Wall clock time and date at job start Wed Apr 1 2020 02:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.47067 * 126.30784 * 2 1 4 4 C 1.54060 * 110.10904 * 209.06330 * 3 2 1 5 5 C 1.55605 * 104.29676 * 314.79760 * 4 3 2 6 6 H 1.09001 * 111.16148 * 280.00695 * 5 4 3 7 7 C 1.50698 * 111.16688 * 155.78684 * 5 4 3 8 8 O 1.21280 * 120.00014 * 329.99402 * 7 5 4 9 9 N 1.34774 * 120.00030 * 149.99979 * 7 5 4 10 10 C 1.47351 * 125.52907 * 0.03999 * 9 7 5 11 11 C 1.56793 * 105.02925 * 156.46853 * 10 9 7 12 12 C 1.54798 * 100.67106 * 37.17812 * 11 10 9 13 13 H 1.09002 * 112.64305 * 85.70041 * 12 11 10 14 14 C 1.53261 * 109.74570 * 211.98790 * 12 11 10 15 15 N 1.46590 * 108.16032 * 96.44492 * 14 12 11 16 16 C 1.36930 * 125.30674 * 177.86178 * 15 14 12 17 17 H 1.08008 * 120.00320 * 0.02562 * 16 15 14 18 18 C 1.38814 * 120.00086 * 180.02562 * 16 15 14 19 19 N 1.31612 * 119.99858 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99978 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47447 * 59.99799 * 20 18 16 22 22 H 1.48505 * 109.47033 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47158 * 299.99484 * 20 18 16 24 24 C 1.46606 * 109.38518 * 357.88612 * 15 14 12 25 25 C 1.47217 * 125.52959 * 179.97438 * 9 7 5 26 26 H 1.08998 * 112.72345 * 56.00790 * 25 9 7 27 27 S 1.67010 * 126.29901 * 180.02562 * 2 1 3 28 28 O 1.42097 * 105.13281 * 61.03324 * 27 2 1 29 29 O 1.42105 * 105.13015 * 291.36497 * 27 2 1 30 30 H 1.09008 * 109.46606 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.47340 * 119.97780 * 1 2 3 32 32 H 1.09000 * 109.47503 * 239.98111 * 1 2 3 33 33 H 1.08992 * 109.35631 * 88.88000 * 3 2 1 34 34 H 1.08999 * 109.35114 * 329.23909 * 3 2 1 35 35 H 1.08997 * 110.47082 * 196.09244 * 4 3 2 36 36 H 1.09005 * 110.47045 * 73.49979 * 4 3 2 37 37 H 1.08999 * 110.35119 * 275.35494 * 10 9 7 38 38 H 1.08991 * 110.35735 * 37.54430 * 10 9 7 39 39 H 1.09001 * 111.09666 * 279.53429 * 11 10 9 40 40 H 1.09004 * 111.71586 * 155.07449 * 11 10 9 41 41 H 1.09007 * 109.73777 * 216.12763 * 14 12 11 42 42 H 1.09002 * 109.74328 * 336.75657 * 14 12 11 43 43 H 0.97006 * 120.00373 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.91541 * 137.17133 * 24 15 14 45 45 H 1.09005 * 109.91083 * 258.25771 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.3358 1.1851 0.0000 4 6 3.6684 0.8632 -0.7028 5 6 4.0862 -0.5179 -0.1202 6 1 4.5453 -0.4079 0.8622 7 6 5.0014 -1.2528 -1.0654 8 8 4.9053 -1.0775 -2.2616 9 7 5.9266 -2.1049 -0.5814 10 6 6.1482 -2.4095 0.8431 11 6 6.8324 -3.8202 0.8556 12 6 7.7371 -3.7111 -0.3957 13 1 8.6991 -3.2466 -0.1789 14 6 7.8831 -5.0890 -1.0508 15 7 6.9053 -5.1835 -2.1389 16 6 6.7618 -6.2519 -2.9833 17 1 7.4000 -7.1163 -2.8738 18 6 5.7961 -6.2239 -3.9800 19 7 5.0181 -5.1707 -4.1131 20 14 5.5999 -7.6816 -5.1315 21 1 5.2659 -8.8944 -4.3423 22 1 4.5076 -7.4048 -6.0988 23 1 6.8696 -7.9047 -5.8685 24 6 6.1055 -3.9556 -2.1824 25 6 6.8788 -2.8835 -1.3903 26 1 7.4870 -2.2575 -2.0432 27 16 2.4536 -1.3460 -0.0006 28 8 2.1379 -2.0377 -1.2010 29 8 2.2705 -1.9414 1.2767 30 1 -0.3633 1.0278 0.0005 31 1 -0.3634 -0.5135 -0.8902 32 1 -0.3634 -0.5141 0.8898 33 1 2.5335 1.4881 1.0281 34 1 1.8375 1.9995 -0.5260 35 1 4.4169 1.6192 -0.4654 36 1 3.5238 0.7941 -1.7810 37 1 6.8065 -1.6656 1.2918 38 1 5.1980 -2.4444 1.3757 39 1 6.0956 -4.6147 0.7374 40 1 7.4275 -3.9719 1.7562 41 1 8.8909 -5.2015 -1.4508 42 1 7.6907 -5.8691 -0.3142 43 1 4.3430 -5.1513 -4.8094 44 1 5.9763 -3.6331 -3.2155 45 1 5.1322 -4.1302 -1.7237 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076349948.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:09 Heat of formation + Delta-G solvation = -40.905195 kcal Electronic energy + Delta-G solvation = -30093.886061 eV Core-core repulsion = 26047.499313 eV Total energy + Delta-G solvation = -4046.386749 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.25822 -38.34804 -37.15544 -37.04590 -35.92960 -34.98831 -33.26428 -32.25929 -30.65984 -29.06796 -27.86177 -26.61142 -25.65978 -24.46940 -23.12118 -22.27965 -20.53484 -19.94068 -19.16945 -18.61846 -17.76898 -17.22996 -16.96365 -16.61421 -15.87071 -15.70637 -15.26479 -14.93936 -14.62912 -14.46849 -14.08061 -13.73238 -13.54803 -13.44095 -13.36252 -13.05262 -12.88239 -12.69254 -12.26867 -12.13680 -12.08436 -11.98988 -11.95942 -11.69698 -11.58737 -11.31855 -11.23330 -11.00911 -10.72922 -10.69905 -10.44125 -10.19898 -10.03972 -9.79527 -9.72650 -9.64206 -9.26404 -8.53362 -8.34395 -6.76851 -5.55001 -2.98486 -0.07222 2.30862 2.74823 2.92070 3.47560 3.48421 3.50957 3.54430 3.60791 4.06680 4.20316 4.47778 4.56373 4.64458 4.66718 4.77694 4.87155 4.99709 5.14396 5.22901 5.28202 5.37338 5.41591 5.46080 5.51873 5.58817 5.59895 5.62967 5.68495 5.79282 5.90128 5.99517 6.17430 6.27423 6.29436 6.48065 6.51592 6.66891 6.86266 7.48984 7.67370 7.78102 7.99388 8.25387 8.44956 9.30534 9.91560 10.53038 11.49306 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.013872 B = 0.004129 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.955368 B = 6780.260322 C = 7842.939770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.999 5.999 3 C 0.082 3.918 4 C -0.110 4.110 5 C -0.597 4.597 6 H 0.160 0.840 7 C 0.548 3.452 8 O -0.494 6.494 9 N -0.603 5.603 10 C 0.088 3.912 11 C -0.122 4.122 12 C -0.110 4.110 13 H 0.089 0.911 14 C 0.144 3.856 15 N -0.601 5.601 16 C -0.238 4.238 17 H 0.078 0.922 18 C -0.005 4.005 19 N -0.911 5.911 20 Si 0.913 3.087 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.161 3.839 25 C 0.114 3.886 26 H 0.088 0.912 27 S 2.585 3.415 28 O -0.917 6.917 29 O -0.948 6.948 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.024 0.976 42 H 0.026 0.974 43 H 0.256 0.744 44 H 0.099 0.901 45 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.634 16.360 14.318 21.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.843 5.843 3 C -0.044 4.044 4 C -0.149 4.149 5 C -0.707 4.707 6 H 0.178 0.822 7 C 0.332 3.668 8 O -0.367 6.367 9 N -0.338 5.338 10 C -0.035 4.035 11 C -0.160 4.160 12 C -0.129 4.129 13 H 0.107 0.893 14 C 0.018 3.982 15 N -0.328 5.328 16 C -0.366 4.366 17 H 0.096 0.904 18 C -0.202 4.202 19 N -0.558 5.558 20 Si 0.743 3.257 21 H -0.212 1.212 22 H -0.215 1.215 23 H -0.211 1.211 24 C 0.035 3.965 25 C 0.011 3.989 26 H 0.106 0.894 27 S 2.677 3.323 28 O -0.906 6.906 29 O -0.937 6.937 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.042 0.958 42 H 0.044 0.956 43 H 0.067 0.933 44 H 0.117 0.883 45 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -3.282 15.483 13.489 20.796 hybrid contribution 0.244 -0.033 -0.341 0.421 sum -3.038 15.450 13.148 20.513 Atomic orbital electron populations 1.21291 0.75759 1.03395 1.01742 1.57204 1.13871 1.21349 1.91884 1.22110 0.89862 0.90785 1.01652 1.22698 0.96277 0.92761 1.03194 1.30969 1.20251 1.10826 1.08687 0.82201 1.18378 0.80883 0.79750 0.87806 1.90809 1.68286 1.63108 1.14520 1.48442 1.34576 1.42732 1.08048 1.22795 1.00639 0.97917 0.82171 1.23134 0.99078 0.95693 0.98055 1.22891 0.97777 0.97472 0.94773 0.89258 1.21000 0.93809 0.92577 0.90814 1.44130 1.38124 1.16621 1.33896 1.18953 1.15421 0.94284 1.07918 0.90366 1.24870 0.98104 0.97912 0.99340 1.69889 1.23048 1.27956 1.34870 0.86194 0.77268 0.81662 0.80547 1.21194 1.21542 1.21131 1.21711 0.91032 0.82948 1.00801 1.23026 0.89990 0.92916 0.92943 0.89440 1.06340 0.76796 0.73629 0.75515 1.93720 1.80180 1.69852 1.46828 1.93606 1.83637 1.74080 1.42400 0.90152 0.91776 0.92062 0.90668 0.88552 0.86783 0.87008 0.90821 0.91158 0.89620 0.89728 0.95767 0.95581 0.93344 0.88285 0.96104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.09 11.40 59.84 0.68 1.77 16 2 N -1.00 -11.19 3.72 -120.71 -0.45 -11.64 16 3 C 0.08 0.62 6.81 -3.18 -0.02 0.60 16 4 C -0.11 -1.03 6.16 -24.79 -0.15 -1.18 16 5 C -0.60 -7.54 3.11 -26.50 -0.08 -7.62 16 6 H 0.16 1.39 7.08 -51.93 -0.37 1.02 16 7 C 0.55 9.82 6.63 -10.99 -0.07 9.75 16 8 O -0.49 -10.89 16.09 5.56 0.09 -10.80 16 9 N -0.60 -10.51 2.89 -160.51 -0.46 -10.97 16 10 C 0.09 1.15 6.31 -1.53 -0.01 1.14 16 11 C -0.12 -1.71 6.38 -23.73 -0.15 -1.86 16 12 C -0.11 -1.81 3.85 -88.34 -0.34 -2.15 16 13 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 14 C 0.14 2.96 6.66 -3.86 -0.03 2.93 16 15 N -0.60 -15.89 3.37 -172.23 -0.58 -16.47 16 16 C -0.24 -6.85 10.25 -15.06 -0.15 -7.01 16 17 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 18 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 16 19 N -0.91 -28.75 10.17 55.49 0.56 -28.19 16 20 Si 0.91 23.05 29.55 -169.99 -5.02 18.03 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 23 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 24 C 0.16 4.22 4.84 -3.41 -0.02 4.20 16 25 C 0.11 2.28 3.84 -65.76 -0.25 2.03 16 26 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 27 S 2.59 40.20 5.83 -107.50 -0.63 39.57 16 28 O -0.92 -19.29 17.75 -57.41 -1.02 -20.31 16 29 O -0.95 -16.03 18.14 -57.41 -1.04 -17.07 16 30 H 0.08 0.46 8.12 -51.92 -0.42 0.04 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.11 1.28 7.30 -51.93 -0.38 0.90 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.84 7.49 -51.93 -0.39 0.45 16 39 H 0.09 1.43 7.89 -51.93 -0.41 1.02 16 40 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.02 0.49 8.14 -51.92 -0.42 0.06 16 42 H 0.03 0.52 7.73 -51.93 -0.40 0.12 16 43 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 44 H 0.10 3.03 6.22 -51.93 -0.32 2.70 16 45 H 0.02 0.62 7.97 -51.93 -0.41 0.20 16 LS Contribution 367.90 15.07 5.54 5.54 Total: -1.00 -40.32 367.90 -10.58 -50.90 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -6.88 Total: -0.95 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -0.69 Total: 2.36 kcal Atomic # 7 Polarization: -66.34 SS G_CDS: -0.93 Total: -67.27 kcal Atomic # 8 Polarization: -46.21 SS G_CDS: -1.97 Total: -48.18 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.03 kcal Atomic # 16 Polarization: 40.20 SS G_CDS: -0.63 Total: 39.57 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -40.32 -10.58 -50.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076349948.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.992 kcal (2) G-P(sol) polarization free energy of solvation -40.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds