * 119.99971 * 180.02562 * 11 10 9 14 14 N 1.31622 * 120.00028 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 119.99707 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.47489 * 90.00180 * 15 13 11 17 17 H 1.48507 * 109.46921 * 210.00063 * 15 13 11 18 18 H 1.48498 * 109.47359 * 329.99869 * 15 13 11 19 19 N 1.46498 * 109.46852 * 239.99778 * 2 1 3 20 20 C 1.34780 * 119.99768 * 85.00286 * 19 2 1 21 21 O 1.21273 * 120.00177 * 359.97438 * 20 19 2 22 22 C 1.50704 * 119.99835 * 179.97438 * 20 19 2 23 23 H 1.09001 * 110.53750 * 61.15580 * 22 20 19 24 24 C 1.54625 * 110.48670 * 183.77174 * 22 20 19 25 25 C 1.54474 * 101.76763 * 143.47424 * 24 22 20 26 26 N 1.46761 * 105.47258 * 334.58255 * 25 24 22 27 27 C 1.34417 * 111.30293 * 17.01799 * 26 25 24 28 28 O 1.21278 * 124.94576 * 179.55979 * 27 26 25 29 29 H 1.09002 * 109.46797 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46818 * 299.99758 * 1 2 3 31 31 H 1.08994 * 109.46880 * 59.99984 * 1 2 3 32 32 H 1.08999 * 109.47037 * 304.99548 * 4 2 1 33 33 H 1.08999 * 109.47158 * 65.00174 * 4 2 1 34 34 H 1.08999 * 109.46995 * 299.99493 * 5 4 2 35 35 H 1.08999 * 109.47294 * 60.00176 * 5 4 2 36 36 H 0.96994 * 120.00189 * 0.02562 * 6 5 4 37 37 H 1.08996 * 109.47448 * 300.00694 * 9 7 6 38 38 H 1.08999 * 109.46834 * 60.00481 * 9 7 6 39 39 H 0.97001 * 120.00240 * 180.02562 * 14 13 11 40 40 H 0.96997 * 120.00205 * 264.99780 * 19 2 1 41 41 H 1.09001 * 110.96806 * 261.59550 * 24 22 20 42 42 H 1.09007 * 110.96934 * 25.35532 * 24 22 20 43 43 H 1.08998 * 110.24827 * 215.58069 * 25 24 22 44 44 H 1.09002 * 110.24269 * 93.58144 * 25 24 22 45 45 H 0.97007 * 124.34929 * 197.03291 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.6132 1.3137 6 7 4.0532 -1.3033 2.5102 7 6 5.3741 -1.3394 2.7754 8 8 6.1585 -0.8002 2.0238 9 6 5.8764 -2.0487 4.0065 10 16 7.6803 -1.9211 4.0827 11 6 7.9872 -2.8098 5.5729 12 1 7.1635 -3.2319 6.1293 13 6 9.2876 -2.9664 6.0322 14 7 9.5170 -3.6306 7.1452 15 14 10.7123 -2.2356 5.0701 16 1 10.9746 -0.8538 5.5468 17 1 11.9254 -3.0679 5.2732 18 1 10.3698 -2.2042 3.6255 19 7 2.0183 -0.6907 -1.1961 20 6 2.1471 -0.0183 -2.3571 21 8 1.8583 1.1583 -2.4117 22 6 2.6499 -0.7286 -3.5875 23 1 1.9784 -1.5427 -3.8603 24 6 2.8009 0.2652 -4.7624 25 6 4.0685 -0.2686 -5.4656 26 7 4.8250 -0.9755 -4.4255 27 6 4.0514 -1.2514 -3.3614 28 8 4.4227 -1.8351 -2.3652 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6054 -0.2617 2.1370 33 1 1.7517 -1.7715 1.2056 34 1 3.9995 -1.0728 0.4260 35 1 3.8532 0.4370 1.3573 36 1 3.4259 -1.7348 3.1111 37 1 5.4421 -1.5882 4.8938 38 1 5.5876 -3.0989 3.9639 39 1 10.4257 -3.7398 7.4664 40 1 2.2490 -1.6318 -1.1526 41 1 1.9376 0.2185 -5.4262 42 1 2.9558 1.2805 -4.3971 43 1 4.6563 0.5588 -5.8629 44 1 3.7946 -0.9561 -6.2659 45 1 5.7628 -1.2130 -4.4966 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075679038.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:10 Heat of formation + Delta-G solvation = -120.103817 kcal Electronic energy + Delta-G solvation = -27250.562973 eV Core-core repulsion = 23200.741914 eV Total energy + Delta-G solvation = -4049.821059 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.32402 -39.57092 -39.07496 -37.11897 -36.50645 -34.43700 -32.53152 -32.40610 -31.39890 -30.10122 -28.29625 -28.15654 -25.58389 -23.94079 -22.88636 -22.10013 -21.18772 -20.42950 -20.21382 -17.98811 -17.78906 -17.72071 -16.96323 -16.51704 -16.17052 -15.95180 -15.36296 -15.26837 -14.93063 -14.80579 -14.25899 -14.17528 -14.15478 -13.91019 -13.77066 -13.62370 -13.29634 -13.08548 -12.78405 -12.76388 -12.55006 -12.25603 -12.16046 -11.68786 -11.63296 -11.53396 -11.26178 -11.22065 -10.97649 -10.55918 -10.43652 -10.18101 -9.82384 -9.59300 -9.48952 -9.37591 -8.97733 -8.86619 -8.45072 -6.87379 -6.25862 -3.96875 1.92602 2.29064 2.74583 2.81876 2.99075 3.07646 3.34210 3.37523 3.54269 3.69696 3.73265 3.85012 4.26564 4.36558 4.43939 4.46686 4.52824 4.63691 4.76718 4.80262 4.82202 5.01509 5.08946 5.12586 5.13274 5.27755 5.33620 5.37771 5.41253 5.54990 5.59856 5.77355 5.82712 5.86993 5.99811 6.06390 6.17374 6.25927 6.52048 6.60875 7.14180 7.69422 7.74551 7.83873 7.97334 8.44722 8.59047 9.20589 10.83379 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.014489 B = 0.002269 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.991693 B =12338.810041 C =13875.131487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.092 0.908 4 C -0.139 4.139 5 C 0.119 3.881 6 N -0.737 5.737 7 C 0.529 3.471 8 O -0.517 6.517 9 C -0.123 4.123 10 S -0.142 6.142 11 C -0.520 4.520 12 H 0.088 0.912 13 C 0.095 3.905 14 N -0.881 5.881 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 N -0.712 5.712 20 C 0.535 3.465 21 O -0.534 6.534 22 C -0.153 4.153 23 H 0.136 0.864 24 C -0.117 4.117 25 C 0.098 3.902 26 N -0.728 5.728 27 C 0.525 3.475 28 O -0.510 6.510 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.398 0.602 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.270 0.730 40 H 0.408 0.592 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.705 5.611 -25.499 33.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.111 0.889 4 C -0.177 4.177 5 C -0.005 4.005 6 N -0.392 5.392 7 C 0.314 3.686 8 O -0.391 6.391 9 C -0.274 4.274 10 S 0.084 5.916 11 C -0.668 4.668 12 H 0.106 0.894 13 C -0.114 4.114 14 N -0.518 5.518 15 Si 0.681 3.319 16 H -0.192 1.192 17 H -0.200 1.200 18 H -0.159 1.159 19 N -0.364 5.364 20 C 0.319 3.681 21 O -0.411 6.411 22 C -0.177 4.177 23 H 0.153 0.847 24 C -0.155 4.155 25 C -0.026 4.026 26 N -0.385 5.385 27 C 0.309 3.691 28 O -0.384 6.384 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.232 0.768 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.080 0.920 40 H 0.244 0.756 41 H 0.115 0.885 42 H 0.120 0.880 43 H 0.103 0.897 44 H 0.094 0.906 45 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -20.387 7.012 -26.106 33.857 hybrid contribution 0.006 -1.292 0.913 1.582 sum -20.381 5.720 -25.193 32.905 Atomic orbital electron populations 1.22162 0.94632 1.02326 1.02840 1.20927 0.94159 0.97730 0.83209 0.88947 1.22117 0.95561 1.01988 0.98055 1.21309 0.92637 0.97857 0.88740 1.45926 1.07666 1.58503 1.27069 1.20268 0.81700 0.79851 0.86745 1.90711 1.54960 1.44455 1.49022 1.23273 1.02928 1.03263 0.97909 1.84811 0.98288 1.73846 1.34677 1.22327 0.97269 1.39489 1.07701 0.89399 1.24712 0.98303 0.93912 0.94424 1.69937 1.21680 1.39574 1.20599 0.86733 0.82123 0.79855 0.83144 1.19222 1.19969 1.15899 1.46085 1.66302 1.14773 1.09262 1.19714 0.77520 0.86886 0.83990 1.90711 1.50265 1.15411 1.84667 1.22193 0.97481 1.01530 0.96510 0.84674 1.22614 0.97991 1.00026 0.94909 1.22166 0.93049 0.96816 0.90584 1.46117 1.13985 1.59959 1.18389 1.20310 0.87101 0.78798 0.82875 1.90860 1.77615 1.41142 1.28829 0.92272 0.91292 0.91903 0.89419 0.90450 0.90739 0.91809 0.76813 0.88556 0.88506 0.91979 0.75600 0.88509 0.88033 0.89657 0.90603 0.74408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 9.48 37.16 0.35 -0.70 16 2 C 0.14 1.18 2.57 -67.93 -0.17 1.01 16 3 H 0.09 0.93 7.58 -51.93 -0.39 0.54 16 4 C -0.14 -1.07 4.87 -26.73 -0.13 -1.20 16 5 C 0.12 1.46 5.56 -4.04 -0.02 1.43 16 6 N -0.74 -9.96 5.56 -60.29 -0.33 -10.30 16 7 C 0.53 10.04 7.85 -10.98 -0.09 9.95 16 8 O -0.52 -12.07 15.86 5.56 0.09 -11.98 16 9 C -0.12 -2.48 6.16 36.01 0.22 -2.26 16 10 S -0.14 -3.75 18.55 -107.50 -1.99 -5.74 16 11 C -0.52 -15.31 10.04 30.94 0.31 -15.00 16 12 H 0.09 2.68 8.03 -52.49 -0.42 2.26 16 13 C 0.09 2.83 5.50 -17.43 -0.10 2.74 16 14 N -0.88 -26.98 13.97 55.49 0.78 -26.21 16 15 Si 0.86 22.29 27.74 -169.99 -4.71 17.57 16 16 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.24 -6.14 6.74 56.52 0.38 -5.76 16 19 N -0.71 -6.18 4.23 -53.80 -0.23 -6.40 16 20 C 0.53 5.14 7.13 -10.98 -0.08 5.07 16 21 O -0.53 -6.59 15.19 5.56 0.08 -6.51 16 22 C -0.15 -1.04 3.33 -91.78 -0.31 -1.35 16 23 H 0.14 0.56 8.14 -51.93 -0.42 0.14 16 24 C -0.12 -0.57 6.45 -25.10 -0.16 -0.73 16 25 C 0.10 0.36 7.78 -3.13 -0.02 0.33 16 26 N -0.73 -4.94 6.24 -59.21 -0.37 -5.30 16 27 C 0.53 5.04 7.84 -10.86 -0.09 4.95 16 28 O -0.51 -7.05 16.85 5.56 0.09 -6.96 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 1.09 7.75 -51.93 -0.40 0.69 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.40 4.02 8.47 -40.82 -0.35 3.68 16 37 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 38 H 0.10 1.81 8.14 -51.92 -0.42 1.39 16 39 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 40 H 0.41 3.33 7.81 -40.82 -0.32 3.01 16 41 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.10 0.69 7.06 -51.93 -0.37 0.33 16 43 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 44 H 0.08 0.14 8.14 -51.93 -0.42 -0.29 16 45 H 0.42 2.53 8.96 -40.82 -0.37 2.16 16 LS Contribution 391.37 15.07 5.90 5.90 Total: -1.00 -39.68 391.37 -7.82 -47.51 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -6.84 Total: 4.18 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -0.28 Total: 4.24 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: -0.16 Total: -48.21 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: 0.27 Total: -25.44 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.71 Total: 17.57 kcal Atomic # 16 Polarization: -3.75 SS G_CDS: -1.99 Total: -5.74 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -39.68 -7.82 -47.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075679038.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.596 kcal (2) G-P(sol) polarization free energy of solvation -39.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds