Wall clock time and date at job start Wed Apr 1 2020 01:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 C 1.53006 * 109.46654 * 184.99930 * 4 2 1 6 6 N 1.46505 * 109.46975 * 180.02562 * 5 4 2 7 7 C 1.34773 * 119.99859 * 180.02562 * 6 5 4 8 8 O 1.21285 * 119.99944 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.00119 * 179.97438 * 7 6 5 10 10 S 1.81001 * 109.47404 * 179.97438 * 9 7 6 11 11 C 1.76200 * 99.99975 * 179.97438 * 10 9 7 12 12 H 1.08000 * 119.99994 * 0.02562 * 11 10 9 13 13 C 1.38793 * 119.99910 * 179.97438 * 11 10 9 14 14 N 1.31633 * 120.00171 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00041 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47287 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47157 * 120.00329 * 15 13 11 18 18 H 1.48501 * 109.47251 * 240.00319 * 15 13 11 19 19 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 20 20 C 1.34777 * 119.99525 * 84.99977 * 19 2 1 21 21 O 1.21283 * 120.00463 * 0.02562 * 20 19 2 22 22 C 1.50700 * 119.99675 * 179.72583 * 20 19 2 23 23 H 1.09004 * 110.43357 * 302.81750 * 22 20 19 24 24 C 1.54629 * 110.48588 * 180.27739 * 22 20 19 25 25 C 1.54474 * 101.76515 * 216.52197 * 24 22 20 26 26 N 1.46758 * 105.47591 * 25.41505 * 25 24 22 27 27 C 1.34426 * 111.29802 * 342.98629 * 26 25 24 28 28 O 1.21285 * 124.94003 * 180.43891 * 27 26 25 29 29 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 30 30 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 32 32 H 1.09000 * 109.47404 * 304.99977 * 4 2 1 33 33 H 1.09001 * 109.47466 * 65.00446 * 4 2 1 34 34 H 1.09000 * 109.47254 * 300.00139 * 5 4 2 35 35 H 1.09001 * 109.46763 * 60.00085 * 5 4 2 36 36 H 0.97001 * 119.99746 * 359.97438 * 6 5 4 37 37 H 1.09000 * 109.46994 * 299.99970 * 9 7 6 38 38 H 1.09006 * 109.46984 * 59.99729 * 9 7 6 39 39 H 0.96996 * 120.00279 * 179.97438 * 14 13 11 40 40 H 0.97000 * 120.00580 * 265.00723 * 19 2 1 41 41 H 1.08998 * 110.97481 * 334.64624 * 24 22 20 42 42 H 1.09003 * 110.97100 * 98.37058 * 24 22 20 43 43 H 1.08995 * 110.24750 * 144.41842 * 25 24 22 44 44 H 1.09000 * 110.25113 * 266.41204 * 25 24 22 45 45 H 0.96999 * 124.35475 * 162.97859 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5648 -0.6132 1.3138 6 7 4.0531 -1.3042 2.5098 7 6 5.3739 -1.3396 2.7755 8 8 6.1583 -0.7998 2.0242 9 6 5.8763 -2.0499 4.0060 10 16 7.6802 -1.9224 4.0822 11 6 7.9870 -2.8109 5.5726 12 1 7.1633 -3.2336 6.1286 13 6 9.2874 -2.9684 6.0314 14 7 10.2915 -2.4536 5.3534 15 14 9.6128 -3.9109 7.6110 16 1 8.3252 -4.3857 8.1784 17 1 10.4852 -5.0771 7.3208 18 1 10.2868 -3.0199 8.5893 19 7 2.0185 -0.6908 -1.1960 20 6 2.1472 -0.0185 -2.3570 21 8 1.8591 1.1584 -2.4116 22 6 2.6554 -0.7275 -3.5859 23 1 3.6354 -1.1650 -3.3949 24 6 2.7222 0.2473 -4.7844 25 6 2.3095 -0.6681 -5.9582 26 7 1.4956 -1.7317 -5.3581 27 6 1.6745 -1.7913 -4.0271 28 8 1.1293 -2.5831 -3.2877 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8898 32 1 1.6053 -0.2615 2.1370 33 1 1.7516 -1.7714 1.2059 34 1 3.9995 -1.0728 0.4262 35 1 3.8531 0.4371 1.3574 36 1 3.4257 -1.7356 3.1109 37 1 5.4414 -1.5905 4.8937 38 1 5.5881 -3.1003 3.9623 39 1 11.2002 -2.5633 5.6743 40 1 2.2491 -1.6319 -1.1524 41 1 2.0140 1.0665 -4.6609 42 1 3.7346 0.6270 -4.9224 43 1 1.7214 -0.1077 -6.6849 44 1 3.1933 -1.0927 -6.4344 45 1 0.9045 -2.3165 -5.8575 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075679039.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:13 Heat of formation + Delta-G solvation = -121.427944 kcal Electronic energy + Delta-G solvation = -26816.989603 eV Core-core repulsion = 22767.111126 eV Total energy + Delta-G solvation = -4049.878477 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.34725 -39.58681 -39.05570 -37.12699 -36.54372 -34.42067 -32.52976 -32.42818 -31.40410 -30.04892 -28.31787 -28.10284 -25.49503 -23.91194 -22.89861 -22.14280 -21.19434 -20.40177 -20.18558 -18.03374 -17.84545 -17.74886 -16.84433 -16.63796 -16.18345 -15.92319 -15.39686 -15.12201 -14.93248 -14.80527 -14.33180 -14.21132 -14.12866 -13.96505 -13.81093 -13.56843 -13.17998 -13.16002 -12.81700 -12.60424 -12.47711 -12.20601 -12.12610 -11.67614 -11.61103 -11.50535 -11.22423 -11.07037 -11.01946 -10.75424 -10.48969 -10.19521 -9.80691 -9.68582 -9.46020 -9.33876 -9.07900 -8.88308 -8.23102 -6.49964 -6.21878 -3.92309 1.89018 2.25420 2.71908 2.96513 3.02915 3.10394 3.21524 3.28163 3.32810 3.69784 3.73983 3.84249 4.20282 4.27889 4.42804 4.48383 4.57187 4.66578 4.78307 4.82677 4.99374 5.09577 5.13207 5.13795 5.24529 5.33413 5.35374 5.41743 5.56015 5.61315 5.64469 5.77489 5.89959 5.90265 5.95888 6.14157 6.15912 6.21029 6.39842 6.60456 7.16957 7.59877 7.64789 7.70522 7.86090 8.35424 8.61592 9.23607 10.85612 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.018582 B = 0.001809 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.470435 B =15475.739478 C =16117.860352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 H 0.094 0.906 4 C -0.140 4.140 5 C 0.121 3.879 6 N -0.740 5.740 7 C 0.531 3.469 8 O -0.518 6.518 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 N -0.712 5.712 20 C 0.536 3.464 21 O -0.534 6.534 22 C -0.154 4.154 23 H 0.139 0.861 24 C -0.118 4.118 25 C 0.098 3.902 26 N -0.728 5.728 27 C 0.531 3.469 28 O -0.520 6.520 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.398 0.602 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.268 0.732 40 H 0.407 0.593 41 H 0.102 0.898 42 H 0.099 0.901 43 H 0.085 0.915 44 H 0.077 0.923 45 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.887 3.268 -20.815 30.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.112 0.888 4 C -0.179 4.179 5 C -0.003 4.003 6 N -0.395 5.395 7 C 0.317 3.683 8 O -0.392 6.392 9 C -0.304 4.304 10 S 0.165 5.835 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.137 4.137 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 N -0.363 5.363 20 C 0.320 3.680 21 O -0.410 6.410 22 C -0.179 4.179 23 H 0.156 0.844 24 C -0.156 4.156 25 C -0.026 4.026 26 N -0.384 5.384 27 C 0.315 3.685 28 O -0.396 6.396 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.232 0.768 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.243 0.757 41 H 0.120 0.880 42 H 0.117 0.883 43 H 0.103 0.897 44 H 0.096 0.904 45 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -20.794 4.711 -21.655 30.390 hybrid contribution -1.033 -2.215 1.871 3.078 sum -21.827 2.496 -19.784 29.564 Atomic orbital electron populations 1.22149 0.94735 1.02477 1.02596 1.20924 0.94293 0.97606 0.83089 0.88799 1.22134 0.95418 1.02144 0.98155 1.21260 0.92633 0.97955 0.88451 1.46001 1.07831 1.58560 1.27077 1.20316 0.81482 0.79703 0.86810 1.90704 1.54960 1.44392 1.49117 1.23532 1.06830 1.02562 0.97484 1.85400 0.92205 1.72747 1.33108 1.22910 0.95486 1.40051 1.09844 0.90866 1.25000 0.95062 0.95673 0.97921 1.70028 0.99343 1.42676 1.38244 0.86110 0.78398 0.79257 0.81685 1.19620 1.20578 1.20564 1.46056 1.66527 1.14458 1.09289 1.19679 0.77511 0.86870 0.83932 1.90711 1.50138 1.15581 1.84616 1.22202 1.01920 0.97772 0.95983 0.84381 1.22631 1.05136 0.97470 0.90410 1.22188 0.95553 0.88455 0.96412 1.46115 1.46661 1.37295 1.08294 1.20299 0.81525 0.83879 0.82778 1.90798 1.51064 1.40573 1.57118 0.92087 0.92158 0.91405 0.89337 0.90382 0.91683 0.91507 0.76814 0.89214 0.89227 0.92240 0.75702 0.87981 0.88263 0.89669 0.90433 0.74671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.48 37.16 0.35 -0.93 16 2 C 0.15 1.24 2.57 -67.93 -0.17 1.07 16 3 H 0.09 0.93 7.58 -51.93 -0.39 0.54 16 4 C -0.14 -1.06 4.87 -26.73 -0.13 -1.19 16 5 C 0.12 1.36 5.56 -4.04 -0.02 1.34 16 6 N -0.74 -9.57 5.56 -60.29 -0.33 -9.90 16 7 C 0.53 9.87 7.85 -10.99 -0.09 9.78 16 8 O -0.52 -11.79 15.86 5.55 0.09 -11.70 16 9 C -0.15 -3.08 6.16 36.00 0.22 -2.86 16 10 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 11 C -0.53 -15.25 9.50 30.94 0.29 -14.96 16 12 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 13 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 14 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 15 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 16 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 N -0.71 -6.42 4.27 -53.80 -0.23 -6.65 16 20 C 0.54 5.36 7.08 -10.98 -0.08 5.28 16 21 O -0.53 -6.78 15.15 5.55 0.08 -6.69 16 22 C -0.15 -1.11 3.32 -91.79 -0.31 -1.42 16 23 H 0.14 0.78 8.14 -51.93 -0.42 0.36 16 24 C -0.12 -0.60 6.48 -25.10 -0.16 -0.76 16 25 C 0.10 0.30 7.78 -3.13 -0.02 0.28 16 26 N -0.73 -3.85 6.24 -59.21 -0.37 -4.22 16 27 C 0.53 4.47 7.85 -10.86 -0.09 4.38 16 28 O -0.52 -6.11 17.18 5.55 0.10 -6.01 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.79 7.75 -51.93 -0.40 0.39 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.40 3.90 8.47 -40.82 -0.35 3.55 16 37 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 38 H 0.09 1.66 8.14 -51.91 -0.42 1.23 16 39 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.41 3.42 8.14 -40.82 -0.33 3.09 16 41 H 0.10 0.68 7.00 -51.93 -0.36 0.32 16 42 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.08 0.14 8.14 -51.93 -0.42 -0.29 16 44 H 0.08 0.14 8.14 -51.93 -0.42 -0.29 16 45 H 0.41 1.60 8.96 -40.82 -0.37 1.23 16 LS Contribution 394.65 15.07 5.95 5.95 Total: -1.00 -38.69 394.65 -8.34 -47.03 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -6.82 Total: 3.15 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -0.30 Total: 1.99 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: -0.20 Total: -46.23 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: 0.27 Total: -24.41 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -38.69 -8.34 -47.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075679039.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.397 kcal (2) G-P(sol) polarization free energy of solvation -38.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds