Wall clock time and date at job start Wed Apr 1 2020 01:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46925 * 2 1 4 4 C 1.52995 * 109.47023 * 119.99562 * 2 1 3 5 5 C 1.52999 * 109.47075 * 185.00349 * 4 2 1 6 6 N 1.46506 * 109.47151 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99713 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00534 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99435 * 180.02562 * 7 6 5 10 10 H 1.08997 * 110.21998 * 320.47549 * 9 7 6 11 11 C 1.54483 * 110.24432 * 82.50042 * 9 7 6 12 12 C 1.54630 * 101.76357 * 144.41550 * 11 9 7 13 13 C 1.51288 * 104.19514 * 335.19637 * 12 11 9 14 14 O 1.21277 * 124.93857 * 196.27410 * 13 12 11 15 15 N 1.34421 * 110.11490 * 16.25609 * 13 12 11 16 16 N 1.46499 * 109.47070 * 239.99877 * 2 1 3 17 17 C 1.34777 * 120.00199 * 85.00207 * 16 2 1 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 16 2 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 16 2 20 20 S 1.80999 * 109.46903 * 179.72354 * 19 17 16 21 21 C 1.76200 * 99.99730 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00351 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00095 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99941 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00384 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46990 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47522 * 119.99735 * 25 23 21 28 28 H 1.48500 * 109.47073 * 240.00101 * 25 23 21 29 29 H 1.09005 * 109.47473 * 60.00296 * 1 2 3 30 30 H 1.08998 * 109.46925 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47598 * 300.00405 * 1 2 3 32 32 H 1.09000 * 109.47218 * 305.00067 * 4 2 1 33 33 H 1.09000 * 109.47293 * 65.00233 * 4 2 1 34 34 H 1.09000 * 109.46867 * 299.99933 * 5 4 2 35 35 H 1.09000 * 109.47154 * 59.99799 * 5 4 2 36 36 H 0.97002 * 119.99797 * 359.97438 * 6 5 4 37 37 H 1.08997 * 110.96784 * 262.52962 * 11 9 7 38 38 H 1.08993 * 110.97260 * 26.29662 * 11 9 7 39 39 H 1.09008 * 110.48513 * 216.52281 * 12 11 9 40 40 H 1.08998 * 110.60219 * 93.93326 * 12 11 9 41 41 H 0.96994 * 124.34820 * 180.42214 * 15 13 12 42 42 H 0.97000 * 119.99484 * 264.99304 * 16 2 1 43 43 H 1.09004 * 109.46965 * 299.72211 * 19 17 16 44 44 H 1.08994 * 109.46990 * 59.72065 * 19 17 16 45 45 H 0.97002 * 120.00288 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3138 6 7 4.0531 -1.3031 2.5103 7 6 5.3740 -1.3391 2.7756 8 8 6.1585 -0.8008 2.0235 9 6 5.8763 -2.0494 4.0061 10 1 5.2075 -1.8651 4.8468 11 6 5.9944 -3.5661 3.7371 12 6 7.2509 -3.9351 4.5594 13 6 8.0278 -2.6403 4.6511 14 8 9.1954 -2.5517 4.9669 15 7 7.2359 -1.6023 4.3311 16 7 2.0183 -0.6906 -1.1961 17 6 2.1471 -0.0183 -2.3571 18 8 1.8582 1.1583 -2.4117 19 6 2.6435 -0.7303 -3.5891 20 16 2.6982 0.4311 -4.9762 21 6 3.2960 -0.6356 -6.2449 22 1 3.5060 -1.6719 -6.0247 23 6 3.4959 -0.1445 -7.5276 24 7 3.2385 1.1182 -7.7964 25 14 4.1289 -1.2754 -8.8728 26 1 4.3383 -2.6366 -8.3172 27 1 3.1360 -1.3377 -9.9752 28 1 5.4163 -0.7511 -9.3952 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6053 -0.2616 2.1370 33 1 1.7516 -1.7714 1.2057 34 1 3.9994 -1.0727 0.4261 35 1 3.8531 0.4372 1.3573 36 1 3.4256 -1.7340 3.1117 37 1 5.1170 -4.0971 4.1060 38 1 6.1505 -3.7632 2.6766 39 1 7.8360 -4.6953 4.0416 40 1 6.9701 -4.2828 5.5536 41 1 7.5258 -0.6768 4.3167 42 1 2.2491 -1.6318 -1.1525 43 1 3.6436 -1.1225 -3.4039 44 1 1.9697 -1.5525 -3.8299 45 1 3.3785 1.4616 -8.6927 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075926949.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:15 Heat of formation + Delta-G solvation = -119.927632 kcal Electronic energy + Delta-G solvation = -26546.494208 eV Core-core repulsion = 22496.680790 eV Total energy + Delta-G solvation = -4049.813419 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.27801 -39.73975 -39.31051 -36.93772 -36.44456 -34.84577 -32.43174 -32.03056 -31.80663 -30.11679 -28.61253 -28.17508 -25.49101 -24.20023 -22.89410 -21.72713 -21.10391 -20.84333 -20.38801 -18.37192 -17.86451 -17.76001 -16.66387 -16.50266 -16.34802 -15.97878 -15.63946 -15.20590 -14.90621 -14.80804 -14.51286 -14.24171 -14.13810 -13.85876 -13.82467 -13.59326 -13.28484 -13.26989 -12.97133 -12.68073 -12.55426 -12.21583 -11.99458 -11.86951 -11.76632 -11.62137 -11.16459 -11.06997 -11.02194 -10.75778 -10.56471 -10.34395 -9.81022 -9.62623 -9.57493 -9.42082 -9.08327 -8.96750 -8.23974 -6.50319 -6.22113 -3.92557 2.00835 2.07497 2.45012 2.95087 3.00462 3.06326 3.21586 3.27980 3.32360 3.68139 3.71465 3.74581 4.03251 4.20009 4.26660 4.33940 4.39805 4.56796 4.63760 4.73787 5.02273 5.11516 5.13007 5.13730 5.15232 5.23662 5.25883 5.28243 5.46912 5.53860 5.61074 5.65056 5.87196 5.88712 5.94154 6.10828 6.13220 6.20613 6.50644 6.59910 6.91568 7.59537 7.64187 7.65883 7.77098 8.35085 8.58037 9.23463 10.85358 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011258 B = 0.002006 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.462721 B =13953.006933 C =15770.238178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.146 3.854 3 H 0.091 0.909 4 C -0.137 4.137 5 C 0.115 3.885 6 N -0.725 5.725 7 C 0.501 3.499 8 O -0.519 6.519 9 C 0.115 3.885 10 H 0.106 0.894 11 C -0.122 4.122 12 C -0.155 4.155 13 C 0.523 3.477 14 O -0.528 6.528 15 N -0.711 5.711 16 N -0.736 5.736 17 C 0.534 3.466 18 O -0.516 6.516 19 C -0.154 4.154 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.401 0.599 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.417 0.583 42 H 0.397 0.603 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.279 -11.776 29.302 31.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.109 0.891 4 C -0.175 4.175 5 C -0.008 4.008 6 N -0.378 5.378 7 C 0.284 3.716 8 O -0.393 6.393 9 C 0.005 3.995 10 H 0.124 0.876 11 C -0.160 4.160 12 C -0.195 4.195 13 C 0.309 3.691 14 O -0.404 6.404 15 N -0.367 5.367 16 N -0.391 5.391 17 C 0.320 3.680 18 O -0.390 6.390 19 C -0.305 4.305 20 S 0.166 5.834 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.236 0.764 37 H 0.120 0.880 38 H 0.109 0.891 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.256 0.744 42 H 0.231 0.769 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.586 -9.320 28.685 30.272 hybrid contribution 0.481 -2.265 -0.609 2.394 sum -2.105 -11.585 28.077 30.446 Atomic orbital electron populations 1.22173 0.94955 1.02119 1.02882 1.20772 0.94212 0.97757 0.83198 0.89071 1.22105 0.94316 1.02153 0.98929 1.21479 0.93798 0.98122 0.87406 1.45965 1.07125 1.57215 1.27476 1.20710 0.82683 0.80844 0.87348 1.90821 1.55156 1.44545 1.48818 1.21597 0.85983 0.95767 0.96179 0.87604 1.22626 0.99368 0.91507 1.02495 1.22378 0.96871 0.97100 1.03170 1.20840 0.86058 0.86835 0.75398 1.90789 1.15233 1.86311 1.48066 1.45964 1.10559 1.10569 1.69633 1.46129 1.69572 1.13841 1.09597 1.20307 0.76685 0.87228 0.83771 1.90703 1.48090 1.15765 1.84401 1.23537 1.03696 1.04851 0.98407 1.85396 1.86455 1.12972 0.98551 1.22901 1.51050 0.98154 0.96177 0.90896 1.24999 0.95092 0.95560 0.97995 1.70028 1.45592 1.13273 1.21380 0.86113 0.78524 0.80130 0.80703 1.19631 1.20571 1.20551 0.91402 0.92512 0.91862 0.89672 0.90514 0.90647 0.90896 0.76441 0.87953 0.89125 0.87384 0.87209 0.74354 0.76945 0.89261 0.89264 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.48 37.16 0.35 -1.10 16 2 C 0.15 1.37 2.57 -67.93 -0.17 1.20 16 3 H 0.09 1.07 7.58 -51.93 -0.39 0.68 16 4 C -0.14 -0.70 4.87 -26.73 -0.13 -0.83 16 5 C 0.12 0.84 5.56 -4.04 -0.02 0.81 16 6 N -0.72 -3.51 5.56 -60.29 -0.33 -3.84 16 7 C 0.50 3.74 7.01 -10.98 -0.08 3.66 16 8 O -0.52 -6.78 16.58 5.56 0.09 -6.69 16 9 C 0.11 0.50 3.92 -68.16 -0.27 0.23 16 10 H 0.11 0.11 8.14 -51.93 -0.42 -0.31 16 11 C -0.12 -0.33 6.68 -25.10 -0.17 -0.50 16 12 C -0.15 -0.66 6.86 -26.74 -0.18 -0.84 16 13 C 0.52 4.67 8.43 -10.86 -0.09 4.58 16 14 O -0.53 -7.21 18.03 5.56 0.10 -7.11 16 15 N -0.71 -5.27 5.47 -53.87 -0.29 -5.56 16 16 N -0.74 -8.58 4.53 -53.81 -0.24 -8.82 16 17 C 0.53 9.43 7.81 -10.98 -0.09 9.34 16 18 O -0.52 -11.23 15.53 5.55 0.09 -11.15 16 19 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 20 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 21 C -0.53 -15.23 9.50 30.94 0.29 -14.93 16 22 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 23 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 24 N -0.87 -26.22 13.22 55.49 0.73 -25.48 16 25 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.08 0.71 7.75 -51.93 -0.40 0.30 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.40 0.45 8.47 -40.82 -0.35 0.10 16 37 H 0.10 -0.05 8.14 -51.93 -0.42 -0.47 16 38 H 0.09 0.37 7.90 -51.93 -0.41 -0.04 16 39 H 0.11 0.44 8.14 -51.92 -0.42 0.02 16 40 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.42 3.29 8.96 -40.82 -0.37 2.93 16 42 H 0.40 3.51 8.60 -40.82 -0.35 3.16 16 43 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 44 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 45 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 397.80 15.07 5.99 5.99 Total: -1.00 -40.93 397.80 -8.42 -49.35 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -6.89 Total: -0.10 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -0.43 Total: 0.78 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: -0.14 Total: -43.71 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: 0.28 Total: -24.94 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -40.93 -8.42 -49.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075926949.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.577 kcal (2) G-P(sol) polarization free energy of solvation -40.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds